CB290650

Overview
NameCB290650
Unique NameCB290650
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290650 vs. ExPASy Swiss-Prot
Match: CAVP_BRAFL (Calcium vector protein OS=Branchiostoma floridae PE=2 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 5.222e-13
Identity = 45/147 (30.61%), Postives = 78/147 (53.06%), Query Frame = 1
Query:   64 ADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDF-PEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEK-LTDEEVDEMIREADVDGDGQINYEEFVKVM 498
            A  L  ++  E  + F +FD++ +      +   ++  LGQ  T+ E + ++ E         +  PE   ++  K    D EEE+  AF+VFD + +G I   E + +M  +GE+ LTD EV+E ++EAD DG+G I+  EF+ ++
Sbjct:    6 ARALGPEEKDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQTYTKRETEAIMKEARGPKGDKKNLGPEEWLVLCSKWVRQDDEEEILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDIPEFMDLI 152          
BLAST of CB290650 vs. ExPASy Swiss-Prot
Match: CML20_ORYSJ (Probable calcium-binding protein CML20 OS=Oryza sativa subsp. japonica GN=CML20 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.820e-13
Identity = 51/141 (36.17%), Postives = 73/141 (51.77%), Query Frame = 1
Query:   94 EFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNL---GEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 507
            E    F  FD DGDG I+  E+       G +  EAE  +M+   D DG+G +   E      R + +    + L+ AF  +D+D NG I+A ELR  +  L   G  LT E+  E++   D DGDG I+++EF K MM+K
Sbjct:   43 ELIRVFRCFDTDGDGLISAAEM---REFYGCSVDEAE--EMVAAADRDGDGFVSIEEL-----RAVMEGGGLDALRAAFDEYDEDGNGVITAEELRRALRRLNLDGMDLTAEQCAEIVAAVDSDGDGVISFDEF-KAMMSK 172          
BLAST of CB290650 vs. ExPASy Swiss-Prot
Match: CAVP_BRALA (Calcium vector protein OS=Branchiostoma lanceolatum PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 6.820e-13
Identity = 46/148 (31.08%), Postives = 81/148 (54.73%), Query Frame = 1
Query:   64 ADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNG--TIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEK-LTDEEVDEMIREADVDGDGQINYEEFVKVM 498
            A  L  ++  E  + F +FD++ +      +   ++  LGQ  T+ E + ++ E          I   E+L L ++ ++  D EEE+  AF+VFD + +G I   E + +M  +GE+ LTD EV+E ++EAD DG+G I+  EF+ ++
Sbjct:    6 ARALGPEEKDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQTYTKRETEAIMKEARGPKGDKKNIGPEEWLTLCSKWVRQ-DDEEEILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDIPEFMDLI 152          
BLAST of CB290650 vs. ExPASy Swiss-Prot
Match: ALLB3_BETVE (Calcium-binding allergen Bet v 3 OS=Betula verrucosa GN=BETVIII PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.820e-13
Identity = 48/157 (30.57%), Postives = 83/157 (52.87%), Query Frame = 1
Query:  100 KEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDT----------DSEEELKEA------------FRVFDKDQNGFISAAELRHVMTNLG--EKLTDEEVDEMIREADVDGDGQINYEEFVKVM 498
            +  F LFDK+ DG IT  EL   +  LG     +EL+  +     +GN  + F +F++L  + + D+          D+EE+++++            F+VFD+D +G+ISA EL+ V+  LG  E    + V++MI   D + DG++++ EF  +M
Sbjct:   42 RRIFDLFDKNSDGIITVDELSRALNLLGLETDLSELESTVKSFTREGNIGLQFEDFISL-HQSLNDSYFAYGGEDEDDNEEDMRKSILSQEEADSFGGFKVFDEDGDGYISARELQMVLGKLGFSEGSEIDRVEKMIVSVDSNRDGRVDFFEFKDMM 197          
BLAST of CB290650 vs. ExPASy Swiss-Prot
Match: CML39_ARATH (Calcium-binding protein CML39 OS=Arabidopsis thaliana GN=CML39 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.907e-13
Identity = 40/142 (28.17%), Postives = 79/142 (55.63%), Query Frame = 1
Query:   79 DDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELK--EAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 498
            +++  + +  F+  D + DG I+ +EL    ++LG+  ++ E +  +   D DG+G +D  EF  L+    + T+ E++ K  EAFR++  D    I+   L+ ++  LGE  T ++   MI+  D++ DG ++++EF  +M
Sbjct:   17 EEKNRDLEAVFAYMDANRDGRISAEELKKSFKTLGEQMSDEEAEAAVKLSDIDGDGMLDINEFALLIKGNDEFTEEEKKRKIMEAFRMYIADGEDCITPGSLKMMLMKLGESRTTDDCKVMIQAFDLNADGVLSFDEFALMM 158          
BLAST of CB290650 vs. ExPASy Swiss-Prot
Match: MYL10_HUMAN (Myosin regulatory light chain 10 OS=Homo sapiens GN=MYL10 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.163e-12
Identity = 41/133 (30.83%), Postives = 70/133 (52.63%), Query Frame = 1
Query:  103 EAFSLFDKDGDGCITTKELGTVMRSLGQ-NPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 498
            +AF++ D++ DG I  ++L     +LG+ N    EL+ M+ E      G I+F  FL +   K+K TD EE +  AF+VFD +  GF+ A  ++  +    ++ ++EEV +M      D  G ++Y     V+
Sbjct:   91 QAFTIMDQNRDGFIDKEDLRDTFAALGRINVKNEELEAMVKEAP----GPINFTVFLTMFGEKLKGTDPEETILHAFKVFDTEGKGFVKADVIKEKLMTQADRFSEEEVKQMFAAFPPDVCGNLDYRNLCYVI 219          
BLAST of CB290650 vs. ExPASy Swiss-Prot
Match: MLRS_RAT (Myosin regulatory light chain 2, skeletal muscle isoform OS=Rattus norvegicus GN=Mylpf PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.984e-12
Identity = 43/139 (30.94%), Postives = 71/139 (51.08%), Query Frame = 1
Query:   85 QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQ-NPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 498
            QI EFKEAF++ D++ DG I  ++L     ++G+ N    EL  M+ E     +G I+F  FL +   K+K  D E+ +  AF+V D +  G I    L  ++T   ++ + EE+  M      D  G ++Y+    V+
Sbjct:   26 QIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEA----SGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKQFLEELLTTQCDRFSQEEIKNMWAAFPPDVGGNVDYKNICYVI 160          
BLAST of CB290650 vs. ExPASy Swiss-Prot
Match: MLRS_RABIT (Myosin regulatory light chain 2, skeletal muscle isoform type 2 OS=Oryctolagus cuniculus GN=MYLPF PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.984e-12
Identity = 43/139 (30.94%), Postives = 71/139 (51.08%), Query Frame = 1
Query:   85 QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQ-NPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 498
            QI EFKEAF++ D++ DG I  ++L     ++G+ N    EL  M+ E     +G I+F  FL +   K+K  D E+ +  AF+V D +  G I    L  ++T   ++ + EE+  M      D  G ++Y+    V+
Sbjct:   27 QIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEA----SGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKQFLEELLTTQCDRFSQEEIKNMWAAFPPDVGGNVDYKNICYVI 161          
BLAST of CB290650 vs. ExPASy Swiss-Prot
Match: MLRS_MOUSE (Myosin regulatory light chain 2, skeletal muscle isoform OS=Mus musculus GN=Mylpf PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.984e-12
Identity = 43/139 (30.94%), Postives = 71/139 (51.08%), Query Frame = 1
Query:   85 QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQ-NPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 498
            QI EFKEAF++ D++ DG I  ++L     ++G+ N    EL  M+ E     +G I+F  FL +   K+K  D E+ +  AF+V D +  G I    L  ++T   ++ + EE+  M      D  G ++Y+    V+
Sbjct:   26 QIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEA----SGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKQFLEELLTTQCDRFSQEEIKNMWAAFPPDVGGNVDYKNICYVI 160          
BLAST of CB290650 vs. ExPASy Swiss-Prot
Match: MLRS_HUMAN (Myosin regulatory light chain 2, skeletal muscle isoform OS=Homo sapiens GN=MYLPF PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.984e-12
Identity = 43/139 (30.94%), Postives = 71/139 (51.08%), Query Frame = 1
Query:   85 QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQ-NPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 498
            QI EFKEAF++ D++ DG I  ++L     ++G+ N    EL  M+ E     +G I+F  FL +   K+K  D E+ +  AF+V D +  G I    L  ++T   ++ + EE+  M      D  G ++Y+    V+
Sbjct:   26 QIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEA----SGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKKFLEELLTTQCDRFSQEEIKNMWAAFPPDVGGNVDYKNICYVI 160          
The following BLAST results are available for this feature:
BLAST of CB290650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 477
Match NameE-valueIdentityDescription
CAVP_BRAFL5.222e-1330.61Calcium vector protein OS=Branchiostoma floridae P... [more]
CML20_ORYSJ6.820e-1336.17Probable calcium-binding protein CML20 OS=Oryza sa... [more]
CAVP_BRALA6.820e-1331.08Calcium vector protein OS=Branchiostoma lanceolatu... [more]
ALLB3_BETVE6.820e-1330.57Calcium-binding allergen Bet v 3 OS=Betula verruco... [more]
CML39_ARATH8.907e-1328.17Calcium-binding protein CML39 OS=Arabidopsis thali... [more]
MYL10_HUMAN1.163e-1230.83Myosin regulatory light chain 10 OS=Homo sapiens G... [more]
MLRS_RAT1.984e-1230.94Myosin regulatory light chain 2, skeletal muscle i... [more]
MLRS_RABIT1.984e-1230.94Myosin regulatory light chain 2, skeletal muscle i... [more]
MLRS_MOUSE1.984e-1230.94Myosin regulatory light chain 2, skeletal muscle i... [more]
MLRS_HUMAN1.984e-1230.94Myosin regulatory light chain 2, skeletal muscle i... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cg06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cg06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290650 ID=CB290650; Name=CB290650; organism=Citrus sinensis; type=EST; length=815bp
GCGTTATTTGATTTTGCGGGGAAAAAAAAAACCTAGTTTTCGGTGTAAAA
AAAGAAGAAAATGGCGGATCAGCTCACCGACGATCAGATCTCCGAGTTTA
AAGAAGCCTTCAGCTTGTTCGACAAGGACGGCGACGGTTGCATTACCACC
AAGGAGCTTGGCACTGTTATGAGGTCACTGGGTCAGAACCCCACTGAGGC
TGAGCTCCAGGACATGATCAATGAAGTGGATGCTGATGGTAATGGAACTA
TTGATTTTCCTGAATTCCTAAACCTCATGGCCAGGAAGATGAAGGATACC
GACTCTGAGGAGGAGCTGAAAGAGGCCTTCCGGGTTTTCGACAAGGATCA
GAATGGTTTCATCTCAGCTGCTGAACTGCGTCATGTGATGACAAACCTTG
GGGAGAAGCTTACTGATGAGGAAGTCGATGAGATGATAAGGGAAGCTGAT
GTCGATGGTGATGGCCAGATAAATTATGAGGAATTTGTCAAGGTTATGAT
GGCTAAGTAAGTGACTCCACCCAACCAAAACTTCCTGGAAAAAGAAGAAA
TTGGTTGATTAATATAATTGGTTCCCTAGTTTCCTTTTTTATAAATTTTA
ATTTGATAACTCTGAGGTCAAGCTAAAGGAAGCATGTTGTCTCCTGCTTC
AATTTGTCTTGTGACTGGAGCAACTTTTCAGTTTTTTAATGTTTTAGTTT
TTTTCCGCTCTTCTGTGAACATTGTTTCTGTTAAATGAGTGACTCGTTGA
TCTGCCTTATTTCTTATTTCGAGATTTTGTGCATAAGAAATTGATATGTG
ATGACTTAATGTTAA
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