CB290639

Overview
NameCB290639
Unique NameCB290639
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290639 vs. ExPASy Swiss-Prot
Match: VATL2_SCHPO (V-type proton ATPase 16 kDa proteolipid subunit 2 OS=Schizosaccharomyces pombe GN=vma11 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.945e-19
Identity = 49/122 (40.16%), Postives = 77/122 (63.11%), Query Frame = -3
Query:  340 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSR 705
            +G G+A++G  RPE+VMKS++PVVM+G++G+YGL+++V+I+  ++P    Y LF G+                G AIG+VGD GV++  +Q ++FV M           LYGLIVG+IL ++
Sbjct:   36 AGRGIAAVGAFRPEIVMKSLIPVVMSGIIGVYGLVMSVLIAGDMSPD-NDYSLFSGFIHLSAGLAVGLTGVAAGYAIGVVGDRGVQSFMRQDRIFVSMVLILIFAEVLGLYGLIVGLILQTK 156          
BLAST of CB290639 vs. ExPASy Swiss-Prot
Match: VATL_ENTHI (V-type proton ATPase 16 kDa proteolipid subunit OS=Entamoeba histolytica GN=VMA3 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.846e-19
Identity = 53/126 (42.06%), Postives = 72/126 (57.14%), Query Frame = -3
Query:  328 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRAGQS 705
            S VG++S+GVM+PE +++S+ PVV AG++G+YGLI+ +++   IN     Y L   +                GMAIGI GD GVR  AQQPKLFVGM           LYG IV +I++S    S
Sbjct:   44 SSVGISSVGVMKPEFIVRSVAPVVFAGIIGLYGLIVCILLF--INVTKSEYSLNRAFLDLGAGLTCGLCGLASGMAIGISGDCGVRGAAQQPKLFVGMLICLIFSEALALYGFIVALIMASTGENS 167          
BLAST of CB290639 vs. ExPASy Swiss-Prot
Match: VATL2_NEUCR (V-type proton ATPase 16 kDa proteolipid subunit 2 OS=Neurospora crassa GN=vma-11 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 8.567e-19
Identity = 48/125 (38.40%), Postives = 75/125 (60.00%), Query Frame = -3
Query:  337 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINP--KAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRA 705
            SG+G+A +G  RP+L+MK ++PVVM+G++ +Y L++AV+I+  + P    + Y LF+G+                G  IGIVGD GVR+   Q ++FVGM           LYGLIV +IL++++
Sbjct:   41 SGIGIAGVGTFRPDLIMKCLIPVVMSGIIAVYALVVAVLIAQDLGPPGSGQHYSLFNGFMHLACGLSVGLTGLAAGYCIGIVGDKGVRSFMLQSRIFVGMVLILIFGEVLGLYGLIVALILNTKS 165          
BLAST of CB290639 vs. ExPASy Swiss-Prot
Match: VATL_ENTDI (V-type proton ATPase 16 kDa proteolipid subunit OS=Entamoeba dispar GN=VMA3 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.909e-18
Identity = 52/126 (41.27%), Postives = 71/126 (56.35%), Query Frame = -3
Query:  328 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRAGQS 705
            S VG++S+GVM+PE +M+S+ PVV AGV+G+YGLI+ +++   IN     Y L   +                GM+IGI GD GVR  AQQPKLFV M           LYG IV +I+++    S
Sbjct:   42 SSVGISSVGVMKPEFIMRSLFPVVFAGVIGLYGLIVCIVLF--INVNKSEYSLNRAFLDLGAGLTCGLCGLASGMSIGISGDCGVRGAAQQPKLFVSMLICLIFSEALALYGFIVALIMAATGDNS 165          
The following BLAST results are available for this feature:
BLAST of CB290639 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
VATL2_SCHPO2.945e-1940.16V-type proton ATPase 16 kDa proteolipid subunit 2 ... [more]
VATL_ENTHI3.846e-1942.06V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL2_NEUCR8.567e-1938.40V-type proton ATPase 16 kDa proteolipid subunit 2 ... [more]
VATL_ENTDI1.909e-1841.27V-type proton ATPase 16 kDa proteolipid subunit OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cg01_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cg01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290639 ID=CB290639; Name=CB290639; organism=Citrus sinensis; type=EST; length=707bp
TTTTTTTTTTTTAAGAAAAAACGTTGAATAGATAATAAGACAATACATGC
ACTAGATTACCGAATAAAATTCCTTTCTGACAGTTTAAAGTTCTGCAAAA
GTGCATGGACAGCTTTGCAAACTTTATTGTTTGAAGAAACTCAATCCTAC
TACCAGAAACATGGAGTAACATACAAATGACTCGCAGAACGGCAACTTCC
ACAAGAAAGTTTGAGCAAGTGCTATCCACTTGAACCTGAGAATAATTTTA
AAAAAAATCTCGCTCCCCCAGAGTGACAAGTTATAAAAGAATACTTAGCA
ATACAAATTCCCTTCTTAATCTGCTCTGGACTGACCCGCACGTGAAGACA
AGATGATACCAACAATAAGGCCATACAGTGCAAGGGCTTCAGCGAAAATG
AGGATAAGGATCATCCCAACAAAGAGTTTTGGCTGCTGTGCATTGGCTCT
GACACCTGCGTCACCAACGATTCCAATAGCCATTCCAGCAGAAAGCCCGG
CAAGACCACAAGCCAAACCAGAGGAGAGATGAGCATAGCCATCAAAAAGG
TAATATGACTTGGCCTTGGGGTTAATCCCAGTACTGATAATAACAGCAAT
AATCAAACCATATATACCCAAAACACCAGCCATAACAACTGGCACAATCG
ACTTCATCACCAGCTCAGGCCTCATAACACCCATTGACGCCACACCAACA
CCACTCT
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