CB290658
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: TSAP1_DANRE (tRNA selenocysteine 1-associated protein 1 OS=Danio rerio GN=trnau1ap PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 6.723e-11 Identity = 46/155 (29.68%), Postives = 80/155 (51.61%), Query Frame = 1 Query: 229 SLYVGDLDFNVTDSQLYDLFSQVGQ-VLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSG---TGNIFIKNLDKSIDHKALHDTFS-SFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNG 678 SL++G+L+ + + + F+Q+G+ V+ +R+ RD T ++ GYG+V A+ R L +N PL + + + K G T ++F+ +L +D L++ F F + S KI D +G SK GFV FE++ + A+ L G Sbjct: 3 SLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERCLRKVNGKPLPGATPPKRFKLSRSNYGKQGESSTFSLFVSDLTPDVDDGMLYEFFHYHFSSCCSGKIVLDANGHSKCCGFVSFESEREQKRALVDLQG 157
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: NUCL_MOUSE (Nucleolin OS=Mus musculus GN=Ncl PE=1 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 6.723e-11 Identity = 51/208 (24.52%), Postives = 97/208 (46.63%), Query Frame = 1 Query: 229 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS----HRDPSIRKSGTGN-----IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLAESTTDEDLKKFF 825 +L +L FN+T+ +L ++F ++ V +S G Y+ + + ADA + L+ ++ +S+ + Y+ R K+ T + + + NL S + L + F I K+ + G+ KG+ F++F + E A+ A++ N M I G +R + + + + +FVK L+E TT+E LK+ F Sbjct: 396 TLLAKNLSFNITEDELKEVFEDAMEIRLVS-----QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKTSTWSGESKTLVLSNLSYSATKETLEEVFEKATFI---KVPQNPHGKPKGYAFIEFASFEDAKEALNSCNKMEIE------GRTIRLELQGSNSRSQPSKTLFVKGLSEDTTEETLKESF 589
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: CELF5_XENTR (CUG-BP- and ETR-3-like factor 5 OS=Xenopus tropicalis GN=brunol5 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 6.723e-11 Identity = 49/179 (27.37%), Postives = 75/179 (41.90%), Query Frame = 1 Query: 145 QIQVQHQAQMSGPNGVAAGASGNQFLTT-SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNG 678 Q Q MSGP A + + L L+VG + N+ + L LF Q G++ + V +D T G ++ Y A +A L+ R + S + G +F+ L K + + F +FG+I C + G SKG FV+F + AQ AI L+G Sbjct: 19 QQQQPRACPMSGPEPPAQQSDSMKDLDAIKLFVGQIPRNLEEKDLKPLFEQFGKIYELTVLKDRYTGMHKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESRGGDRKLFVGMLSKQQSEEEVTSMFQAFGSIEECSVLRGPDGSSKGCAFVKFSSHAEAQAAIQALHG 197
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: RSD1_SCHPO (RNA-binding protein rsd1 OS=Schizosaccharomyces pombe GN=rsd1 PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 8.781e-11 Identity = 46/163 (28.22%), Postives = 78/163 (47.85%), Query Frame = 1 Query: 229 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPS--------IRKSGTGNIFIKNLDKSIDHKALHDT-----FSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNG 678 +++V L +T +LYD F Q G V ++ RD + RS G YV + + D+ +A L+ L + + + + + + ++ + I L S H L D F FG+I + D +SKGFG++Q+ N SA+NA++K+NG Sbjct: 241 TVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHE-DSVQAAIALSGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFHRLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNG 402
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: ROA1_PANTR (Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes GN=HNRNPA1 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 8.781e-11 Identity = 55/176 (31.25%), Postives = 80/176 (45.45%), Query Frame = 1 Query: 232 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKS-------GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQN-AIDKLNGMLINDKQVFVGHFLRKQE 732 L++G L F TD L F Q G + V RD +T+RS G+G+V YA + A +N P + R++ R S S IF+ + + + L D F +G I +I TD GSG+ +GF FV F++ +S I K + +N V L KQE Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA---MNARP-HKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYH--TVNGHNCEVRKALSKQE 185
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: ROA1_MOUSE (Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus GN=Hnrnpa1 PE=1 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 8.781e-11 Identity = 55/176 (31.25%), Postives = 80/176 (45.45%), Query Frame = 1 Query: 232 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKS-------GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQN-AIDKLNGMLINDKQVFVGHFLRKQE 732 L++G L F TD L F Q G + V RD +T+RS G+G+V YA + A +N P + R++ R S S IF+ + + + L D F +G I +I TD GSG+ +GF FV F++ +S I K + +N V L KQE Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA---MNARP-HKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYH--TVNGHNCEVRKALSKQE 185
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: ROA1_HUMAN (Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens GN=HNRNPA1 PE=1 SV=5) HSP 1 Score: 67.781 bits (164), Expect = 8.781e-11 Identity = 55/176 (31.25%), Postives = 80/176 (45.45%), Query Frame = 1 Query: 232 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKS-------GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQN-AIDKLNGMLINDKQVFVGHFLRKQE 732 L++G L F TD L F Q G + V RD +T+RS G+G+V YA + A +N P + R++ R S S IF+ + + + L D F +G I +I TD GSG+ +GF FV F++ +S I K + +N V L KQE Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA---MNARP-HKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYH--TVNGHNCEVRKALSKQE 185
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: ROA1_BOVIN (Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus GN=HNRNPA1 PE=1 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 8.781e-11 Identity = 55/176 (31.25%), Postives = 80/176 (45.45%), Query Frame = 1 Query: 232 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKS-------GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQN-AIDKLNGMLINDKQVFVGHFLRKQE 732 L++G L F TD L F Q G + V RD +T+RS G+G+V YA + A +N P + R++ R S S IF+ + + + L D F +G I +I TD GSG+ +GF FV F++ +S I K + +N V L KQE Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA---MNARP-HKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYH--TVNGHNCEVRKALSKQE 185
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: RA1L3_HUMAN (Putative heterogeneous nuclear ribonucleoprotein A1-like protein 3 OS=Homo sapiens GN=HNRPA1L3 PE=5 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 8.781e-11 Identity = 55/176 (31.25%), Postives = 80/176 (45.45%), Query Frame = 1 Query: 232 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKS-------GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQN-AIDKLNGMLINDKQVFVGHFLRKQE 732 L++G L F TD L F Q G + V RD +T+RS G+G+V YA + A +N P + R++ R S S IF+ + + + L D F +G I +I TD GSG+ +GF FV F++ +S I K + +N V L KQE Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA---MNARP-HKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYH--TVNGHNCEVRKALSKQE 185
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 8.781e-11 Identity = 52/203 (25.62%), Postives = 102/203 (50.25%), Query Frame = 1 Query: 172 MSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQV-LSVRVC----------RDLSTRRSLGYGYVNYANPADAARAL--DVLNFTPLNNKSIRI-----MYSHRDPSIRKSGTGN---IFIKNLDKSIDHKALHDTF-SSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVG 711 + G + V+ G +GNQ LY+GDLD + + +++ +G+ ++VR+ + + + GY +V++ + AA AL + + NK +++ YS+ + S+ +GN IF+ +L ++ L + F + + + KI D +G SKG+GFV+F N + Q A+ ++ G+ +N + + VG Sbjct: 41 LQGASNVSLGTTGNQ-----LYMGDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGPKNNQGYCFVDFPSSTHAANALLKNGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRAIKVG 238 The following BLAST results are available for this feature:
BLAST of CB290658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 170
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Sequences
The
following sequences are available for this feature:
EST sequence >CB290658 ID=CB290658; Name=CB290658; organism=Citrus sinensis; type=EST; length=845bpback to top |