CB290658

Overview
NameCB290658
Unique NameCB290658
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: TSAP1_DANRE (tRNA selenocysteine 1-associated protein 1 OS=Danio rerio GN=trnau1ap PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.723e-11
Identity = 46/155 (29.68%), Postives = 80/155 (51.61%), Query Frame = 1
Query:  229 SLYVGDLDFNVTDSQLYDLFSQVGQ-VLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSG---TGNIFIKNLDKSIDHKALHDTFS-SFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNG 678
            SL++G+L+  + +  +   F+Q+G+ V+ +R+ RD  T ++ GYG+V  A+     R L  +N  PL   +    +     +  K G   T ++F+ +L   +D   L++ F   F +  S KI  D +G SK  GFV FE++   + A+  L G
Sbjct:    3 SLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERCLRKVNGKPLPGATPPKRFKLSRSNYGKQGESSTFSLFVSDLTPDVDDGMLYEFFHYHFSSCCSGKIVLDANGHSKCCGFVSFESEREQKRALVDLQG 157          
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: NUCL_MOUSE (Nucleolin OS=Mus musculus GN=Ncl PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.723e-11
Identity = 51/208 (24.52%), Postives = 97/208 (46.63%), Query Frame = 1
Query:  229 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS----HRDPSIRKSGTGN-----IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLAESTTDEDLKKFF 825
            +L   +L FN+T+ +L ++F    ++  V         +S G  Y+ + + ADA + L+      ++ +S+ + Y+     R     K+ T +     + + NL  S   + L + F     I   K+  +  G+ KG+ F++F + E A+ A++  N M I       G  +R + + + +       +FVK L+E TT+E LK+ F
Sbjct:  396 TLLAKNLSFNITEDELKEVFEDAMEIRLVS-----QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKTSTWSGESKTLVLSNLSYSATKETLEEVFEKATFI---KVPQNPHGKPKGYAFIEFASFEDAKEALNSCNKMEIE------GRTIRLELQGSNSRSQPSKTLFVKGLSEDTTEETLKESF 589          
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: CELF5_XENTR (CUG-BP- and ETR-3-like factor 5 OS=Xenopus tropicalis GN=brunol5 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.723e-11
Identity = 49/179 (27.37%), Postives = 75/179 (41.90%), Query Frame = 1
Query:  145 QIQVQHQAQMSGPNGVAAGASGNQFLTT-SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNG 678
            Q Q      MSGP   A  +   + L    L+VG +  N+ +  L  LF Q G++  + V +D  T    G  ++ Y     A +A   L+         R +      S  + G   +F+  L K    + +   F +FG+I  C +     G SKG  FV+F +   AQ AI  L+G
Sbjct:   19 QQQQPRACPMSGPEPPAQQSDSMKDLDAIKLFVGQIPRNLEEKDLKPLFEQFGKIYELTVLKDRYTGMHKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESRGGDRKLFVGMLSKQQSEEEVTSMFQAFGSIEECSVLRGPDGSSKGCAFVKFSSHAEAQAAIQALHG 197          
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: RSD1_SCHPO (RNA-binding protein rsd1 OS=Schizosaccharomyces pombe GN=rsd1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.781e-11
Identity = 46/163 (28.22%), Postives = 78/163 (47.85%), Query Frame = 1
Query:  229 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPS--------IRKSGTGNIFIKNLDKSIDHKALHDT-----FSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNG 678
            +++V  L   +T  +LYD F Q G V   ++ RD  + RS G  YV + +  D+ +A   L+   L    + +  +  + +        + ++ +  I    L  S  H  L D      F  FG+I    +  D   +SKGFG++Q+ N  SA+NA++K+NG
Sbjct:  241 TVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHE-DSVQAAIALSGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFHRLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNG 402          
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: ROA1_PANTR (Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes GN=HNRNPA1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.781e-11
Identity = 55/176 (31.25%), Postives = 80/176 (45.45%), Query Frame = 1
Query:  232 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKS-------GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQN-AIDKLNGMLINDKQVFVGHFLRKQE 732
            L++G L F  TD  L   F Q G +    V RD +T+RS G+G+V YA   +   A   +N  P +    R++   R  S   S           IF+  + +  +   L D F  +G I   +I TD GSG+ +GF FV F++ +S     I K +   +N     V   L KQE
Sbjct:   16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA---MNARP-HKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYH--TVNGHNCEVRKALSKQE 185          
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: ROA1_MOUSE (Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus GN=Hnrnpa1 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 8.781e-11
Identity = 55/176 (31.25%), Postives = 80/176 (45.45%), Query Frame = 1
Query:  232 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKS-------GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQN-AIDKLNGMLINDKQVFVGHFLRKQE 732
            L++G L F  TD  L   F Q G +    V RD +T+RS G+G+V YA   +   A   +N  P +    R++   R  S   S           IF+  + +  +   L D F  +G I   +I TD GSG+ +GF FV F++ +S     I K +   +N     V   L KQE
Sbjct:   16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA---MNARP-HKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYH--TVNGHNCEVRKALSKQE 185          
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: ROA1_HUMAN (Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens GN=HNRNPA1 PE=1 SV=5)

HSP 1 Score: 67.781 bits (164), Expect = 8.781e-11
Identity = 55/176 (31.25%), Postives = 80/176 (45.45%), Query Frame = 1
Query:  232 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKS-------GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQN-AIDKLNGMLINDKQVFVGHFLRKQE 732
            L++G L F  TD  L   F Q G +    V RD +T+RS G+G+V YA   +   A   +N  P +    R++   R  S   S           IF+  + +  +   L D F  +G I   +I TD GSG+ +GF FV F++ +S     I K +   +N     V   L KQE
Sbjct:   16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA---MNARP-HKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYH--TVNGHNCEVRKALSKQE 185          
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: ROA1_BOVIN (Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus GN=HNRNPA1 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 8.781e-11
Identity = 55/176 (31.25%), Postives = 80/176 (45.45%), Query Frame = 1
Query:  232 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKS-------GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQN-AIDKLNGMLINDKQVFVGHFLRKQE 732
            L++G L F  TD  L   F Q G +    V RD +T+RS G+G+V YA   +   A   +N  P +    R++   R  S   S           IF+  + +  +   L D F  +G I   +I TD GSG+ +GF FV F++ +S     I K +   +N     V   L KQE
Sbjct:   16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA---MNARP-HKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYH--TVNGHNCEVRKALSKQE 185          
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: RA1L3_HUMAN (Putative heterogeneous nuclear ribonucleoprotein A1-like protein 3 OS=Homo sapiens GN=HNRPA1L3 PE=5 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.781e-11
Identity = 55/176 (31.25%), Postives = 80/176 (45.45%), Query Frame = 1
Query:  232 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKS-------GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQN-AIDKLNGMLINDKQVFVGHFLRKQE 732
            L++G L F  TD  L   F Q G +    V RD +T+RS G+G+V YA   +   A   +N  P +    R++   R  S   S           IF+  + +  +   L D F  +G I   +I TD GSG+ +GF FV F++ +S     I K +   +N     V   L KQE
Sbjct:   16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA---MNARP-HKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYH--TVNGHNCEVRKALSKQE 185          
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 8.781e-11
Identity = 52/203 (25.62%), Postives = 102/203 (50.25%), Query Frame = 1
Query:  172 MSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQV-LSVRVC----------RDLSTRRSLGYGYVNYANPADAARAL--DVLNFTPLNNKSIRI-----MYSHRDPSIRKSGTGN---IFIKNLDKSIDHKALHDTF-SSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVG 711
            + G + V+ G +GNQ     LY+GDLD     + +  +++ +G+  ++VR+             +  + + GY +V++ +   AA AL  + +      NK +++      YS+ + S+    +GN   IF+ +L  ++    L + F + + +    KI  D  +G SKG+GFV+F N +  Q A+ ++ G+ +N + + VG
Sbjct:   41 LQGASNVSLGTTGNQ-----LYMGDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGPKNNQGYCFVDFPSSTHAANALLKNGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRAIKVG 238          
The following BLAST results are available for this feature:
BLAST of CB290658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
TSAP1_DANRE6.723e-1129.68tRNA selenocysteine 1-associated protein 1 OS=Dani... [more]
NUCL_MOUSE6.723e-1124.52Nucleolin OS=Mus musculus GN=Ncl PE=1 SV=2[more]
CELF5_XENTR6.723e-1127.37CUG-BP- and ETR-3-like factor 5 OS=Xenopus tropica... [more]
RSD1_SCHPO8.781e-1128.22RNA-binding protein rsd1 OS=Schizosaccharomyces po... [more]
ROA1_PANTR8.781e-1131.25Heterogeneous nuclear ribonucleoprotein A1 OS=Pan ... [more]
ROA1_MOUSE8.781e-1131.25Heterogeneous nuclear ribonucleoprotein A1 OS=Mus ... [more]
ROA1_HUMAN8.781e-1131.25Heterogeneous nuclear ribonucleoprotein A1 OS=Homo... [more]
ROA1_BOVIN8.781e-1131.25Heterogeneous nuclear ribonucleoprotein A1 OS=Bos ... [more]
RA1L3_HUMAN8.781e-1131.25Putative heterogeneous nuclear ribonucleoprotein A... [more]
NAM8_YEAST8.781e-1125.62Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cg10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cg10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290658 ID=CB290658; Name=CB290658; organism=Citrus sinensis; type=EST; length=845bp
GGTTTTTTCCCCTAGAATTATAGTCATAGAATCAGATTATTTATCCTGTT
ATCTCTCTAGATTTTTATTTGAGAACTAGCAAGAGAAGAGGGAAATAAAA
AAGCCAAAAAAAAAAAGAAGGATCTAGAAGTGGTAGTGATGGCACAGATT
CAGGTGCAACATCAAGCGCAAATGTCGGGGCCAAACGGAGTGGCGGCGGG
TGCGTCAGGGAACCAGTTCCTAACGACGTCTCTTTATGTTGGCGATCTCG
ATTTCAACGTGACCGATTCGCAGCTTTATGATCTGTTCAGCCAGGTCGGT
CAAGTTCTGTCGGTTAGGGTTTGTCGGGACCTGAGCACCAGGCGCTCACT
CGGCTATGGTTACGTTAACTACGCCAACCCTGCAGATGCGGCAAGGGCAC
TGGATGTTCTTAACTTCACTCCACTTAATAATAAGTCCATTAGAATCATG
TATTCCCATCGGGATCCTAGTATTCGGAAAAGCGGTACTGGGAACATATT
TATCAAGAATTTGGACAAGTCTATTGATCACAAAGCATTACACGATACAT
TTTCTTCATTCGGAAACATTCTTTCTTGTAAGATAGCTACTGATGGTTCT
GGCCAGTCCAAAGGTTTCGGTTTTGTGCAATTTGAGAACAAAGAATCTGC
TCAAAATGCTATTGATAAGTTAAATGGCATGCTTATTAATGATAAACAAG
TGTTTGTTGGGCACTTTCTTCGTAAGCAGGAAAGAGAAACTGTAGCAATT
AAAACAAAATTCAATAACGTATTTGTCAAAAACCTTGCTGAGTCCACTAC
AGATGAAGATTTGAAGAAATTTTTTGGTGAGTATGGAACAATTAC
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