CB290639

Overview
NameCB290639
Unique NameCB290639
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290639 vs. ExPASy Swiss-Prot
Match: VATL_CANTR (V-type proton ATPase 16 kDa proteolipid subunit OS=Candida tropicalis GN=VMA3 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.668e-22
Identity = 57/125 (45.60%), Postives = 79/125 (63.20%), Query Frame = -3
Query:  331 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRAGQ 705
            SGVG+ +  V RP+L++K++VPVVMAG++ IYGL+++V++S  ++ K     L+ G+                G AIGIVGDAGVR  AQQP+LFVGM           LYGLIV ++L+SRA Q
Sbjct:   35 SGVGICATSVTRPDLLVKNVVPVVMAGIIAIYGLVVSVLVSDSLSQKQA---LYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALLLNSRASQ 156          
BLAST of CB290639 vs. ExPASy Swiss-Prot
Match: VATL2_KLULA (V-type proton ATPase 16 kDa proteolipid subunit 2 OS=Kluyveromyces lactis GN=VMA11 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.179e-22
Identity = 53/122 (43.44%), Postives = 79/122 (64.75%), Query Frame = -3
Query:  340 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSR 705
            SG+G++ +G  +PEL+MKS++PVVM+G+L +YGL++AV+I+ G++P  + Y LF+G+                G AIGIVGD GVR    QP+LFVG+           LYG+IV +IL++R
Sbjct:   41 SGIGISGIGTFKPELIMKSLIPVVMSGILAVYGLVVAVLIAGGLSP-TEDYTLFNGFMHLSCGLCVGFACLSSGYAIGIVGDVGVRKYMHQPRLFVGIVLILIFSEVLGLYGMIVALILNTR 161          
BLAST of CB290639 vs. ExPASy Swiss-Prot
Match: VATL2_ASHGO (V-type proton ATPase 16 kDa proteolipid subunit 2 OS=Ashbya gossypii GN=VMA11 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.179e-22
Identity = 52/122 (42.62%), Postives = 79/122 (64.75%), Query Frame = -3
Query:  340 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSR 705
            SG+G++ +G  RPEL+MKS++PVVM+G+L +YGL++AV+++ G++P  + Y LF+G+                G AIGIVGD GVR    QP+LFVG+           LYG+I+ +IL++R
Sbjct:   40 SGIGISGIGTFRPELIMKSLIPVVMSGILAVYGLVVAVLVAGGLSP-TEEYTLFNGFMHLAAGLCVGFACLSSGYAIGIVGDVGVRKFMHQPRLFVGIVLILIFAEVLGLYGMIIALILNTR 160          
BLAST of CB290639 vs. ExPASy Swiss-Prot
Match: VATL1_CAEEL (V-type proton ATPase 16 kDa proteolipid subunit 1 OS=Caenorhabditis elegans GN=vha-1 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.845e-22
Identity = 55/121 (45.45%), Postives = 76/121 (62.81%), Query Frame = -3
Query:  343 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSS 705
            +G G+ASM V RP+LVMK+I+PVVMAG++ IYGL++AVI+S  + P   +Y + + +                G AIGI GDAGVRA +QQP++FVGM           LYG+IV +IL +
Sbjct:   48 AGTGIASMAVARPDLVMKAIIPVVMAGIVAIYGLVVAVIVSGKVEPAGANYTINNAFSQFAGGLVCGLCGLGAGYAIGIAGDAGVRALSQQPRMFVGMILILIFAEVLGLYGMIVALILGA 168          
BLAST of CB290639 vs. ExPASy Swiss-Prot
Match: VATL_DICDI (V-type proton ATPase proteolipid subunit OS=Dictyostelium discoideum GN=vatP PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.854e-22
Identity = 59/121 (48.76%), Postives = 77/121 (63.64%), Query Frame = -3
Query:  343 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSS 705
            + VG+++MGVM+P+LV+K+ +PV+ AGV+ IYGLII VI+  GI P A +Y L   +                GMAIGIVGD+GVRA  QQPKL+V M           LYGLI+GI+LSS
Sbjct:   54 ASVGISNMGVMKPDLVIKAFIPVIFAGVIAIYGLIICVILVGGIKPNA-NYTLMKSFTDLGAGLTVGLCGLAAGMAIGIVGDSGVRAFGQQPKLYVIMMLILIFSEALGLYGLIIGILLSS 173          
BLAST of CB290639 vs. ExPASy Swiss-Prot
Match: VATL2_YEAST (V-type proton ATPase subunit c' OS=Saccharomyces cerevisiae GN=VMA11 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.854e-22
Identity = 53/125 (42.40%), Postives = 79/125 (63.20%), Query Frame = -3
Query:  331 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRAGQ 705
            SG+G+A +G  +PEL+MKS++PVVM+G+L IYGL++AV+I+  ++P  + Y LF+G+                G AIG+VGD GVR    QP+LFVG+           LYG+IV +IL++R  +
Sbjct:   41 SGIGIAGIGTFKPELIMKSLIPVVMSGILAIYGLVVAVLIAGNLSP-TEDYTLFNGFMHLSCGLCVGFACLSSGYAIGMVGDVGVRKYMHQPRLFVGIVLILIFSEVLGLYGMIVALILNTRGSE 164          
BLAST of CB290639 vs. ExPASy Swiss-Prot
Match: VATL2_CANGA (V-type proton ATPase 16 kDa proteolipid subunit 2 OS=Candida glabrata GN=VMA11 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.339e-22
Identity = 52/125 (41.60%), Postives = 79/125 (63.20%), Query Frame = -3
Query:  331 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRAGQ 705
            SG+G+A +G  +PEL+MKS++PVVM+G+L IYGL++AV+I+  ++P  + Y LF+G+                G AIGIVGD GVR    QP+LFVG+           LYG+I+ +IL+++  +
Sbjct:   41 SGIGIAGIGTFKPELIMKSLIPVVMSGILAIYGLVVAVLIAGNLSP-TEEYTLFNGFMHLSCGLCVGFACLSSGYAIGIVGDVGVRKYMHQPRLFVGIVLILIFSEVLGLYGMIIALILNTKGSE 164          
BLAST of CB290639 vs. ExPASy Swiss-Prot
Match: VATL_SCHPO (V-type proton ATPase 16 kDa proteolipid subunit OS=Schizosaccharomyces pombe GN=vma3 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.409e-21
Identity = 54/123 (43.90%), Postives = 79/123 (64.23%), Query Frame = -3
Query:  337 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRA 705
            +GVG+++MGV+RP+L++K+ +PVVMAG++ IYGL+++V+IS  +    +   L+ G+                G AIGIVGDAGVR  AQQP+LFV M           LYGLIV ++L++RA
Sbjct:   36 AGVGISAMGVLRPDLIVKNTIPVVMAGIIAIYGLVVSVLISGNLK---QILSLYSGFIQLGAGLSVGLAGLAAGFAIGIVGDAGVRGTAQQPRLFVAMILILIFAEVLGLYGLIVALLLNTRA 155          
BLAST of CB290639 vs. ExPASy Swiss-Prot
Match: VATL2_DEBHA (V-type proton ATPase 16 kDa proteolipid subunit 2 OS=Debaryomyces hansenii GN=VMA11 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.109e-21
Identity = 49/122 (40.16%), Postives = 80/122 (65.57%), Query Frame = -3
Query:  340 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSR 705
            SG+G++ +G  +PEL+MKS++PVVM+G+L +YGL+++V+I+ G++P  ++Y LF+G+                G +IGIVGD GVR    QP+LFVG+           LYG+I+ +IL+++
Sbjct:   40 SGIGISGIGTFKPELIMKSLIPVVMSGILSVYGLVVSVLIAGGLSP-TENYSLFNGFMHLACGLSVGFACLASGYSIGIVGDEGVRQFMHQPRLFVGIVLILIFAEVLGLYGMIIALILNTK 160          
BLAST of CB290639 vs. ExPASy Swiss-Prot
Match: VATL1_YEAST (V-type proton ATPase subunit c OS=Saccharomyces cerevisiae GN=VMA3 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.109e-21
Identity = 55/125 (44.00%), Postives = 78/125 (62.40%), Query Frame = -3
Query:  331 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRAGQ 705
            SGVG+ +  V+RP+L+ K+IVPV+MAG++ IYGL+++V++   +  K     L+ G+                G AIGIVGDAGVR ++QQP+LFVGM           LYGLIV ++L+SRA Q
Sbjct:   35 SGVGICATCVLRPDLLFKNIVPVIMAGIIAIYGLVVSVLVCYSLGQKQA---LYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGSSQQPRLFVGMILILIFAEVLGLYGLIVALLLNSRATQ 156          
The following BLAST results are available for this feature:
BLAST of CB290639 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
VATL_CANTR1.668e-2245.60V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL2_KLULA2.179e-2243.44V-type proton ATPase 16 kDa proteolipid subunit 2 ... [more]
VATL2_ASHGO2.179e-2242.62V-type proton ATPase 16 kDa proteolipid subunit 2 ... [more]
VATL1_CAEEL2.845e-2245.45V-type proton ATPase 16 kDa proteolipid subunit 1 ... [more]
VATL_DICDI4.854e-2248.76V-type proton ATPase proteolipid subunit OS=Dictyo... [more]
VATL2_YEAST4.854e-2242.40V-type proton ATPase subunit c' OS=Saccharomyces c... [more]
VATL2_CANGA6.339e-2241.60V-type proton ATPase 16 kDa proteolipid subunit 2 ... [more]
VATL_SCHPO2.409e-2143.90V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL2_DEBHA4.109e-2140.16V-type proton ATPase 16 kDa proteolipid subunit 2 ... [more]
VATL1_YEAST4.109e-2144.00V-type proton ATPase subunit c OS=Saccharomyces ce... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cg01_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cg01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290639 ID=CB290639; Name=CB290639; organism=Citrus sinensis; type=EST; length=707bp
TTTTTTTTTTTTAAGAAAAAACGTTGAATAGATAATAAGACAATACATGC
ACTAGATTACCGAATAAAATTCCTTTCTGACAGTTTAAAGTTCTGCAAAA
GTGCATGGACAGCTTTGCAAACTTTATTGTTTGAAGAAACTCAATCCTAC
TACCAGAAACATGGAGTAACATACAAATGACTCGCAGAACGGCAACTTCC
ACAAGAAAGTTTGAGCAAGTGCTATCCACTTGAACCTGAGAATAATTTTA
AAAAAAATCTCGCTCCCCCAGAGTGACAAGTTATAAAAGAATACTTAGCA
ATACAAATTCCCTTCTTAATCTGCTCTGGACTGACCCGCACGTGAAGACA
AGATGATACCAACAATAAGGCCATACAGTGCAAGGGCTTCAGCGAAAATG
AGGATAAGGATCATCCCAACAAAGAGTTTTGGCTGCTGTGCATTGGCTCT
GACACCTGCGTCACCAACGATTCCAATAGCCATTCCAGCAGAAAGCCCGG
CAAGACCACAAGCCAAACCAGAGGAGAGATGAGCATAGCCATCAAAAAGG
TAATATGACTTGGCCTTGGGGTTAATCCCAGTACTGATAATAACAGCAAT
AATCAAACCATATATACCCAAAACACCAGCCATAACAACTGGCACAATCG
ACTTCATCACCAGCTCAGGCCTCATAACACCCATTGACGCCACACCAACA
CCACTCT
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