CB290658 | Citrus Genome Database

Overview


Name	CB290658
Unique Name	CB290658
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	845

Libraries


Library Name	Type
Washington Navel orange cold acclimated flavedo & albedo cDNA library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

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BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: PABP_LODEL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Lodderomyces elongisporus GN=PAB1 PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.477e-58
Identity = 110/228 (48.25%), Postives = 165/228 (72.37%), Query Frame = 1

Query:  166 AQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET--VAIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTI 843
            A  +   G ++G + N   + SLYVG+L+ +V ++ L+++FS +GQV S+RVCRD  +++SLGY YVNY    D  +A++ LN+TP+  +  RIM+S RDPS R+SG GNIFIKNL  +ID+KALHDTFS+FG ILS K+ATD  GQSK FGFV +E +E+AQ AI+ +NGML+ND++V+VG  + K++RE+    +K  + N++VKN+  + T+++ ++ F  +G I
Sbjct:   50 ADSAEEQGESSGIAEN---SASLYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYVNYHKLEDGEKAIEELNYTPVEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSVKVATDDLGQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFGKI 274

HSP 2 Score: 115.931 bits (289), Expect = 2.812e-25
Identity = 72/224 (32.14%), Postives = 122/224 (54.46%), Query Frame = 1

Query:  229 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI--MYSHRDPSIR----KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLAESTTDEDLKKFFGEYGTI 843
            ++++ +L   + +  L+D FS  G++LSV+V  D    +S  +G+V+Y     A  A++ +N   LN++ + +    S +D   +    K+   NI++KN+D +   K   + F+ FG I S  +  D  G+SKGFGFV FE  E+A  A+++LN   IN ++++VG   +K+ER T  +K ++              N+FVKNL E    E L++ F  +GTI
Sbjct:  156 NIFIKNLHPAIDNKALHDTFSAFGKILSVKVATD-DLGQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKRER-TEELKKQYEAVRLEKLSKYQGVNLFVKNLDEQIDSEKLEEEFKPFGTI 377

HSP 3 Score: 104.76 bits (260), Expect = 6.482e-22
Identity = 59/188 (31.38%), Postives = 101/188 (53.72%), Query Frame = 1

Query:  226 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRD----------------PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 741
            T++YV ++D   T+ +  +LF+  G++ S+ + +D +  +S G+G+VN+     AA+A++ LN   +N + I +  + +                   + K    N+F+KNLD+ ID + L + F  FG I S K+  D +G+SKGFGFV F   E A  AI ++N  ++N K ++V    RK  R +
Sbjct:  248 TNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKD-AEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKRERTEELKKQYEAVRLEKLSKYQGVNLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVALAQRKDVRRS 434

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BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: PABP_DEBHA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Debaryomyces hansenii GN=PAB1 PE=3 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 1.633e-57
Identity = 109/225 (48.44%), Postives = 160/225 (71.11%), Query Frame = 1

Query:  175 SGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET--VAIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTI 843
            SG    AA ++     + SLYVG+L+ +V ++ L+++FS +GQV S+RVCRD  T++SLGY YVN+    D  +A++ LN++ +  +  RIM+S RDPS+R++G GNIFIKNL  +ID+KALHDTF++FG ILSCK+ATD  G SK FGFV +E  E+A+ AI+ +NGML+ND++V+VG  + K++RE+    +K  F NV+ KN+    ++E+ KK F  YG I
Sbjct:   34 SGETEEAADSAQVSDTSASLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDLNYSLIEGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFTAFGKILSCKVATDDMGISKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHISKKDRESKFEEMKANFTNVYAKNIDLDFSEEEFKKLFEAYGKI 258

HSP 2 Score: 105.145 bits (261), Expect = 4.963e-22
Identity = 67/223 (30.04%), Postives = 116/223 (52.02%), Query Frame = 1

Query:  229 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI--MYSHRDPSIR----KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN------------NVFVKNLAESTTDEDLKKFFGEYGTI 843
            ++++ +L   + +  L+D F+  G++LS +V  D     S  +G+V+Y     A  A++ +N   LN++ + +    S +D   +    K+   N++ KN+D     +     F ++G I S  +  D  G+SKGFGFV FEN ESA  A+D+LN   IN ++++VG   +K+ER     K   N            N+F+KNL ++   E L++ F  +G+I
Sbjct:  140 NIFIKNLHPAIDNKALHDTFTAFGKILSCKVATD-DMGISKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHISKKDRESKFEEMKANFTNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGSI 361

HSP 3 Score: 100.523 bits (249), Expect = 1.222e-20
Identity = 60/188 (31.91%), Postives = 100/188 (53.19%), Query Frame = 1

Query:  226 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI---------------MYSH-RDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 741
            T++Y  ++D + ++ +   LF   G++ S+ + +D    +S G+G+VN+ N   A +A+D LN   +N + I +                Y + R   + K    N+FIKNLD +ID + L + F  FG+I S ++  D +G+SKGFGFV F + E A  AI ++N  +I  K ++V    RK  R +
Sbjct:  232 TNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKD-HEGKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGSITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGKPLYVALAQRKDVRRS 418

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BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: PABP_KLULA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Kluyveromyces lactis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.638e-57
Identity = 107/225 (47.56%), Postives = 155/225 (68.89%), Query Frame = 1

Query:  175 SGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTI 843
            S     A+  S  +    SLYVG+LD N+T++ LYD+FS +G + S+RVCRD  T+ SLGY YVNY +     +A+  LN+  +N +  RIM+S RDP+IRK G+GNIFIKNL  +ID+KALH+TFS+FG +LSCK+A D +G S+GFGFV F+ +  A++AI+ +NGML+N  +V+V   + K++R  +    K  F N++VKN+   TTDE+ ++ F +YG I
Sbjct:   33 SASESEASSVSKVENNNASLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQELNYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVLSCKVALDENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISKLEEAKANFTNIYVKNIDVETTDEEFEQLFSQYGEI 257

HSP 2 Score: 110.923 bits (276), Expect = 9.045e-24
Identity = 69/223 (30.94%), Postives = 115/223 (51.57%), Query Frame = 1

Query:  229 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI-MYSHRDPSIRK-----SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK----------TKFN--NVFVKNLAESTTDEDLKKFFGEYGTI 843
            ++++ +L   + +  L++ FS  G+VLS +V  D     S G+G+V++   +DA  A++ +N   +N   + + M+  +   I K     +   NI++KN+D     +     FS +G I+S  +  D  G+ KGFGFV F +  +A  A+++LNG     + ++VG   +K ER     K           KF   N+F+KNL +S  DE LK+ F  YGTI
Sbjct:  139 NIFIKNLHPAIDNKALHETFSTFGEVLSCKVALD-ENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISKLEEAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEKLKEEFAPYGTI 360

HSP 3 Score: 99.3673 bits (246), Expect = 2.723e-20
Identity = 58/188 (30.85%), Postives = 98/188 (52.13%), Query Frame = 1

Query:  226 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----------------MYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 741
            T++YV ++D   TD +   LFSQ G+++S  + +D   +   G+G+VN+ +   AA+A++ LN     ++++ +                   +R   + K    N+FIKNLD SID + L + F+ +G I S ++  D  G SKGFGFV F + E A  A+ + N  ++  K ++V    RK  R +
Sbjct:  231 TNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPK-GFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQEGNSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAIAQRKDVRRS 417

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BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: PAP1M_HUMAN (Polyadenylate-binding protein 1-like 2 OS=Homo sapiens GN=PABPC1L2A PE=1 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 9.908e-55
Identity = 107/195 (54.87%), Postives = 140/195 (71.79%), Query Frame = 1

Query:  229 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLAESTTDE 807
            SLYVGDL   VT++ LY+ FS  G +LS+R+CRD  TRRSLGY YVNY  P DA RAL+ LNF  +  + +RIM+S RDPS+RKSG GN+FIKNL K+ID+KAL++ FS+FGNILSCK+A D  G  KG+GFV F+ +ESA+ AID +NGM +N +++FVG F   +ERE    A   +  +  VK+  E T +E
Sbjct:    3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWARQSTSADVKDFEEDTDEE 196

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BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: PAB4L_HUMAN (Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.095e-53
Identity = 106/210 (50.48%), Postives = 146/210 (69.52%), Query Frame = 1

Query:  214 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLAESTTDEDLKKFFGEYG 837
            ++   SLYVGDL  +VT+  L+  FS VG VLS+R+CRD  TRRSLGY YVN+   ADA +ALD +NF  +  KSIR+M+S RD  +R+SG GN+FIKNLDKSID+K L++ FS+FG ILS K+ +D  G SKG+ FV F+N+ +A  AI+++NG L+   +VFVG F  +++RE    +  ++F NV++KN      DE LK  F +YG
Sbjct:    6 KYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYG 214

HSP 2 Score: 123.25 bits (308), Expect = 1.761e-27
Identity = 72/224 (32.14%), Postives = 125/224 (55.80%), Query Frame = 1

Query:  229 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIRKSGTG--NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLAESTTDEDLKKFFGEYGTI 843
            ++++ +LD ++ +  LY+ FS  G++LS +V  D   + S GY +V++ N + A RA++ +N   L    + +        R+  +R   +   N++IKN    +D + L D FS +G  LS K+ TD SG+SKGFGFV F++ E+A+ A++++NG  IN + +FVG   +K ER+   +K  F               +++KNL ++  DE L+  F  +G+I
Sbjct:   99 NVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSD--DQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQ-AELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSI 319

HSP 3 Score: 89.3521 bits (220), Expect = 2.818e-17
Identity = 54/177 (30.51%), Postives = 98/177 (55.37%), Query Frame = 1

Query:  226 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPS----------------IRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 708
            T++Y+ +   ++ D +L D+FS+ G+ LSV+V  D S+ +S G+G+V++ +   A +A++ +N   +N + I +  + +                   IR      ++IKNLD +ID + L + FSSFG+I   K+  +  GQSKGFG + F + E A  A+ ++NG ++  K + +
Sbjct:  190 TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQE-EGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSI 364

[Close]

BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: PABP5_PONPY (Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.025e-51
Identity = 106/212 (50.00%), Postives = 143/212 (67.45%), Query Frame = 1

Query:  214 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLAESTTDEDLKKFFGEYG 837
            ++L  +LYVGDLD +VT+  LY  F   G +   R+CRD  TR  LGYGYVN+  PADA  AL+ +NF  +N K  R+M+S  D  +RKSG GNIFIKNLDKSID++AL   FS+FGNILSCK+  D +G SKG+ +V F++  +A  AI  +NG+ +N++QV+VG F   +ER    ++T+    F NVFVKN+ +   DE LK+ F EYG
Sbjct:   14 KYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYG 223

HSP 2 Score: 117.472 bits (293), Expect = 9.663e-26
Identity = 75/224 (33.48%), Postives = 123/224 (54.91%), Query Frame = 1

Query:  229 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIR---KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--------ETVAIKTKFN----NVFVKNLAESTTDEDLKKFFGEYGTI 843
            ++++ +LD ++ +  L+ LFS  G +LS +V  D     S GY YV++ + A A RA+  +N   LNN+ + +        R   +R   ++   N+F+KN+   ID + L + F  +G   S K+  D SG+SKGFGFV++E  E+AQ A+  L+G  I+ K ++VG   +K ER        E + +K K       +++KNL E+  DE LK+ F  +G+I
Sbjct:  107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSI 328

HSP 3 Score: 83.1889 bits (204), Expect = 2.020e-15
Identity = 56/183 (30.60%), Postives = 94/183 (51.37%), Query Frame = 1

Query:  226 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNK----------------------SIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 708
            T+++V ++  ++ D +L +LF + G   SV+V RD S + S G+G+V Y     A +A+  L+   ++ K                       +R+    R P +       I+IKNLD++I+ + L + FSSFG+I   K+  +  GQ KGFG V F + E A  A+D++NG ++  K + V
Sbjct:  199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGK-SKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP------IYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 373

[Close]

BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: PABP5_PANTR (Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.025e-51
Identity = 106/212 (50.00%), Postives = 143/212 (67.45%), Query Frame = 1

Query:  214 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLAESTTDEDLKKFFGEYG 837
            ++L  +LYVGDLD +VT+  LY  F   G +   R+CRD  TR  LGYGYVN+  PADA  AL+ +NF  +N K  R+M+S  D  +RKSG GNIFIKNLDKSID++AL   FS+FGNILSCK+  D +G SKG+ +V F++  +A  AI  +NG+ +N++QV+VG F   +ER    ++T+    F NVFVKN+ +   DE LK+ F EYG
Sbjct:   14 KYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYG 223

HSP 2 Score: 117.472 bits (293), Expect = 9.663e-26
Identity = 75/224 (33.48%), Postives = 123/224 (54.91%), Query Frame = 1

Query:  229 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIR---KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--------ETVAIKTKFN----NVFVKNLAESTTDEDLKKFFGEYGTI 843
            ++++ +LD ++ +  L+ LFS  G +LS +V  D     S GY YV++ + A A RA+  +N   LNN+ + +        R   +R   ++   N+F+KN+   ID + L + F  +G   S K+  D SG+SKGFGFV++E  E+AQ A+  L+G  I+ K ++VG   +K ER        E + +K K       +++KNL E+  DE LK+ F  +G+I
Sbjct:  107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSI 328

HSP 3 Score: 83.1889 bits (204), Expect = 2.020e-15
Identity = 56/183 (30.60%), Postives = 94/183 (51.37%), Query Frame = 1

Query:  226 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNK----------------------SIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 708
            T+++V ++  ++ D +L +LF + G   SV+V RD S + S G+G+V Y     A +A+  L+   ++ K                       +R+    R P +       I+IKNLD++I+ + L + FSSFG+I   K+  +  GQ KGFG V F + E A  A+D++NG ++  K + V
Sbjct:  199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGK-SKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP------IYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 373

[Close]

BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: PABP5_MACMU (Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.025e-51
Identity = 106/212 (50.00%), Postives = 143/212 (67.45%), Query Frame = 1

Query:  214 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLAESTTDEDLKKFFGEYG 837
            ++L  +LYVGDLD +VT+  LY  F   G +   R+CRD  TR  LGYGYVN+  PADA  AL+ +NF  +N K  R+M+S  D  +RKSG GNIFIKNLDKSID++AL   FS+FGNILSCK+  D +G SKG+ +V F++  +A  AI  +NG+ +N++QV+VG F   +ER    ++T+    F NVFVKN+ +   DE LK+ F EYG
Sbjct:   14 KYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYG 223

HSP 2 Score: 117.472 bits (293), Expect = 9.663e-26
Identity = 75/224 (33.48%), Postives = 123/224 (54.91%), Query Frame = 1

Query:  229 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIR---KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--------ETVAIKTKFN----NVFVKNLAESTTDEDLKKFFGEYGTI 843
            ++++ +LD ++ +  L+ LFS  G +LS +V  D     S GY YV++ + A A RA+  +N   LNN+ + +        R   +R   ++   N+F+KN+   ID + L + F  +G   S K+  D SG+SKGFGFV++E  E+AQ A+  L+G  I+ K ++VG   +K ER        E + +K K       +++KNL E+  DE LK+ F  +G+I
Sbjct:  107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSI 328

HSP 3 Score: 82.8037 bits (203), Expect = 2.638e-15
Identity = 56/183 (30.60%), Postives = 94/183 (51.37%), Query Frame = 1

Query:  226 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNK----------------------SIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 708
            T+++V ++  ++ D +L +LF + G   SV+V RD S + S G+G+V Y     A +A+  L+   ++ K                       +R+    R P +       I+IKNLD++I+ + L + FSSFG+I   K+  +  GQ KGFG V F + E A  A+D++NG ++  K + V
Sbjct:  199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGK-SKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP------IYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHV 373

[Close]

BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: PABP5_HYLLA (Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.025e-51
Identity = 106/212 (50.00%), Postives = 143/212 (67.45%), Query Frame = 1

Query:  214 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLAESTTDEDLKKFFGEYG 837
            ++L  +LYVGDLD +VT+  LY  F   G +   R+CRD  TR  LGYGYVN+  PADA  AL+ +NF  +N K  R+M+S  D  +RKSG GNIFIKNLDKSID++AL   FS+FGNILSCK+  D +G SKG+ +V F++  +A  AI  +NG+ +N++QV+VG F   +ER    ++T+    F NVFVKN+ +   DE LK+ F EYG
Sbjct:   14 KYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYG 223

HSP 2 Score: 117.472 bits (293), Expect = 9.663e-26
Identity = 75/224 (33.48%), Postives = 123/224 (54.91%), Query Frame = 1

Query:  229 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIR---KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--------ETVAIKTKFN----NVFVKNLAESTTDEDLKKFFGEYGTI 843
            ++++ +LD ++ +  L+ LFS  G +LS +V  D     S GY YV++ + A A RA+  +N   LNN+ + +        R   +R   ++   N+F+KN+   ID + L + F  +G   S K+  D SG+SKGFGFV++E  E+AQ A+  L+G  I+ K ++VG   +K ER        E + +K K       +++KNL E+  DE LK+ F  +G+I
Sbjct:  107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSI 328

HSP 3 Score: 83.1889 bits (204), Expect = 2.020e-15
Identity = 56/183 (30.60%), Postives = 94/183 (51.37%), Query Frame = 1

Query:  226 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNK----------------------SIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 708
            T+++V ++  ++ D +L +LF + G   SV+V RD S + S G+G+V Y     A +A+  L+   ++ K                       +R+    R P +       I+IKNLD++I+ + L + FSSFG+I   K+  +  GQ KGFG V F + E A  A+D++NG ++  K + V
Sbjct:  199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGK-SKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP------IYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 373

[Close]

BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: PABP5_HUMAN (Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.025e-51
Identity = 106/212 (50.00%), Postives = 143/212 (67.45%), Query Frame = 1

Query:  214 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLAESTTDEDLKKFFGEYG 837
            ++L  +LYVGDLD +VT+  LY  F   G +   R+CRD  TR  LGYGYVN+  PADA  AL+ +NF  +N K  R+M+S  D  +RKSG GNIFIKNLDKSID++AL   FS+FGNILSCK+  D +G SKG+ +V F++  +A  AI  +NG+ +N++QV+VG F   +ER    ++T+    F NVFVKN+ +   DE LK+ F EYG
Sbjct:   14 KYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYG 223

HSP 2 Score: 117.472 bits (293), Expect = 9.663e-26
Identity = 75/224 (33.48%), Postives = 123/224 (54.91%), Query Frame = 1

Query:  229 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIR---KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--------ETVAIKTKFN----NVFVKNLAESTTDEDLKKFFGEYGTI 843
            ++++ +LD ++ +  L+ LFS  G +LS +V  D     S GY YV++ + A A RA+  +N   LNN+ + +        R   +R   ++   N+F+KN+   ID + L + F  +G   S K+  D SG+SKGFGFV++E  E+AQ A+  L+G  I+ K ++VG   +K ER        E + +K K       +++KNL E+  DE LK+ F  +G+I
Sbjct:  107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSI 328

HSP 3 Score: 83.1889 bits (204), Expect = 2.020e-15
Identity = 56/183 (30.60%), Postives = 94/183 (51.37%), Query Frame = 1

Query:  226 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNK----------------------SIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 708
            T+++V ++  ++ D +L +LF + G   SV+V RD S + S G+G+V Y     A +A+  L+   ++ K                       +R+    R P +       I+IKNLD++I+ + L + FSSFG+I   K+  +  GQ KGFG V F + E A  A+D++NG ++  K + V
Sbjct:  199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGK-SKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP------IYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 373

The following BLAST results are available for this feature:

BLAST of CB290658 vs. ExPASy Swiss-Prot

BLAST of CB290658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170


Match Name	E-value	Identity	Description
PABP_LODEL	1.477e-58	48.25	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP_DEBHA	1.633e-57	48.44	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP_KLULA	3.638e-57	47.56	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PAP1M_HUMAN	9.908e-55	54.87	Polyadenylate-binding protein 1-like 2 OS=Homo sap...	[more]
PAB4L_HUMAN	1.095e-53	50.48	Polyadenylate-binding protein 4-like OS=Homo sapie...	[more]
PABP5_PONPY	1.025e-51	50.00	Polyadenylate-binding protein 5 OS=Pongo pygmaeus ...	[more]
PABP5_PANTR	1.025e-51	50.00	Polyadenylate-binding protein 5 OS=Pan troglodytes...	[more]
PABP5_MACMU	1.025e-51	50.00	Polyadenylate-binding protein 5 OS=Macaca mulatta ...	[more]
PABP5_HYLLA	1.025e-51	50.00	Polyadenylate-binding protein 5 OS=Hylobates lar G...	[more]
PABP5_HUMAN	1.025e-51	50.00	Polyadenylate-binding protein 5 OS=Homo sapiens GN...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS01_01cg10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cg10, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB290658 ID=CB290658; Name=CB290658; organism=Citrus sinensis; type=EST; length=845bp
GGTTTTTTCCCCTAGAATTATAGTCATAGAATCAGATTATTTATCCTGTT
ATCTCTCTAGATTTTTATTTGAGAACTAGCAAGAGAAGAGGGAAATAAAA
AAGCCAAAAAAAAAAAGAAGGATCTAGAAGTGGTAGTGATGGCACAGATT
CAGGTGCAACATCAAGCGCAAATGTCGGGGCCAAACGGAGTGGCGGCGGG
TGCGTCAGGGAACCAGTTCCTAACGACGTCTCTTTATGTTGGCGATCTCG
ATTTCAACGTGACCGATTCGCAGCTTTATGATCTGTTCAGCCAGGTCGGT
CAAGTTCTGTCGGTTAGGGTTTGTCGGGACCTGAGCACCAGGCGCTCACT
CGGCTATGGTTACGTTAACTACGCCAACCCTGCAGATGCGGCAAGGGCAC
TGGATGTTCTTAACTTCACTCCACTTAATAATAAGTCCATTAGAATCATG
TATTCCCATCGGGATCCTAGTATTCGGAAAAGCGGTACTGGGAACATATT
TATCAAGAATTTGGACAAGTCTATTGATCACAAAGCATTACACGATACAT
TTTCTTCATTCGGAAACATTCTTTCTTGTAAGATAGCTACTGATGGTTCT
GGCCAGTCCAAAGGTTTCGGTTTTGTGCAATTTGAGAACAAAGAATCTGC
TCAAAATGCTATTGATAAGTTAAATGGCATGCTTATTAATGATAAACAAG
TGTTTGTTGGGCACTTTCTTCGTAAGCAGGAAAGAGAAACTGTAGCAATT
AAAACAAAATTCAATAACGTATTTGTCAAAAACCTTGCTGAGTCCACTAC
AGATGAAGATTTGAAGAAATTTTTTGGTGAGTATGGAACAATTAC