CB290646

Overview
NameCB290646
Unique NameCB290646
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length870
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290646 vs. ExPASy Swiss-Prot
Match: SCM2A_DANRE (Calcium-binding mitochondrial carrier protein SCaMC-2-A OS=Danio rerio GN=slc25a25a PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.133e-11
Identity = 64/257 (24.90%), Postives = 109/257 (42.41%), Query Frame = 2
Query:  125 CTIPLDTAKVRLQLQKKAVAGDGVALPKYKGMLGTVATIAREEGMVSLWKGIVPGLHRQCLFGGLRIGLYEPVKTLYVGKDFVGDVPLSKKILAGLTTGALGIMIANPTDLVKVRLQAEGKLPPGVPRRYSGALNAYSTIVKQEGFAALWTGVGPNVARNAIINAAELASYDQVKQTILKIPGFTDNVVTHLLSGLGAGFVAVCIGS----PVDVVKSRMMGD-----SAYKSTLDCFIXTLKNDGPLAFYKGFLPN 868
            CT PLD  KV +Q+      G  + L      +  +  + +E G+ SLW+G    + +      L+   YE +K +         + +S++ +AG   G +      P +++K RL            +Y G  +    I+K EG +A + G  PN+         +LA Y+ +K T L+  G T+N    +   L  G V+   G     P+ ++++RM        S+  S    F   +K +GP   Y+G  PN
Sbjct:  203 CTAPLDRLKVLMQVH--GCQGKSMCL------MSGLTQMIKEGGVRSLWRGNGINVIKIAPETALKFMAYEQIKRVMGSSQET--LGISERFVAGSLAGVIAQSTIYPMEVLKTRLALRKT------GQYKGISDCAKHILKTEGMSAFYKGYVPNMLGIIPYAGIDLAVYETLKNTWLQRYG-TENADPGVFVLLACGTVSSTCGQLASYPLALIRTRMQAQASVEGSSQVSMTGLFKQIMKTEGPTGLYRGLTPN 442          
BLAST of CB290646 vs. ExPASy Swiss-Prot
Match: ADT_KLULA (ADP,ATP carrier protein OS=Kluyveromyces lactis GN=AAC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.133e-11
Identity = 56/247 (22.67%), Postives = 101/247 (40.89%), Query Frame = 2
Query:  134 PLDTAKVRLQLQKKAVAGDGVALPKYKGMLGTVATIAREEGMVSLWKGIVPGLHRQCLFGGLRIGLYEPVKTLYVGKDFVGDVP-LSKKILAGLTTGALGIMIANPTDLVKVRLQAEGK-LPPGVPRRYSGALNAYSTIVKQEGFAALWTGVGPNVARNAIINAAELASYDQVKQTILKIPGFTDNVVTHLLSGLGAGFVAVCIGSPVDVVKSRMMGDSA----YKSTLDCFIXTLKNDGPLAFYKG 856
            P++  K+ +Q Q + +   G    +Y G++      A +EG+ S W+G    + R      L     + +K ++  K   G     +  + +G   G L ++     D  + RL A+ K    G  R+++G ++ Y   +  +G A L+ G  P+V    +        YD +K  +L      ++ +   L G      A     P+D V+ RMM  S     Y    D F   +  +G  + +KG
Sbjct:   30 PIERVKLLIQNQDEMIK-QGSLDRRYTGIVECFKRTAADEGVASFWRGNTANVIRYFPTQALNFAFKDKIKAMFGFKKEEGYAKWFAGNLASGGLAGGLSLLFVYSLDYARTRLAADSKSAKKGGERQFNGLVDVYKKTLASDGVAGLYRGFLPSVVGIVVYRGLYFGLYDSLKPLLL-TGSLENSFLASFLLGWAVTTGASTASYPLDTVRRRMMMTSGQAVKYDGAFDAFRKIVAAEGIKSLFKG 274          
BLAST of CB290646 vs. ExPASy Swiss-Prot
Match: SCMC2_XENLA (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Xenopus laevis GN=slc25a25 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.397e-11
Identity = 47/161 (29.19%), Postives = 81/161 (50.31%), Query Frame = 2
Query:  392 KKILAGLTTGALGIMIANPTDLVKVRLQAEGKLPPGVPRRYSGALNAYSTIVKQEGFAALWTGVGPNVARNAIINAAELASYDQVKQTILKIPGFTDNVVTHLLSGLGAGFVAVCIGSPVDVVKSRM--MGDSAYKSTLDCFIXTLKNDGPLAFYKGFLPN 868
            + ++AG   GA+      P D +KV +Q        +       L  ++ ++++ GF +LW G G NV + A  +A +  +Y+Q+K+ I+     T  +    ++G  AG +A     P++V+K+RM       Y+  LDC    L  +G  AFYKG++PN
Sbjct:  233 RHLVAGGGAGAVSRTCTAPLDRLKVLMQVHASRSNNM-----SILGGFTHMIREGGFRSLWRGNGINVIKIAPESAIKFMAYEQIKR-IIGSNQETLGIHERFVAGSLAGVIAQSSIYPMEVLKTRMALRKTGQYQGVLDCGKKILLQEGLSAFYKGYVPN 387          
BLAST of CB290646 vs. ExPASy Swiss-Prot
Match: SCMC2_XENTR (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Xenopus tropicalis GN=slc25a25 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.206e-11
Identity = 47/161 (29.19%), Postives = 81/161 (50.31%), Query Frame = 2
Query:  392 KKILAGLTTGALGIMIANPTDLVKVRLQAEGKLPPGVPRRYSGALNAYSTIVKQEGFAALWTGVGPNVARNAIINAAELASYDQVKQTILKIPGFTDNVVTHLLSGLGAGFVAVCIGSPVDVVKSRM--MGDSAYKSTLDCFIXTLKNDGPLAFYKGFLPN 868
            + ++AG   GA+      P D +KV +Q        +       L  ++ ++++ G  +LW G G NV + A  +A +  +Y+Q+K+ I+     T  +   L++G  AG +A     P++V+K+RM       Y+  LDC    L  +G  AFYKG++PN
Sbjct:  232 RHLVAGGGAGAVSRTCTAPLDRLKVLMQVHASRSNNM-----SMLGGFTQMIREGGIRSLWRGNGINVIKIAPESAIKFMAYEQMKR-IIGSDQETLGIHERLVAGSLAGVIAQSSIYPMEVLKTRMALRKTGQYQGMLDCGKKILLKEGVSAFYKGYVPN 386          
BLAST of CB290646 vs. ExPASy Swiss-Prot
Match: SCMC1_MOUSE (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Mus musculus GN=Slc25a24 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.206e-11
Identity = 48/161 (29.81%), Postives = 75/161 (46.58%), Query Frame = 2
Query:  392 KKILAGLTTGALGIMIANPTDLVKVRLQAEGKLPPGVPRRYSGALNAYSTIVKQEGFAALWTGVGPNVARNAIINAAELASYDQVKQTILKIPGFTDNVVTHLLSGLGAGFVAVCIGSPVDVVKSRM--MGDSAYKSTLDCFIXTLKNDGPLAFYKGFLPN 868
            +++LAG   GA+      P D +KV +Q  G     +          +  +VK+ G  +LW G G NV + A   A +  +Y+Q K+ +L   G         +SG  AG  A     P++V+K+R+       Y     C    LK++G  AFYKG++PN
Sbjct:  196 RQLLAGGVAGAVSRTSTAPLDRLKVMMQVHGSKSMNI-------FGGFRQMVKEGGIRSLWRGNGTNVIKIAPETAVKFWAYEQYKK-LLTEEGQKLGTFERFISGSMAGATAQTFIYPMEVLKTRLAVAKTGQYSGIYGCAKKILKHEGFGAFYKGYIPN 348          
BLAST of CB290646 vs. ExPASy Swiss-Prot
Match: SCM1A_XENLA (Calcium-binding mitochondrial carrier protein SCaMC-1-A OS=Xenopus laevis GN=slc25a24-A PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.206e-11
Identity = 49/161 (30.43%), Postives = 77/161 (47.83%), Query Frame = 2
Query:  392 KKILAGLTTGALGIMIANPTDLVKVRLQAEGKLPPGVPRRYSGALNAYSTIVKQEGFAALWTGVGPNVARNAIINAAELASYDQVKQTILKIPGFTDNVVTHLLSGLGAGFVAVCIGSPVDVVKSRM-MGDSA-YKSTLDCFIXTLKNDGPLAFYKGFLPN 868
            K +LAG   GA+      P D +KV +Q  G       +  S  +     +VK+ G  +LW G G NV + A   A +  +Y+Q K+      G         ++G  AG  A     P++V+K+R+ +G +  Y    DC    ++ +G LAFYKG++PN
Sbjct:  196 KHLLAGGMAGAVSRTGTAPLDRLKVMMQVHGT------KGNSNIITGLKQMVKEGGVRSLWRGNGVNVIKIAPETAMKFWAYEQYKKLFTSESGKL-GTAERFIAGSLAGATAQTSIYPMEVLKTRLAVGKTGQYSGMFDCAKKIMQKEGILAFYKGYIPN 349          
The following BLAST results are available for this feature:
BLAST of CB290646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
SCM2A_DANRE4.133e-1124.90Calcium-binding mitochondrial carrier protein SCaM... [more]
ADT_KLULA4.133e-1122.67ADP,ATP carrier protein OS=Kluyveromyces lactis GN... [more]
SCMC2_XENLA5.397e-1129.19Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC2_XENTR9.206e-1129.19Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_MOUSE9.206e-1129.81Calcium-binding mitochondrial carrier protein SCaM... [more]
SCM1A_XENLA9.206e-1130.43Calcium-binding mitochondrial carrier protein SCaM... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01cg04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cg04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290646 ID=CB290646; Name=CB290646; organism=Citrus sinensis; type=EST; length=870bp
GCGCTATAAAGATTACCCTCGTTTCTTTGCCATAAACATGGTGGCCGATT
CCAAGGCTAAATCTGACATCTCTTTCGCCGGAACCTTCGCCAGTAGCGCT
TTTGCCGCTTGCTTTGCCGAGATTTGTACTATTCCTTTGGACACTGCTAA
AGTTAGGCTTCAGCTGCAAAAGAAAGCTGTCGCGGGGGATGGAGTGGCGT
TGCCAAAGTACAAGGGTATGTTGGGTACAGTTGCCACCATAGCTAGGGAA
GAAGGTATGGTGTCTCTCTGGAAAGGCATTGTTCCAGGATTACATCGTCA
ATGCTTATTTGGAGGGTTAAGGATTGGATTGTATGAGCCTGTGAAGACAC
TGTATGTGGGCAAGGACTTTGTTGGAGACGTTCCTTTAAGCAAGAAAATA
CTTGCAGGACTTACAACTGGTGCTCTCGGGATCATGATCGCAAATCCAAC
TGATCTTGTGAAGGTCAGACTTCAAGCTGAAGGAAAATTGCCTCCTGGTG
TACCGAGGCGCTACAGTGGAGCGTTGAATGCTTATTCCACAATTGTGAAA
CAGGAAGGATTTGCGGCTCTTTGGACTGGAGTTGGACCCAATGTTGCACG
AAATGCTATCATAAATGCTGCTGAACTGGCTAGCTATGATCAAGTGAAGC
AGACAATTTTGAAAATTCCAGGGTTCACAGATAACGTCGTCACTCATCTC
CTTTCTGGTCTGGGAGCTGGTTTTGTCGCTGTTTGTATTGGTTCCCCTGT
TGATGTGGTTAAGTCGAGGATGATGGGGGATTCTGCTTATAAGAGCACAC
TGGATTGTTTCATTANGACTCTGAAGAATGATGGGCCGTTGGCATTTTAT
AAGGGTTTCCTACCAAACTT
back to top