CB290658

Overview
NameCB290658
Unique NameCB290658
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: ELAV2_XENTR (ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 2.015e-23
Identity = 58/160 (36.25%), Postives = 94/160 (58.75%), Query Frame = 1
Query:  202 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 678
            +S  +   T+L V  L  N+T  +L  LF  +G++ S ++ RD  T +SLGYG+VNY +P DA +A++ LN   L  K+I++ Y+   PS       N+++  L K++  K L   FS +G I++ +I  D  +G S+G GF++F+ +  A+ AI  LNG
Sbjct:   59 SSNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 216          

HSP 2 Score: 69.707 bits (169), Expect = 2.311e-11
Identity = 49/185 (26.49%), Postives = 87/185 (47.03%), Query Frame = 1
Query:  307 LSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNN-----KSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTI 843
            ++VR+C   S  RS  +    +     AA    + N    NN      +I    S  + S  +    N+ +  L +++  + L   F S G I SCK+  D  +GQS G+GFV + + + A+ AI+ LNG+ +  K + V +          +   +  N++V  L ++ T ++L++ F +YG I
Sbjct:    1 MAVRLCDVASLLRSGSWAAEPWTGQVIAAMETQLSNGPTCNNTANCPNTINNCSSPVESSNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY------ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRI 179          
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: ELAV3_XENLA (ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.632e-23
Identity = 59/170 (34.71%), Postives = 99/170 (58.24%), Query Frame = 1
Query:  172 MSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 678
            ++G NG A  +       T+L V  L  N+T  +   LF  +G++ S ++ RD  T +SLGYG+VNY +P DA +A++ LN   L  K+I++ Y+   PS       N+++ +L K+++ K +   FS +G I++ +I  D  +G S+G GF++F+ +  A+ AI  LNG
Sbjct:   22 LNGTNGEADDSK------TNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYAR--PSSASIRDANLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 183          
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: ELAV2_PONAB (ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.437e-23
Identity = 57/152 (37.50%), Postives = 91/152 (59.87%), Query Frame = 1
Query:  226 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 678
            T+L V  L  N+T  +L  LF  +G++ S ++ RD  T +SLGYG+VNY +P DA +A++ LN   L  K+I++ Y+   PS       N+++  L K++  K L   FS +G I++ +I  D  +G S+G GF++F+ +  A+ AI  LNG
Sbjct:   39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188          
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: ELAV2_MOUSE (ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.437e-23
Identity = 57/152 (37.50%), Postives = 91/152 (59.87%), Query Frame = 1
Query:  226 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 678
            T+L V  L  N+T  +L  LF  +G++ S ++ RD  T +SLGYG+VNY +P DA +A++ LN   L  K+I++ Y+   PS       N+++  L K++  K L   FS +G I++ +I  D  +G S+G GF++F+ +  A+ AI  LNG
Sbjct:   39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188          
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: ELAV2_HUMAN (ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 3.437e-23
Identity = 57/152 (37.50%), Postives = 91/152 (59.87%), Query Frame = 1
Query:  226 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 678
            T+L V  L  N+T  +L  LF  +G++ S ++ RD  T +SLGYG+VNY +P DA +A++ LN   L  K+I++ Y+   PS       N+++  L K++  K L   FS +G I++ +I  D  +G S+G GF++F+ +  A+ AI  LNG
Sbjct:   39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188          
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: SF3B4_RAT (Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.863e-23
Identity = 64/184 (34.78%), Postives = 103/184 (55.98%), Query Frame = 1
Query:  190 VAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSC-KIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 735
            +AAG    +    ++YVG LD  V++  L++LF Q G V++  + +D  T +  GYG+V + +  DA  A+ ++N   L  K IR+  +         G  NIFI NLD  ID K L+DTFS+FG IL   KI  D  +G SKG+ F+ F + +++  AI+ +NG  + ++ + V +  +K  +
Sbjct:    1 MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVG-ANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183          
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: SF3B4_MOUSE (Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.863e-23
Identity = 64/184 (34.78%), Postives = 103/184 (55.98%), Query Frame = 1
Query:  190 VAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSC-KIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 735
            +AAG    +    ++YVG LD  V++  L++LF Q G V++  + +D  T +  GYG+V + +  DA  A+ ++N   L  K IR+  +         G  NIFI NLD  ID K L+DTFS+FG IL   KI  D  +G SKG+ F+ F + +++  AI+ +NG  + ++ + V +  +K  +
Sbjct:    1 MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVG-ANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183          
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: SF3B4_HUMAN (Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.863e-23
Identity = 64/184 (34.78%), Postives = 103/184 (55.98%), Query Frame = 1
Query:  190 VAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSC-KIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 735
            +AAG    +    ++YVG LD  V++  L++LF Q G V++  + +D  T +  GYG+V + +  DA  A+ ++N   L  K IR+  +         G  NIFI NLD  ID K L+DTFS+FG IL   KI  D  +G SKG+ F+ F + +++  AI+ +NG  + ++ + V +  +K  +
Sbjct:    1 MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVG-ANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183          
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: SF3B4_CAEEL (Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 5.863e-23
Identity = 63/184 (34.24%), Postives = 102/184 (55.43%), Query Frame = 1
Query:  190 VAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSC-KIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 735
            ++AG    +    ++YVG LD  V++S L++L  Q G V+SV + +D  T    G+G+V +    DA  A+ +LN   L  K I++  +         G  NIF+ NLD  +D K L+DTFS+FG IL   KI  D  SG SKGF F+ F + E++  A++ +NG  + ++ + V +  ++  +
Sbjct:    1 MSAGPIVERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKASAHEKNMDVG-ANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSK 183          
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: ELAV4_RAT (ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.863e-23
Identity = 59/167 (35.33%), Postives = 97/167 (58.08%), Query Frame = 1
Query:  181 PNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 678
            P+ +  GA+ +    T+L V  L  N+T  +   LF  +G++ S ++ RD  T +SLGYG+VNY +P DA +A++ LN   L  K+I++ Y+   PS       N+++  L K++  K L   FS +G I++ +I  D  +G S+G GF++F+ +  A+ AI  LNG
Sbjct:   25 PSPMQTGAATDDS-KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188          
The following BLAST results are available for this feature:
BLAST of CB290658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
ELAV2_XENTR2.015e-2336.25ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl... [more]
ELAV3_XENLA2.632e-2334.71ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE... [more]
ELAV2_PONAB3.437e-2337.50ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2... [more]
ELAV2_MOUSE3.437e-2337.50ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2... [more]
ELAV2_HUMAN3.437e-2337.50ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1... [more]
SF3B4_RAT5.863e-2334.78Splicing factor 3B subunit 4 OS=Rattus norvegicus ... [more]
SF3B4_MOUSE5.863e-2334.78Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf... [more]
SF3B4_HUMAN5.863e-2334.78Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF... [more]
SF3B4_CAEEL5.863e-2334.24Splicing factor 3B subunit 4 OS=Caenorhabditis ele... [more]
ELAV4_RAT5.863e-2335.33ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cg10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cg10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290658 ID=CB290658; Name=CB290658; organism=Citrus sinensis; type=EST; length=845bp
GGTTTTTTCCCCTAGAATTATAGTCATAGAATCAGATTATTTATCCTGTT
ATCTCTCTAGATTTTTATTTGAGAACTAGCAAGAGAAGAGGGAAATAAAA
AAGCCAAAAAAAAAAAGAAGGATCTAGAAGTGGTAGTGATGGCACAGATT
CAGGTGCAACATCAAGCGCAAATGTCGGGGCCAAACGGAGTGGCGGCGGG
TGCGTCAGGGAACCAGTTCCTAACGACGTCTCTTTATGTTGGCGATCTCG
ATTTCAACGTGACCGATTCGCAGCTTTATGATCTGTTCAGCCAGGTCGGT
CAAGTTCTGTCGGTTAGGGTTTGTCGGGACCTGAGCACCAGGCGCTCACT
CGGCTATGGTTACGTTAACTACGCCAACCCTGCAGATGCGGCAAGGGCAC
TGGATGTTCTTAACTTCACTCCACTTAATAATAAGTCCATTAGAATCATG
TATTCCCATCGGGATCCTAGTATTCGGAAAAGCGGTACTGGGAACATATT
TATCAAGAATTTGGACAAGTCTATTGATCACAAAGCATTACACGATACAT
TTTCTTCATTCGGAAACATTCTTTCTTGTAAGATAGCTACTGATGGTTCT
GGCCAGTCCAAAGGTTTCGGTTTTGTGCAATTTGAGAACAAAGAATCTGC
TCAAAATGCTATTGATAAGTTAAATGGCATGCTTATTAATGATAAACAAG
TGTTTGTTGGGCACTTTCTTCGTAAGCAGGAAAGAGAAACTGTAGCAATT
AAAACAAAATTCAATAACGTATTTGTCAAAAACCTTGCTGAGTCCACTAC
AGATGAAGATTTGAAGAAATTTTTTGGTGAGTATGGAACAATTAC
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