CB290639

Overview
NameCB290639
Unique NameCB290639
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB290639 vs. ExPASy Swiss-Prot
Match: VATL2_CAEEL (V-type proton ATPase 16 kDa proteolipid subunit 2/3 OS=Caenorhabditis elegans GN=vha-2 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 5.186e-24
Identity = 57/121 (47.11%), Postives = 76/121 (62.81%), Query Frame = -3 
Query:  343 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSS 705
            S VG+ SMGVMRPEL+MKS++PV+MAG++GIYGL++A+++   +   +  Y L  G+                G AIGIVGDAGVR  AQQP+LFVGM           LYG+IV +IL +
Sbjct:   40 SAVGICSMGVMRPELIMKSVIPVIMAGIIGIYGLVVAMVLKGKVTSASAGYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTAQQPRLFVGMILILIFSEVLGLYGMIVALILGT 160
[Close]
BLAST of CB290639 vs. ExPASy Swiss-Prot
Match: VATL2_CAEBR (V-type proton ATPase 16 kDa proteolipid subunit 2/3 OS=Caenorhabditis briggsae GN=vha-2 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.186e-24
Identity = 57/121 (47.11%), Postives = 76/121 (62.81%), Query Frame = -3 
Query:  343 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSS 705
            S VG+ SMGVMRPEL+MKS++PV+MAG++GIYGL++A+++   +   +  Y L  G+                G AIGIVGDAGVR  AQQP+LFVGM           LYG+IV +IL +
Sbjct:   40 SAVGICSMGVMRPELIMKSVIPVIMAGIIGIYGLVVAMVLKGKVQAASAGYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTAQQPRLFVGMILILIFSEVLGLYGMIVALILGT 160
[Close]
BLAST of CB290639 vs. ExPASy Swiss-Prot
Match: VATL_DROME (V-type proton ATPase 16 kDa proteolipid subunit OS=Drosophila melanogaster GN=Vha16 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.773e-24
Identity = 61/122 (50.00%), Postives = 78/122 (63.93%), Query Frame = -3 
Query:  340 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSR 705
            SG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+  +   +K Y L+ G+                G AIGIVGDAGVR  AQQP+LFVGM           LYGLIV I L ++
Sbjct:   39 SGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGALEEPSK-YSLYRGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 159
[Close]
BLAST of CB290639 vs. ExPASy Swiss-Prot
Match: VATL_TORMA (V-type proton ATPase 16 kDa proteolipid subunit OS=Torpedo marmorata PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.509e-23
Identity = 61/122 (50.00%), Postives = 77/122 (63.11%), Query Frame = -3 
Query:  340 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSR 705
            SG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+   N   +   LF  +                G AIGIVGDAGVR  AQQP+LFVGM           LYGLIV +ILS++
Sbjct:   36 SGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA---NSLTEDISLFKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 154
[Close]
BLAST of CB290639 vs. ExPASy Swiss-Prot
Match: VATL_NEPNO (V-type proton ATPase 16 kDa proteolipid subunit OS=Nephrops norvegicus PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.971e-23
Identity = 60/122 (49.18%), Postives = 79/122 (64.75%), Query Frame = -3 
Query:  340 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSR 705
            SGVG+++M VMRPEL+MK I+PVVMAG++ IYGL++AV+I+ G   +A +Y L+ G+                G AIGIVGDAGVR  AQQP+L+VGM           LYGLIV I L ++
Sbjct:   36 SGVGISAMSVMRPELIMKCIIPVVMAGIIAIYGLVVAVLIA-GKLDEAPTYTLYQGFVHMGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLYVGMILILIFAEVLGLYGLIVAIFLYTK 156
[Close]
BLAST of CB290639 vs. ExPASy Swiss-Prot
Match: VATL_SHEEP (V-type proton ATPase 16 kDa proteolipid subunit OS=Ovis aries GN=ATP6V0C PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.361e-23
Identity = 59/122 (48.36%), Postives = 77/122 (63.11%), Query Frame = -3 
Query:  340 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSR 705
            SG G+A+M VMRPE++MKSI+PVVMAG++ IYGL++AV+I+  +N       L+  +                G AIGIVGDAGVR  AQQP+LFVGM           LYGLIV +ILS++
Sbjct:   37 SGTGIAAMSVMRPEMIMKSIIPVVMAGIIAIYGLVVAVLIANSLN---DGISLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 155
[Close]
BLAST of CB290639 vs. ExPASy Swiss-Prot
Match: VATL_BOVIN (V-type proton ATPase 16 kDa proteolipid subunit OS=Bos taurus GN=ATP6V0C PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.361e-23
Identity = 59/122 (48.36%), Postives = 77/122 (63.11%), Query Frame = -3 
Query:  340 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSR 705
            SG G+A+M VMRPE++MKSI+PVVMAG++ IYGL++AV+I+  +N       L+  +                G AIGIVGDAGVR  AQQP+LFVGM           LYGLIV +ILS++
Sbjct:   37 SGTGIAAMSVMRPEMIMKSIIPVVMAGIIAIYGLVVAVLIANSLN---DGISLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 155
[Close]
BLAST of CB290639 vs. ExPASy Swiss-Prot
Match: VATL_HUMAN (V-type proton ATPase 16 kDa proteolipid subunit OS=Homo sapiens GN=ATP6V0C PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.733e-23
Identity = 59/122 (48.36%), Postives = 76/122 (62.30%), Query Frame = -3 
Query:  340 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSR 705
            SG G+A+M VMRPE +MKSI+PVVMAG++ IYGL++AV+I+  +N       L+  +                G AIGIVGDAGVR  AQQP+LFVGM           LYGLIV +ILS++
Sbjct:   37 SGTGIAAMSVMRPEQIMKSIIPVVMAGIIAIYGLVVAVLIANSLNDDIS---LYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 155
[Close]
BLAST of CB290639 vs. ExPASy Swiss-Prot
Match: VATL_RAT (V-type proton ATPase 16 kDa proteolipid subunit OS=Rattus norvegicus GN=Atp6v0c PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.488e-23
Identity = 60/122 (49.18%), Postives = 76/122 (62.30%), Query Frame = -3 
Query:  340 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSR 705
            SG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+   N       L+  +                G AIGIVGDAGVR  AQQP+LFVGM           LYGLIV +ILS++
Sbjct:   37 SGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA---NSLTDGITLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 155
[Close]
BLAST of CB290639 vs. ExPASy Swiss-Prot
Match: VATL_MOUSE (V-type proton ATPase 16 kDa proteolipid subunit OS=Mus musculus GN=Atp6v0c PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.488e-23
Identity = 60/122 (49.18%), Postives = 76/122 (62.30%), Query Frame = -3 
Query:  340 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSR 705
            SG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+   N       L+  +                G AIGIVGDAGVR  AQQP+LFVGM           LYGLIV +ILS++
Sbjct:   37 SGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA---NSLTDGITLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 155
The following BLAST results are available for this feature:
BLAST of CB290639 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
VATL2_CAEEL5.186e-2447.11V-type proton ATPase 16 kDa proteolipid subunit 2/... [more]
VATL2_CAEBR5.186e-2447.11V-type proton ATPase 16 kDa proteolipid subunit 2/... [more]
VATL_DROME6.773e-2450.00V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_TORMA1.509e-2350.00V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_NEPNO1.971e-2349.18V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_SHEEP3.361e-2348.36V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_BOVIN3.361e-2348.36V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_HUMAN5.733e-2348.36V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_RAT7.488e-2349.18V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_MOUSE7.488e-2349.18V-type proton ATPase 16 kDa proteolipid subunit OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cg01_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cg01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290639 ID=CB290639; Name=CB290639; organism=Citrus sinensis; type=EST; length=707bp
TTTTTTTTTTTTAAGAAAAAACGTTGAATAGATAATAAGACAATACATGC
ACTAGATTACCGAATAAAATTCCTTTCTGACAGTTTAAAGTTCTGCAAAA
GTGCATGGACAGCTTTGCAAACTTTATTGTTTGAAGAAACTCAATCCTAC
TACCAGAAACATGGAGTAACATACAAATGACTCGCAGAACGGCAACTTCC
ACAAGAAAGTTTGAGCAAGTGCTATCCACTTGAACCTGAGAATAATTTTA
AAAAAAATCTCGCTCCCCCAGAGTGACAAGTTATAAAAGAATACTTAGCA
ATACAAATTCCCTTCTTAATCTGCTCTGGACTGACCCGCACGTGAAGACA
AGATGATACCAACAATAAGGCCATACAGTGCAAGGGCTTCAGCGAAAATG
AGGATAAGGATCATCCCAACAAAGAGTTTTGGCTGCTGTGCATTGGCTCT
GACACCTGCGTCACCAACGATTCCAATAGCCATTCCAGCAGAAAGCCCGG
CAAGACCACAAGCCAAACCAGAGGAGAGATGAGCATAGCCATCAAAAAGG
TAATATGACTTGGCCTTGGGGTTAATCCCAGTACTGATAATAACAGCAAT
AATCAAACCATATATACCCAAAACACCAGCCATAACAACTGGCACAATCG
ACTTCATCACCAGCTCAGGCCTCATAACACCCATTGACGCCACACCAACA
CCACTCT
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