CB290658
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: ELAV2_XENTR (ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2) HSP 1 Score: 109.768 bits (273), Expect = 2.015e-23 Identity = 58/160 (36.25%), Postives = 94/160 (58.75%), Query Frame = 1 Query: 202 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 678 +S + T+L V L N+T +L LF +G++ S ++ RD T +SLGYG+VNY +P DA +A++ LN L K+I++ Y+ PS N+++ L K++ K L FS +G I++ +I D +G S+G GF++F+ + A+ AI LNG Sbjct: 59 SSNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 216 HSP 2 Score: 69.707 bits (169), Expect = 2.311e-11 Identity = 49/185 (26.49%), Postives = 87/185 (47.03%), Query Frame = 1 Query: 307 LSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNN-----KSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTI 843 ++VR+C S RS + + AA + N NN +I S + S + N+ + L +++ + L F S G I SCK+ D +GQS G+GFV + + + A+ AI+ LNG+ + K + V + + + N++V L ++ T ++L++ F +YG I Sbjct: 1 MAVRLCDVASLLRSGSWAAEPWTGQVIAAMETQLSNGPTCNNTANCPNTINNCSSPVESSNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY------ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRI 179
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: ELAV3_XENLA (ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 2.632e-23 Identity = 59/170 (34.71%), Postives = 99/170 (58.24%), Query Frame = 1 Query: 172 MSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 678 ++G NG A + T+L V L N+T + LF +G++ S ++ RD T +SLGYG+VNY +P DA +A++ LN L K+I++ Y+ PS N+++ +L K+++ K + FS +G I++ +I D +G S+G GF++F+ + A+ AI LNG Sbjct: 22 LNGTNGEADDSK------TNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYAR--PSSASIRDANLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 183
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: ELAV2_PONAB (ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 3.437e-23 Identity = 57/152 (37.50%), Postives = 91/152 (59.87%), Query Frame = 1 Query: 226 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 678 T+L V L N+T +L LF +G++ S ++ RD T +SLGYG+VNY +P DA +A++ LN L K+I++ Y+ PS N+++ L K++ K L FS +G I++ +I D +G S+G GF++F+ + A+ AI LNG Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: ELAV2_MOUSE (ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 3.437e-23 Identity = 57/152 (37.50%), Postives = 91/152 (59.87%), Query Frame = 1 Query: 226 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 678 T+L V L N+T +L LF +G++ S ++ RD T +SLGYG+VNY +P DA +A++ LN L K+I++ Y+ PS N+++ L K++ K L FS +G I++ +I D +G S+G GF++F+ + A+ AI LNG Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: ELAV2_HUMAN (ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2) HSP 1 Score: 108.997 bits (271), Expect = 3.437e-23 Identity = 57/152 (37.50%), Postives = 91/152 (59.87%), Query Frame = 1 Query: 226 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 678 T+L V L N+T +L LF +G++ S ++ RD T +SLGYG+VNY +P DA +A++ LN L K+I++ Y+ PS N+++ L K++ K L FS +G I++ +I D +G S+G GF++F+ + A+ AI LNG Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: SF3B4_RAT (Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 5.863e-23 Identity = 64/184 (34.78%), Postives = 103/184 (55.98%), Query Frame = 1 Query: 190 VAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSC-KIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 735 +AAG + ++YVG LD V++ L++LF Q G V++ + +D T + GYG+V + + DA A+ ++N L K IR+ + G NIFI NLD ID K L+DTFS+FG IL KI D +G SKG+ F+ F + +++ AI+ +NG + ++ + V + +K + Sbjct: 1 MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVG-ANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: SF3B4_MOUSE (Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 5.863e-23 Identity = 64/184 (34.78%), Postives = 103/184 (55.98%), Query Frame = 1 Query: 190 VAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSC-KIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 735 +AAG + ++YVG LD V++ L++LF Q G V++ + +D T + GYG+V + + DA A+ ++N L K IR+ + G NIFI NLD ID K L+DTFS+FG IL KI D +G SKG+ F+ F + +++ AI+ +NG + ++ + V + +K + Sbjct: 1 MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVG-ANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: SF3B4_HUMAN (Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 5.863e-23 Identity = 64/184 (34.78%), Postives = 103/184 (55.98%), Query Frame = 1 Query: 190 VAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSC-KIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 735 +AAG + ++YVG LD V++ L++LF Q G V++ + +D T + GYG+V + + DA A+ ++N L K IR+ + G NIFI NLD ID K L+DTFS+FG IL KI D +G SKG+ F+ F + +++ AI+ +NG + ++ + V + +K + Sbjct: 1 MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVG-ANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: SF3B4_CAEEL (Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49 PE=1 SV=2) HSP 1 Score: 108.227 bits (269), Expect = 5.863e-23 Identity = 63/184 (34.24%), Postives = 102/184 (55.43%), Query Frame = 1 Query: 190 VAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSC-KIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 735 ++AG + ++YVG LD V++S L++L Q G V+SV + +D T G+G+V + DA A+ +LN L K I++ + G NIF+ NLD +D K L+DTFS+FG IL KI D SG SKGF F+ F + E++ A++ +NG + ++ + V + ++ + Sbjct: 1 MSAGPIVERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKASAHEKNMDVG-ANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSK 183
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: ELAV4_RAT (ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 5.863e-23 Identity = 59/167 (35.33%), Postives = 97/167 (58.08%), Query Frame = 1 Query: 181 PNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 678 P+ + GA+ + T+L V L N+T + LF +G++ S ++ RD T +SLGYG+VNY +P DA +A++ LN L K+I++ Y+ PS N+++ L K++ K L FS +G I++ +I D +G S+G GF++F+ + A+ AI LNG Sbjct: 25 PSPMQTGAATDDS-KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188 The following BLAST results are available for this feature:
BLAST of CB290658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 170
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Sequences
The
following sequences are available for this feature:
EST sequence >CB290658 ID=CB290658; Name=CB290658; organism=Citrus sinensis; type=EST; length=845bpback to top |