CB290658

Overview
NameCB290658
Unique NameCB290658
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: PABP1_MOUSE (Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 1.333e-67
Identity = 126/213 (59.15%), Postives = 162/213 (76.06%), Query Frame = 1
Query:  205 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLAESTTDEDLKKFFGEYG 837
            S   +   SLYVGDL  +VT++ LY+ FS  G +LS+RVCRD+ TRRSLGY YVN+  PADA RALD +NF  +  K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+FGNILSCK+  D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F  ++ERE    A   +F NV++KN  E   DE LK+ FG++G
Sbjct:    4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFG 215          

HSP 2 Score: 140.584 bits (353), Expect = 1.066e-32
Identity = 82/224 (36.61%), Postives = 126/224 (56.25%), Query Frame = 1
Query:  229 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSI--RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLAESTTDEDLKKFFGEYGTI 843
            ++++ +LD ++ +  LYD FS  G +LS +V  D     S GYG+V++     A RA++ +N   LN++ + +        R+  +  R     N++IKN  + +D + L + F  FG  LS K+ TD SG+SKGFGFV FE  E AQ A+D++NG  +N KQ++VG   +K ER+T  +K KF              N++VKNL +   DE L+K F  +GTI
Sbjct:  100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTI 320          

HSP 3 Score: 108.612 bits (270), Expect = 4.489e-23
Identity = 68/197 (34.52%), Postives = 107/197 (54.31%), Query Frame = 1
Query:  199 GASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHR-----------------DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 738
            GA   +F  T++Y+ +   ++ D +L +LF + G  LSV+V  D S + S G+G+V++    DA +A+D +N   LN K I +  + +                 D   R  G  N+++KNLD  ID + L   FS FG I S K+  +G G+SKGFGFV F + E A  A+ ++NG ++  K ++V    RK+ER+
Sbjct:  184 GARAKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375          
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: PABP4_HUMAN (Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.741e-67
Identity = 126/214 (58.88%), Postives = 162/214 (75.70%), Query Frame = 1
Query:  202 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLAESTTDEDLKKFFGEYG 837
            A+ + +   SLYVGDL  +VT++ LY+ FS  G VLS+RVCRD+ TRRSLGY YVN+  PADA RALD +NF  +  K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+FGNILSCK+  D +G SKG+ FV FE +E+A  AI+K+NGML+ND++VFVG F  ++ERE  +  K K F NV++KN  E   DE LK+ F ++G
Sbjct:    3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG 215          

HSP 2 Score: 125.176 bits (313), Expect = 4.634e-28
Identity = 73/224 (32.59%), Postives = 124/224 (55.36%), Query Frame = 1
Query:  229 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI-MYSHRDPSIRKSGTG-----NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLAESTTDEDLKKFFGEYGTI 843
            ++++ +LD ++ +  LYD FS  G +LS +V  D     S GY +V++     A +A++ +N   LN++ + +  +  R     + G       N++IKN  + +D ++L + FS FG  LS K+  D +G+SKGFGFV +E  E A  A++++NG  I+ K +FVG   +K ER+   +K KF              N+++KNL ++  DE L+K F  +G+I
Sbjct:  100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQ-AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSI 320          

HSP 3 Score: 109.768 bits (273), Expect = 2.015e-23
Identity = 71/213 (33.33%), Postives = 112/213 (52.58%), Query Frame = 1
Query:  199 GASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSI----------------RIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLA 789
            GA   +F  T++Y+ +    V D  L +LFSQ G+ LSV+V RD    +S G+G+V+Y    DA +A++ +N   ++ K I                R     +   I +    N++IKNLD +ID + L   FS FG+I S K+  +  G+SKGFGFV F + E A  A+ ++NG ++  K ++V    RK+ER     K    N +++ +A
Sbjct:  184 GAKAKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER-----KAHLTNQYMQRVA 387          
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: PABP1_HUMAN (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2)

HSP 1 Score: 256.144 bits (653), Expect = 1.741e-67
Identity = 126/213 (59.15%), Postives = 161/213 (75.59%), Query Frame = 1
Query:  205 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLAESTTDEDLKKFFGEYG 837
            S   +   SLYVGDL  +VT++ LY+ FS  G +LS+RVCRD+ TRRSLGY YVN+  PADA RALD +NF  +  K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+FGNILSCK+  D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F  ++ERE    A   +F NV++KN  E   DE LK  FG++G
Sbjct:    4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFG 215          

HSP 2 Score: 141.739 bits (356), Expect = 4.785e-33
Identity = 83/224 (37.05%), Postives = 126/224 (56.25%), Query Frame = 1
Query:  229 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSI--RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLAESTTDEDLKKFFGEYGTI 843
            ++++ +LD ++ +  LYD FS  G +LS +V  D     S GYG+V++     A RA++ +N   LN++ + +        R+  +  R     N++IKN  + +D + L D F  FG  LS K+ TD SG+SKGFGFV FE  E AQ A+D++NG  +N KQ++VG   +K ER+T  +K KF              N++VKNL +   DE L+K F  +GTI
Sbjct:  100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTI 320          

HSP 3 Score: 110.153 bits (274), Expect = 1.543e-23
Identity = 69/197 (35.03%), Postives = 107/197 (54.31%), Query Frame = 1
Query:  199 GASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHR-----------------DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 738
            GA   +F  T++Y+ +   ++ D +L DLF + G  LSV+V  D S + S G+G+V++    DA +A+D +N   LN K I +  + +                 D   R  G  N+++KNLD  ID + L   FS FG I S K+  +G G+SKGFGFV F + E A  A+ ++NG ++  K ++V    RK+ER+
Sbjct:  184 GARAKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375          
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: PABP1_BOVIN (Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.741e-67
Identity = 126/213 (59.15%), Postives = 161/213 (75.59%), Query Frame = 1
Query:  205 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLAESTTDEDLKKFFGEYG 837
            S   +   SLYVGDL  +VT++ LY+ FS  G +LS+RVCRD+ TRRSLGY YVN+  PADA RALD +NF  +  K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+FGNILSCK+  D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F  ++ERE    A   +F NV++KN  E   DE LK  FG++G
Sbjct:    4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFG 215          

HSP 2 Score: 141.739 bits (356), Expect = 4.785e-33
Identity = 83/224 (37.05%), Postives = 126/224 (56.25%), Query Frame = 1
Query:  229 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSI--RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLAESTTDEDLKKFFGEYGTI 843
            ++++ +LD ++ +  LYD FS  G +LS +V  D     S GYG+V++     A RA++ +N   LN++ + +        R+  +  R     N++IKN  + +D + L D F  FG  LS K+ TD SG+SKGFGFV FE  E AQ A+D++NG  +N KQ++VG   +K ER+T  +K KF              N++VKNL +   DE L+K F  +GTI
Sbjct:  100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTI 320          

HSP 3 Score: 110.153 bits (274), Expect = 1.543e-23
Identity = 69/197 (35.03%), Postives = 107/197 (54.31%), Query Frame = 1
Query:  199 GASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHR-----------------DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 738
            GA   +F  T++Y+ +   ++ D +L DLF + G  LSV+V  D S + S G+G+V++    DA +A+D +N   LN K I +  + +                 D   R  G  N+++KNLD  ID + L   FS FG I S K+  +G G+SKGFGFV F + E A  A+ ++NG ++  K ++V    RK+ER+
Sbjct:  184 GARAKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375          
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: PABP_ASPNC (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=pab1 PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 2.274e-67
Identity = 122/215 (56.74%), Postives = 163/215 (75.81%), Query Frame = 1
Query:  205 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET--VAIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTI 843
            + NQ  + SLYVG+LD +VT++ LY+LFS +GQV S+RVCRD  TRRSLGY YVNY N AD  RAL+ LN+T +  K  RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNILSCK+A D  G SKG+GFV +E  E+A NAI  +NGML+NDK+VFVGH + K++R++    +K  F NV++KNL     D++ +K F ++G I
Sbjct:   47 AANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEI 261          

HSP 2 Score: 127.102 bits (318), Expect = 1.220e-28
Identity = 76/223 (34.08%), Postives = 120/223 (53.81%), Query Frame = 1
Query:  229 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY--SHRDPSIR----KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE------------TVAIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTI 843
            ++++ +LD  + +  L+D F+  G +LS +V +D     S GYG+V+Y     A  A+  +N   LN+K + + +  S +D   +    K+   N++IKNLD  ID       F  FG I S  ++ D  G+S+GFGFV F   ESAQ A++++N   I  ++++VG   +K ERE              A K +  N++VKNL +   DE L++ FG YGTI
Sbjct:  143 NVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLRELFGPYGTI 364          
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: PABP_COCIM (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Coccidioides immitis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 3.878e-67
Identity = 120/209 (57.42%), Postives = 163/209 (77.99%), Query Frame = 1
Query:  223 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET--VAIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTI 843
            + SLYVG+LD +VT++ L++LFS +GQV S+RVCRD  TRRSLGY YVNY N AD  RAL+ LN+T +  +  RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNILSCK+A D  G SKG+GFV +E  E+AQNAI  +NGML+NDK+VFVGH + K++R++    +K  F NV+VKN+ + TT+E+ +  F ++G I
Sbjct:   54 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEI 262          

HSP 2 Score: 114.775 bits (286), Expect = 6.264e-25
Identity = 69/224 (30.80%), Postives = 120/224 (53.57%), Query Frame = 1
Query:  229 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY--SHRDPSIR----KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE------------TVAIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTI 843
            ++++ +LD  + +  L+D F+  G +LS +V +D     S GYG+V+Y     A  A+  +N   LN+K + + +  + +D   +    K+   N+++KN+D+    +   D F  FG I S  +A D  SG+S+GFGFV F + ++A  A++ LN      ++++VG   +K ERE              A K +  N+++KNL++   DE L++ F  YGTI
Sbjct:  144 NVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGTI 366          

HSP 3 Score: 81.6481 bits (200), Expect = 5.876e-15
Identity = 59/241 (24.48%), Postives = 102/241 (42.32%), Query Frame = 1
Query:  226 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSI---RIMYSH-RDPSIRKSGTG------------NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQS-----------------------------------------------------KGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 741
            T++YV ++D + T+ +  DLF + G++ S  + RD  + +S G+G+VN+ +  +AA A++ LN      + +   R    H R+  +RK                N++IKNL   ID + L + FSS+G I S K+  D + +S                                                     KGFGFV F + + A  A+ ++N  +++ K ++V    RK  R +
Sbjct:  236 TNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGTITSAKVMRDFAPESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAENKDNKENKAESKKSEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRRS 476          
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: PABP_ASPTN (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=pab1 PE=3 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 5.065e-67
Identity = 122/218 (55.96%), Postives = 166/218 (76.15%), Query Frame = 1
Query:  196 AGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET--VAIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTI 843
            A  S +Q  + SLYVG+LD +VT++ LY+LFS +GQV S+RVCRD  TRRSLGY YVNY N AD  RAL+ LN+T +  K  RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNILSCK+A D  G SKG+GFV +E  E+A NAI  +NGML+NDK+VFVGH + K++R++    +K  F NV++KNL +  ++E+ ++ F ++G I
Sbjct:   38 AAPSTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGEI 255          

HSP 2 Score: 122.865 bits (307), Expect = 2.300e-27
Identity = 72/223 (32.29%), Postives = 120/223 (53.81%), Query Frame = 1
Query:  229 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY--SHRDPSIR----KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE------------TVAIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTI 843
            ++++ +LD  + +  L+D F+  G +LS +V +D     S GYG+V+Y     A  A+  +N   LN+K + + +  S +D   +    K+   N++IKNLD+ I  +     F  FG I S  ++ D  G+S+GFGFV +   +SAQ A+D++N   +  ++++VG   +K ERE              A K +  N++VKNL +   DE L++ F  YGTI
Sbjct:  137 NVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAVDEMNDKEVKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLREMFAPYGTI 358          
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: PABP_ASPOR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus oryzae GN=pab1 PE=3 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 5.065e-67
Identity = 119/209 (56.94%), Postives = 162/209 (77.51%), Query Frame = 1
Query:  223 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET--VAIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTI 843
            + SLYVG+LD +VT++ LY+LFS +GQV S+RVCRD  TRRSLGY YVNY N AD  RAL+ LN+T +  K  RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNILSCK+A D  G SKG+GFV +E  E+A NAI  +NGML+NDK+VFVGH + K++R++    +K  F NV++KN+ +  T+E+ ++ F ++G I
Sbjct:   48 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEI 256          

HSP 2 Score: 127.102 bits (318), Expect = 1.220e-28
Identity = 74/223 (33.18%), Postives = 122/223 (54.71%), Query Frame = 1
Query:  229 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY--SHRDPSIR----KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE------------TVAIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTI 843
            ++++ +LD  + +  L+D F+  G +LS +V +D     S GYG+V+Y     A  A+  +N   LN+K + + +  S +D   +    K+   N++IKN+D+ +  +   + F  FG I S  ++ D  G+S+GFGFV F   ESAQ A+D++N   I  ++++VG   +K ERE              A K +  N++VKNL +   DE L++ FG YGTI
Sbjct:  138 NVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTI 359          
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 5.065e-67
Identity = 125/213 (58.69%), Postives = 160/213 (75.12%), Query Frame = 1
Query:  205 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLAESTTDEDLKKFFGEYG 837
            S   +   SLYVGDL  + T++ LY+ FS  G +LS+RVCRD+ TRRSLGY YVN+  PADA RALD +NF  +  K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+FGNILSCK+  D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F  ++ERE    A   +F NV++KN  E   DE LK  FG++G
Sbjct:    4 SAPSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFG 215          

HSP 2 Score: 141.739 bits (356), Expect = 4.785e-33
Identity = 83/224 (37.05%), Postives = 126/224 (56.25%), Query Frame = 1
Query:  229 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSI--RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLAESTTDEDLKKFFGEYGTI 843
            ++++ +LD ++ +  LYD FS  G +LS +V  D     S GYG+V++     A RA++ +N   LN++ + +        R+  +  R     N++IKN  + +D + L D F  FG  LS K+ TD SG+SKGFGFV FE  E AQ A+D++NG  +N KQ++VG   +K ER+T  +K KF              N++VKNL +   DE L+K F  +GTI
Sbjct:  100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTI 320          

HSP 3 Score: 110.153 bits (274), Expect = 1.543e-23
Identity = 69/197 (35.03%), Postives = 107/197 (54.31%), Query Frame = 1
Query:  199 GASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHR-----------------DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 738
            GA   +F  T++Y+ +   ++ D +L DLF + G  LSV+V  D S + S G+G+V++    DA +A+D +N   LN K I +  + +                 D   R  G  N+++KNLD  ID + L   FS FG I S K+  +G G+SKGFGFV F + E A  A+ ++NG ++  K ++V    RK+ER+
Sbjct:  184 GARAKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375          
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: PABP_EMENI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Emericella nidulans GN=pab1 PE=2 SV=2)

HSP 1 Score: 253.062 bits (645), Expect = 1.474e-66
Identity = 122/220 (55.45%), Postives = 165/220 (75.00%), Query Frame = 1
Query:  190 VAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET--VAIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTI 843
            V A A+ +Q  + SLYVG+LD +VT++ LY+LFS +GQV S+RVCRD  TRRSLGY YVNY + A   RALD LN+T +  K  RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNILSCK+A D  G SKG+GFV +E  E+A NAI  +NGML+NDK+VFVGH + K++R++    +K  F N+++KN+     DE+ +K F ++G I
Sbjct:   30 VEAPATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEI 249          

HSP 2 Score: 123.635 bits (309), Expect = 1.348e-27
Identity = 72/223 (32.29%), Postives = 121/223 (54.26%), Query Frame = 1
Query:  229 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY--SHRDPSIR----KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE------------TVAIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTI 843
            ++++ +LD  + +  L+D F+  G +LS +V +D     S GYG+V+Y     A  A+  +N   LN+K + + +  S +D   +    K+   NI+IKN+D  ++ +     F  FG I S  ++ D  G+S+GFGFV F   ESAQ A++++N   +  ++++VG   +K ERE              A K +  N++VKNL +   D+ L++ FG YGTI
Sbjct:  131 NVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFGPYGTI 352          
The following BLAST results are available for this feature:
BLAST of CB290658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
PABP1_MOUSE1.333e-6759.15Polyadenylate-binding protein 1 OS=Mus musculus GN... [more]
PABP4_HUMAN1.741e-6758.88Polyadenylate-binding protein 4 OS=Homo sapiens GN... [more]
PABP1_HUMAN1.741e-6759.15Polyadenylate-binding protein 1 OS=Homo sapiens GN... [more]
PABP1_BOVIN1.741e-6759.15Polyadenylate-binding protein 1 OS=Bos taurus GN=P... [more]
PABP_ASPNC2.274e-6756.74Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_COCIM3.878e-6757.42Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPTN5.065e-6755.96Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPOR5.065e-6756.94Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP1_PONAB5.065e-6758.69Polyadenylate-binding protein 1 OS=Pongo abelii GN... [more]
PABP_EMENI1.474e-6655.45Polyadenylate-binding protein, cytoplasmic and nuc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cg10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cg10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290658 ID=CB290658; Name=CB290658; organism=Citrus sinensis; type=EST; length=845bp
GGTTTTTTCCCCTAGAATTATAGTCATAGAATCAGATTATTTATCCTGTT
ATCTCTCTAGATTTTTATTTGAGAACTAGCAAGAGAAGAGGGAAATAAAA
AAGCCAAAAAAAAAAAGAAGGATCTAGAAGTGGTAGTGATGGCACAGATT
CAGGTGCAACATCAAGCGCAAATGTCGGGGCCAAACGGAGTGGCGGCGGG
TGCGTCAGGGAACCAGTTCCTAACGACGTCTCTTTATGTTGGCGATCTCG
ATTTCAACGTGACCGATTCGCAGCTTTATGATCTGTTCAGCCAGGTCGGT
CAAGTTCTGTCGGTTAGGGTTTGTCGGGACCTGAGCACCAGGCGCTCACT
CGGCTATGGTTACGTTAACTACGCCAACCCTGCAGATGCGGCAAGGGCAC
TGGATGTTCTTAACTTCACTCCACTTAATAATAAGTCCATTAGAATCATG
TATTCCCATCGGGATCCTAGTATTCGGAAAAGCGGTACTGGGAACATATT
TATCAAGAATTTGGACAAGTCTATTGATCACAAAGCATTACACGATACAT
TTTCTTCATTCGGAAACATTCTTTCTTGTAAGATAGCTACTGATGGTTCT
GGCCAGTCCAAAGGTTTCGGTTTTGTGCAATTTGAGAACAAAGAATCTGC
TCAAAATGCTATTGATAAGTTAAATGGCATGCTTATTAATGATAAACAAG
TGTTTGTTGGGCACTTTCTTCGTAAGCAGGAAAGAGAAACTGTAGCAATT
AAAACAAAATTCAATAACGTATTTGTCAAAAACCTTGCTGAGTCCACTAC
AGATGAAGATTTGAAGAAATTTTTTGGTGAGTATGGAACAATTAC
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