CB290658

Overview
NameCB290658
Unique NameCB290658
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: PUF60_RAT (Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus GN=Puf60 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 6.081e-12
Identity = 46/201 (22.89%), Postives = 94/201 (46.77%), Query Frame = 1
Query:  139 MAQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIRKSGT-----GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVG 711
            MA + +     +S    +AA       +   +YVG + + + +  +   F+  G + S+ +  D  T +  G+ +V Y  P  A  AL+ +N   L  ++I++          P I +          I++ ++ + +    +   F +FG I SC +A D + G+ KG+GF+++E  +S+Q+A+  +N   +  + + VG
Sbjct:  105 MAAVTMGFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 305          
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: PUF60_PONAB (Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii GN=PUF60 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.081e-12
Identity = 46/201 (22.89%), Postives = 94/201 (46.77%), Query Frame = 1
Query:  139 MAQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIRKSGT-----GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVG 711
            MA + +     +S    +AA       +   +YVG + + + +  +   F+  G + S+ +  D  T +  G+ +V Y  P  A  AL+ +N   L  ++I++          P I +          I++ ++ + +    +   F +FG I SC +A D + G+ KG+GF+++E  +S+Q+A+  +N   +  + + VG
Sbjct:   99 MAAVTMGFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 299          
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: PUF60_MOUSE (Poly(U)-binding-splicing factor PUF60 OS=Mus musculus GN=Puf60 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 6.081e-12
Identity = 46/201 (22.89%), Postives = 94/201 (46.77%), Query Frame = 1
Query:  139 MAQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIRKSGT-----GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVG 711
            MA + +     +S    +AA       +   +YVG + + + +  +   F+  G + S+ +  D  T +  G+ +V Y  P  A  AL+ +N   L  ++I++          P I +          I++ ++ + +    +   F +FG I SC +A D + G+ KG+GF+++E  +S+Q+A+  +N   +  + + VG
Sbjct:  105 MAAVTMGFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 305          
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: PUF60_HUMAN (Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens GN=PUF60 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.081e-12
Identity = 46/201 (22.89%), Postives = 94/201 (46.77%), Query Frame = 1
Query:  139 MAQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIRKSGT-----GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVG 711
            MA + +     +S    +AA       +   +YVG + + + +  +   F+  G + S+ +  D  T +  G+ +V Y  P  A  AL+ +N   L  ++I++          P I +          I++ ++ + +    +   F +FG I SC +A D + G+ KG+GF+++E  +S+Q+A+  +N   +  + + VG
Sbjct:  100 MAAVTMGFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 300          
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: PUF60_BOVIN (Poly(U)-binding-splicing factor PUF60 OS=Bos taurus GN=PUF60 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.081e-12
Identity = 46/201 (22.89%), Postives = 94/201 (46.77%), Query Frame = 1
Query:  139 MAQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIRKSGT-----GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVG 711
            MA + +     +S    +AA       +   +YVG + + + +  +   F+  G + S+ +  D  T +  G+ +V Y  P  A  AL+ +N   L  ++I++          P I +          I++ ++ + +    +   F +FG I SC +A D + G+ KG+GF+++E  +S+Q+A+  +N   +  + + VG
Sbjct:   71 MAAVTMGFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 271          
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: PU60B_DANRE (Poly(U)-binding-splicing factor PUF60-B OS=Danio rerio GN=puf60b PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 7.942e-12
Identity = 46/201 (22.89%), Postives = 92/201 (45.77%), Query Frame = 1
Query:  139 MAQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIRK-----SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVG 711
            MA + +     +S    VAA       +   +YVG + + + +  +   F+  G + S+ +  D  T +  G+ +V Y  P  A  AL+ +N   L  ++I++          P I +          I++ ++   +    +   F +FG I SC +A +  +G+ KGFGF+++E  +S+ +A+  +N   +  + + VG
Sbjct:   57 MAAVTMGFGDPLSSLQSVAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPGSIGQAQPIIEQLAEEARAYNRIYVASIHPDLSDDDIKSVFEAFGKIKSCMLAREPTTGKHKGFGFIEYEKPQSSLDAVSSMNLFDLGGQYLRVG 257          
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: MRD1_USTMA (Multiple RNA-binding domain-containing protein 1 OS=Ustilago maydis GN=MRD1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.942e-12
Identity = 50/177 (28.25%), Postives = 82/177 (46.33%), Query Frame = 1
Query:  172 MSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRR-----SLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDP-----SIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 672
            + GP G  AG       T  LYV +L F+ TD +L   F  +      R+      RR     S+GYG+V + +   A  A   ++   L+  ++ + ++ R+      SI   G+  I IKNL      + + D FSS G + S ++       ++GFGFV++     AQ+A++ L
Sbjct:  605 LDGPAGAGAGDEAVDGAT--LYVKNLSFSTTDERLTAFFHGLSDFAFARIQTKPDPRRPGARLSMGYGFVGFKSIDAARTAQKAMDGKVLDAHTLVVTFARRNAEASTTSISSGGSTKILIKNLPFEATKRDIRDLFSSQGQLKSVRLPKKFDNTTRGFGFVEYSTVREAQSAMEAL 779          
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: SQD_DROME (RNA-binding protein squid OS=Drosophila melanogaster GN=sqd PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 1.355e-11
Identity = 51/189 (26.98%), Postives = 89/189 (47.09%), Query Frame = 1
Query:  175 SGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 738
            +G +   + ASG +     L+VG L +  T+ +L D F + G++ S+ V  D  T RS G+ ++ + N  +A   +   +   +N+K +       DP   K+  G IF+  L   I  + +   F  FGNI+  ++  D    Q KGF F+ F++++   + + K     I  K+V V     K E +
Sbjct:   39 NGSSDNQSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTN-TEAIDKVSAADEHIINSKKV-------DPKKAKARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLL-KTPKQKIAGKEVDVKRATPKPENQ 218          
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: NUCL_RAT (Nucleolin OS=Rattus norvegicus GN=Ncl PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 1.355e-11
Identity = 53/208 (25.48%), Postives = 97/208 (46.63%), Query Frame = 1
Query:  229 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS----HRDPSIRKSGTGN-----IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLAESTTDEDLKKFF 825
            +L   +L FN+T+ +L ++F    ++  V         RS G  Y+ + + ADA + L+      ++ +S+ + Y+     R     K+ T +     + + NL  S   + L + F     I   K+  +  G+SKG+ F++F + E A+ A++  N M I  + + +   L+       A       +FVK L+E TT+E LK+ F
Sbjct:  398 TLLAKNLSFNITEDELKEVFEDAVEIRLVS-----QDGRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLE--LQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESF 595          
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: YHKF_SCHPO (Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe GN=SPBC660.15 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.311e-11
Identity = 48/160 (30.00%), Postives = 77/160 (48.12%), Query Frame = 1
Query:  232 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 708
            +++G L++  TD  L D F Q G+VL   V RD +T RS G+G++ + NP      +   +   L+ K I        P   +  T  +F+  +      +   + F+ FG +L   +  D  +G+ +GFGFV +EN ESA  A      + I+ K V V
Sbjct:  165 MFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEHH--LDGKIID--PKRAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYEN-ESAVEATMSQPYITIHGKPVEV 319          
The following BLAST results are available for this feature:
BLAST of CB290658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
PUF60_RAT6.081e-1222.89Poly(U)-binding-splicing factor PUF60 OS=Rattus no... [more]
PUF60_PONAB6.081e-1222.89Poly(U)-binding-splicing factor PUF60 OS=Pongo abe... [more]
PUF60_MOUSE6.081e-1222.89Poly(U)-binding-splicing factor PUF60 OS=Mus muscu... [more]
PUF60_HUMAN6.081e-1222.89Poly(U)-binding-splicing factor PUF60 OS=Homo sapi... [more]
PUF60_BOVIN6.081e-1222.89Poly(U)-binding-splicing factor PUF60 OS=Bos tauru... [more]
PU60B_DANRE7.942e-1222.89Poly(U)-binding-splicing factor PUF60-B OS=Danio r... [more]
MRD1_USTMA7.942e-1228.25Multiple RNA-binding domain-containing protein 1 O... [more]
SQD_DROME1.355e-1126.98RNA-binding protein squid OS=Drosophila melanogast... [more]
NUCL_RAT1.355e-1125.48Nucleolin OS=Rattus norvegicus GN=Ncl PE=1 SV=3[more]
YHKF_SCHPO2.311e-1130.00Uncharacterized RNA-binding protein C660.15 OS=Sch... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cg10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cg10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290658 ID=CB290658; Name=CB290658; organism=Citrus sinensis; type=EST; length=845bp
GGTTTTTTCCCCTAGAATTATAGTCATAGAATCAGATTATTTATCCTGTT
ATCTCTCTAGATTTTTATTTGAGAACTAGCAAGAGAAGAGGGAAATAAAA
AAGCCAAAAAAAAAAAGAAGGATCTAGAAGTGGTAGTGATGGCACAGATT
CAGGTGCAACATCAAGCGCAAATGTCGGGGCCAAACGGAGTGGCGGCGGG
TGCGTCAGGGAACCAGTTCCTAACGACGTCTCTTTATGTTGGCGATCTCG
ATTTCAACGTGACCGATTCGCAGCTTTATGATCTGTTCAGCCAGGTCGGT
CAAGTTCTGTCGGTTAGGGTTTGTCGGGACCTGAGCACCAGGCGCTCACT
CGGCTATGGTTACGTTAACTACGCCAACCCTGCAGATGCGGCAAGGGCAC
TGGATGTTCTTAACTTCACTCCACTTAATAATAAGTCCATTAGAATCATG
TATTCCCATCGGGATCCTAGTATTCGGAAAAGCGGTACTGGGAACATATT
TATCAAGAATTTGGACAAGTCTATTGATCACAAAGCATTACACGATACAT
TTTCTTCATTCGGAAACATTCTTTCTTGTAAGATAGCTACTGATGGTTCT
GGCCAGTCCAAAGGTTTCGGTTTTGTGCAATTTGAGAACAAAGAATCTGC
TCAAAATGCTATTGATAAGTTAAATGGCATGCTTATTAATGATAAACAAG
TGTTTGTTGGGCACTTTCTTCGTAAGCAGGAAAGAGAAACTGTAGCAATT
AAAACAAAATTCAATAACGTATTTGTCAAAAACCTTGCTGAGTCCACTAC
AGATGAAGATTTGAAGAAATTTTTTGGTGAGTATGGAACAATTAC
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