CB290658
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: PUF60_RAT (Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus GN=Puf60 PE=2 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 6.081e-12 Identity = 46/201 (22.89%), Postives = 94/201 (46.77%), Query Frame = 1 Query: 139 MAQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIRKSGT-----GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVG 711 MA + + +S +AA + +YVG + + + + + F+ G + S+ + D T + G+ +V Y P A AL+ +N L ++I++ P I + I++ ++ + + + F +FG I SC +A D + G+ KG+GF+++E +S+Q+A+ +N + + + VG Sbjct: 105 MAAVTMGFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 305
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: PUF60_PONAB (Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii GN=PUF60 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 6.081e-12 Identity = 46/201 (22.89%), Postives = 94/201 (46.77%), Query Frame = 1 Query: 139 MAQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIRKSGT-----GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVG 711 MA + + +S +AA + +YVG + + + + + F+ G + S+ + D T + G+ +V Y P A AL+ +N L ++I++ P I + I++ ++ + + + F +FG I SC +A D + G+ KG+GF+++E +S+Q+A+ +N + + + VG Sbjct: 99 MAAVTMGFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 299
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: PUF60_MOUSE (Poly(U)-binding-splicing factor PUF60 OS=Mus musculus GN=Puf60 PE=2 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 6.081e-12 Identity = 46/201 (22.89%), Postives = 94/201 (46.77%), Query Frame = 1 Query: 139 MAQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIRKSGT-----GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVG 711 MA + + +S +AA + +YVG + + + + + F+ G + S+ + D T + G+ +V Y P A AL+ +N L ++I++ P I + I++ ++ + + + F +FG I SC +A D + G+ KG+GF+++E +S+Q+A+ +N + + + VG Sbjct: 105 MAAVTMGFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 305
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: PUF60_HUMAN (Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens GN=PUF60 PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 6.081e-12 Identity = 46/201 (22.89%), Postives = 94/201 (46.77%), Query Frame = 1 Query: 139 MAQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIRKSGT-----GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVG 711 MA + + +S +AA + +YVG + + + + + F+ G + S+ + D T + G+ +V Y P A AL+ +N L ++I++ P I + I++ ++ + + + F +FG I SC +A D + G+ KG+GF+++E +S+Q+A+ +N + + + VG Sbjct: 100 MAAVTMGFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 300
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: PUF60_BOVIN (Poly(U)-binding-splicing factor PUF60 OS=Bos taurus GN=PUF60 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 6.081e-12 Identity = 46/201 (22.89%), Postives = 94/201 (46.77%), Query Frame = 1 Query: 139 MAQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIRKSGT-----GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVG 711 MA + + +S +AA + +YVG + + + + + F+ G + S+ + D T + G+ +V Y P A AL+ +N L ++I++ P I + I++ ++ + + + F +FG I SC +A D + G+ KG+GF+++E +S+Q+A+ +N + + + VG Sbjct: 71 MAAVTMGFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 271
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: PU60B_DANRE (Poly(U)-binding-splicing factor PUF60-B OS=Danio rerio GN=puf60b PE=2 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 7.942e-12 Identity = 46/201 (22.89%), Postives = 92/201 (45.77%), Query Frame = 1 Query: 139 MAQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIRK-----SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVG 711 MA + + +S VAA + +YVG + + + + + F+ G + S+ + D T + G+ +V Y P A AL+ +N L ++I++ P I + I++ ++ + + F +FG I SC +A + +G+ KGFGF+++E +S+ +A+ +N + + + VG Sbjct: 57 MAAVTMGFGDPLSSLQSVAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPGSIGQAQPIIEQLAEEARAYNRIYVASIHPDLSDDDIKSVFEAFGKIKSCMLAREPTTGKHKGFGFIEYEKPQSSLDAVSSMNLFDLGGQYLRVG 257
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: MRD1_USTMA (Multiple RNA-binding domain-containing protein 1 OS=Ustilago maydis GN=MRD1 PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 7.942e-12 Identity = 50/177 (28.25%), Postives = 82/177 (46.33%), Query Frame = 1 Query: 172 MSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRR-----SLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDP-----SIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 672 + GP G AG T LYV +L F+ TD +L F + R+ RR S+GYG+V + + A A ++ L+ ++ + ++ R+ SI G+ I IKNL + + D FSS G + S ++ ++GFGFV++ AQ+A++ L Sbjct: 605 LDGPAGAGAGDEAVDGAT--LYVKNLSFSTTDERLTAFFHGLSDFAFARIQTKPDPRRPGARLSMGYGFVGFKSIDAARTAQKAMDGKVLDAHTLVVTFARRNAEASTTSISSGGSTKILIKNLPFEATKRDIRDLFSSQGQLKSVRLPKKFDNTTRGFGFVEYSTVREAQSAMEAL 779
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: SQD_DROME (RNA-binding protein squid OS=Drosophila melanogaster GN=sqd PE=1 SV=3) HSP 1 Score: 70.4774 bits (171), Expect = 1.355e-11 Identity = 51/189 (26.98%), Postives = 89/189 (47.09%), Query Frame = 1 Query: 175 SGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 738 +G + + ASG + L+VG L + T+ +L D F + G++ S+ V D T RS G+ ++ + N +A + + +N+K + DP K+ G IF+ L I + + F FGNI+ ++ D Q KGF F+ F++++ + + K I K+V V K E + Sbjct: 39 NGSSDNQSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTN-TEAIDKVSAADEHIINSKKV-------DPKKAKARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLL-KTPKQKIAGKEVDVKRATPKPENQ 218
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: NUCL_RAT (Nucleolin OS=Rattus norvegicus GN=Ncl PE=1 SV=3) HSP 1 Score: 70.4774 bits (171), Expect = 1.355e-11 Identity = 53/208 (25.48%), Postives = 97/208 (46.63%), Query Frame = 1 Query: 229 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS----HRDPSIRKSGTGN-----IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLAESTTDEDLKKFF 825 +L +L FN+T+ +L ++F ++ V RS G Y+ + + ADA + L+ ++ +S+ + Y+ R K+ T + + + NL S + L + F I K+ + G+SKG+ F++F + E A+ A++ N M I + + + L+ A +FVK L+E TT+E LK+ F Sbjct: 398 TLLAKNLSFNITEDELKEVFEDAVEIRLVS-----QDGRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLE--LQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESF 595
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: YHKF_SCHPO (Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe GN=SPBC660.15 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 2.311e-11 Identity = 48/160 (30.00%), Postives = 77/160 (48.12%), Query Frame = 1 Query: 232 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 708 +++G L++ TD L D F Q G+VL V RD +T RS G+G++ + NP + + L+ K I P + T +F+ + + + F+ FG +L + D +G+ +GFGFV +EN ESA A + I+ K V V Sbjct: 165 MFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEHH--LDGKIID--PKRAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYEN-ESAVEATMSQPYITIHGKPVEV 319 The following BLAST results are available for this feature:
BLAST of CB290658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 170
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Sequences
The
following sequences are available for this feature:
EST sequence >CB290658 ID=CB290658; Name=CB290658; organism=Citrus sinensis; type=EST; length=845bpback to top |