CB290640

Overview
NameCB290640
Unique NameCB290640
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length576
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290640 vs. ExPASy Swiss-Prot
Match: VATL2_CAEEL (V-type proton ATPase 16 kDa proteolipid subunit 2/3 OS=Caenorhabditis elegans GN=vha-2 PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 9.136e-25
Identity = 56/122 (45.90%), Postives = 75/122 (61.48%), Query Frame = 1
Query:    1 KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSS 366
            KS VG+ SMGVMRPEL+MKS++PV+MAG++GIYGL++A+++   +   +  Y L  G+                  AIGIVGDAGVR  AQQP+LFVGM            YG+IV +IL +
Sbjct:   39 KSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYGLVVAMVLKGKVTSASAGYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTAQQPRLFVGMILILIFSEVLGLYGMIVALILGT 160          
BLAST of CB290640 vs. ExPASy Swiss-Prot
Match: VATL2_CAEBR (V-type proton ATPase 16 kDa proteolipid subunit 2/3 OS=Caenorhabditis briggsae GN=vha-2 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 9.136e-25
Identity = 56/122 (45.90%), Postives = 75/122 (61.48%), Query Frame = 1
Query:    1 KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSS 366
            KS VG+ SMGVMRPEL+MKS++PV+MAG++GIYGL++A+++   +   +  Y L  G+                  AIGIVGDAGVR  AQQP+LFVGM            YG+IV +IL +
Sbjct:   39 KSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYGLVVAMVLKGKVQAASAGYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTAQQPRLFVGMILILIFSEVLGLYGMIVALILGT 160          
BLAST of CB290640 vs. ExPASy Swiss-Prot
Match: VATL_DROME (V-type proton ATPase 16 kDa proteolipid subunit OS=Drosophila melanogaster GN=Vha16 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.193e-24
Identity = 60/123 (48.78%), Postives = 77/123 (62.60%), Query Frame = 1
Query:    1 KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 369
            KSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+  +   +K Y L+ G+                  AIGIVGDAGVR  AQQP+LFVGM            YGLIV I L ++
Sbjct:   38 KSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGALEEPSK-YSLYRGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 159          
BLAST of CB290640 vs. ExPASy Swiss-Prot
Match: VATL_TORMA (V-type proton ATPase 16 kDa proteolipid subunit OS=Torpedo marmorata PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.658e-24
Identity = 60/123 (48.78%), Postives = 76/123 (61.79%), Query Frame = 1
Query:    1 KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 369
            KSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+   N   +   LF  +                  AIGIVGDAGVR  AQQP+LFVGM            YGLIV +ILS++
Sbjct:   35 KSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA---NSLTEDISLFKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 154          
BLAST of CB290640 vs. ExPASy Swiss-Prot
Match: VATL_NEPNO (V-type proton ATPase 16 kDa proteolipid subunit OS=Nephrops norvegicus PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.472e-24
Identity = 59/123 (47.97%), Postives = 78/123 (63.41%), Query Frame = 1
Query:    1 KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 369
            KSGVG+++M VMRPEL+MK I+PVVMAG++ IYGL++AV+I+ G   +A +Y L+ G+                  AIGIVGDAGVR  AQQP+L+VGM            YGLIV I L ++
Sbjct:   35 KSGVGISAMSVMRPELIMKCIIPVVMAGIIAIYGLVVAVLIA-GKLDEAPTYTLYQGFVHMGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLYVGMILILIFAEVLGLYGLIVAIFLYTK 156          
BLAST of CB290640 vs. ExPASy Swiss-Prot
Match: VATL_SHEEP (V-type proton ATPase 16 kDa proteolipid subunit OS=Ovis aries GN=ATP6V0C PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.922e-24
Identity = 58/123 (47.15%), Postives = 76/123 (61.79%), Query Frame = 1
Query:    1 KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 369
            KSG G+A+M VMRPE++MKSI+PVVMAG++ IYGL++AV+I+  +N       L+  +                  AIGIVGDAGVR  AQQP+LFVGM            YGLIV +ILS++
Sbjct:   36 KSGTGIAAMSVMRPEMIMKSIIPVVMAGIIAIYGLVVAVLIANSLN---DGISLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 155          
BLAST of CB290640 vs. ExPASy Swiss-Prot
Match: VATL_BOVIN (V-type proton ATPase 16 kDa proteolipid subunit OS=Bos taurus GN=ATP6V0C PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.922e-24
Identity = 58/123 (47.15%), Postives = 76/123 (61.79%), Query Frame = 1
Query:    1 KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 369
            KSG G+A+M VMRPE++MKSI+PVVMAG++ IYGL++AV+I+  +N       L+  +                  AIGIVGDAGVR  AQQP+LFVGM            YGLIV +ILS++
Sbjct:   36 KSGTGIAAMSVMRPEMIMKSIIPVVMAGIIAIYGLVVAVLIANSLN---DGISLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 155          
BLAST of CB290640 vs. ExPASy Swiss-Prot
Match: VATL_HUMAN (V-type proton ATPase 16 kDa proteolipid subunit OS=Homo sapiens GN=ATP6V0C PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.010e-23
Identity = 58/123 (47.15%), Postives = 75/123 (60.98%), Query Frame = 1
Query:    1 KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 369
            KSG G+A+M VMRPE +MKSI+PVVMAG++ IYGL++AV+I+  +N       L+  +                  AIGIVGDAGVR  AQQP+LFVGM            YGLIV +ILS++
Sbjct:   36 KSGTGIAAMSVMRPEQIMKSIIPVVMAGIIAIYGLVVAVLIANSLNDDIS---LYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 155          
BLAST of CB290640 vs. ExPASy Swiss-Prot
Match: VATL_RAT (V-type proton ATPase 16 kDa proteolipid subunit OS=Rattus norvegicus GN=Atp6v0c PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.319e-23
Identity = 59/123 (47.97%), Postives = 75/123 (60.98%), Query Frame = 1
Query:    1 KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 369
            KSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+   N       L+  +                  AIGIVGDAGVR  AQQP+LFVGM            YGLIV +ILS++
Sbjct:   36 KSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA---NSLTDGITLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 155          
BLAST of CB290640 vs. ExPASy Swiss-Prot
Match: VATL_MOUSE (V-type proton ATPase 16 kDa proteolipid subunit OS=Mus musculus GN=Atp6v0c PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.319e-23
Identity = 59/123 (47.97%), Postives = 75/123 (60.98%), Query Frame = 1
Query:    1 KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 369
            KSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+   N       L+  +                  AIGIVGDAGVR  AQQP+LFVGM            YGLIV +ILS++
Sbjct:   36 KSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA---NSLTDGITLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 155          
The following BLAST results are available for this feature:
BLAST of CB290640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
VATL2_CAEEL9.136e-2545.90V-type proton ATPase 16 kDa proteolipid subunit 2/... [more]
VATL2_CAEBR9.136e-2545.90V-type proton ATPase 16 kDa proteolipid subunit 2/... [more]
VATL_DROME1.193e-2448.78V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_TORMA2.658e-2448.78V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_NEPNO3.472e-2447.97V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_SHEEP5.922e-2447.15V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_BOVIN5.922e-2447.15V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_HUMAN1.010e-2347.15V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_RAT1.319e-2347.97V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_MOUSE1.319e-2347.97V-type proton ATPase 16 kDa proteolipid subunit OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cg01_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cg01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290640 ID=CB290640; Name=CB290640; organism=Citrus sinensis; type=EST; length=576bp
AAGAGTGGTGTTGGTGTGGCGTCAATGGGTGTTATGAGGCCTGAGCTGGT
GATGAAGTCGATTGTGCCAGTTGTTATGGCTGGTGTTTTGGGTATATATG
GTTTGATTATTGCTGTTATTATCAGTACTGGGATTAACCCCAAGGCCAAG
TCATATTACCTTTTTGATGGCTATGCTCATCTCTCCTCTGGTTTGGCTTG
TGGTCTTGCCGGGCTTTCTGCTGGAATGGCTATTGGAATCGTTGGTGACG
CAGGTGTCAGAGCCAATGCACAGCAGCCAAAACTCTTTGTTGGGATGATC
CTTATCCTCATTTTCGCTGAAGCCCTTGCACTGTATGGCCTTATTGTTGG
TATCATCTTGTCTTCACGTGCGGGTCAGTCCAGAGCAGATTAAGAAGGGA
ATTTGTATTGCTAAGTATTCTTTTATAACTTGTCACTCTGGGGGAGCGAG
ATTTTTTTTAAAATTATTCTCAGGTTCAAGTGGATAGCACTTGCTCAAAC
TTTCTTGTGGAAGTTGCCGTTCTGCGAGTCATTTGTATGTTACTCCATGT
TTCTGGTAGTAGGATTGAGTTTCTTC
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