CB290658

Overview
NameCB290658
Unique NameCB290658
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: TIAR_HUMAN (Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.265e-17
Identity = 64/225 (28.44%), Postives = 110/225 (48.89%), Query Frame = 1
Query:  229 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN---IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK-------QERETVAIK---------TKFNNVFVKNLAESTTDEDLKKFFGEYGTI 843
            +LYVG+L  +VT+  +  LFSQ+G   S ++  + ++     Y +V +    DAA AL  +N   +  K +++ ++   PS +K  T N   +F+ +L   I  + +   F+ FG I   ++  D  +G+SKG+GFV F NK  A+NAI  + G  +  +Q+      RK       QE  T  ++          K   V+   +A   TD+ +++ F  +G I
Sbjct:   10 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQI 231          

HSP 2 Score: 76.2554 bits (186), Expect = 2.469e-13
Identity = 47/172 (27.33%), Postives = 80/172 (46.51%), Query Frame = 1
Query:  232 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN--------------------IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 687
            ++VGDL   +T   +   F+  G++   RV +D++T +S GYG+V++ N  DA  A+  +    L  + IR  ++ R P   KS   N                    ++   +   +  + +  TFS FG I+  ++  +     KG+ FV+F   ESA +AI  +NG  I
Sbjct:   99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 265          
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: RBMS1_BOVIN (RNA-binding motif, single-stranded-interacting protein 1 OS=Bos taurus GN=RBMS1 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.265e-17
Identity = 53/172 (30.81%), Postives = 88/172 (51.16%), Query Frame = 1
Query:  175 SGPNGVAAGASG-NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 687
            S  N  ++  SG +Q   T+LY+  L  N TD  L  L    G+++S +   D +T +  GYG+V++ +PA A +A+  L  + +  +  +     +DP+       N++I NL  S+D + L +    FG ++S +I  D SG S+G GF + E+ E  +  I   NG  I
Sbjct:   44 SNNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAK--QQEQDPT-------NLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFI 206          
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: PUB1_YEAST (Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 OS=Saccharomyces cerevisiae GN=PUB1 PE=1 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 1.265e-17
Identity = 53/185 (28.65%), Postives = 95/185 (51.35%), Query Frame = 1
Query:  151 QVQHQAQMSGPNGVAAGA--SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDK 696
            Q +     + P+ V A A   G +     LYVG+LD  +T+  L   F   G + ++++  D    +++ Y +V Y    DA  AL  LN   + N  ++I ++ +        T N+F+ +L+ ++D + L + F  F + LS  +  D  +G S+G+GFV F +++ AQNA+D + G  +N +
Sbjct:   48 QAEDNQGENDPSVVPANAITGGRETSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMID-KNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGR 231          
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: RBMS1_RAT (RNA-binding motif, single-stranded-interacting protein 1 OS=Rattus norvegicus GN=Rbms1 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.652e-17
Identity = 52/172 (30.23%), Postives = 88/172 (51.16%), Query Frame = 1
Query:  175 SGPNGVAAGASG-NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 687
            S  N  ++  SG +Q   T+LY+  L  N TD  L  L    G+++S +   D +T +  GYG+V++ +PA A +A+  L  + +  +  +     +DP+       N++I NL  S+D + L +    FG ++S ++  D SG S+G GF + E+ E  +  I   NG  I
Sbjct:   44 SNNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAK--QQEQDPT-------NLYISNLPLSMDEQELENMLKPFGQVISTRVLRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFI 206          
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: RBMS2_BOVIN (RNA-binding motif, single-stranded-interacting protein 2 OS=Bos taurus GN=RBMS2 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.158e-17
Identity = 52/185 (28.11%), Postives = 90/185 (48.65%), Query Frame = 1
Query:  133 VVMAQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 687
            V ++Q         S PN  +   + +Q   T+LY+  L  + TD  L  L    G+++S +   D +T +  GYG+V++ +P+ A +A+  L  + +  +  +     +DP+       N++I NL  S+D + L      FG ++S +I  D SG S+G GF + E+ E  +  I   NG  I
Sbjct:   25 VSLSQQMAPPSPSSSTPNSSSGSTAHDQLSKTNLYIRGLQPSTTDQDLVKLCQSYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAK--QQEQDPT-------NLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEKCEAIITHFNGKYI 200          
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: RBMS1_MOUSE (RNA-binding motif, single-stranded-interacting protein 1 OS=Mus musculus GN=Rbms1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.158e-17
Identity = 52/172 (30.23%), Postives = 87/172 (50.58%), Query Frame = 1
Query:  175 SGPNGVAAGASG-NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 687
            S  N  ++  SG +Q   T+LY+  L  N TD  L  L    G+++S +   D +T +  GYG+V++ +PA A +A+  L    +  +  +     +DP+       N++I NL  S+D + L +    FG ++S ++  D SG S+G GF + E+ E  +  I   NG  I
Sbjct:   44 SNNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSALKANGVQAQMAK--QQEQDPT-------NLYISNLPLSMDEQELENMLKPFGQVISTRVLRDSSGASRGVGFARMESTEKCEAVIGHFNGKFI 206          
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: RBMS2_HUMAN (RNA-binding motif, single-stranded-interacting protein 2 OS=Homo sapiens GN=RBMS2 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.818e-17
Identity = 53/185 (28.65%), Postives = 88/185 (47.57%), Query Frame = 1
Query:  133 VVMAQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 687
            V +AQ         S PN  +     +Q   T+LY+  L    TD  L  L    G+++S +   D +T +  GYG+V++ +P+ A +A+  L  + +  +  +     +DP+       N++I NL  S+D + L      FG ++S +I  D SG S+G GF + E+ E  +  I   NG  I
Sbjct:   25 VSLAQQMAPPSPSNSTPNSSSGSNGNDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAK--QQEQDPT-------NLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEKCEAIITHFNGKYI 200          
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.807e-17
Identity = 57/185 (30.81%), Postives = 89/185 (48.11%), Query Frame = 1
Query:  232 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDP------------SIRKSGTG-------------NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 708
            L+VG+L FNV  +QL  LF   G V  V V  D  T RS G+G+V  ++ ++   A    N   L+ + +R+      P            S   SG+G              +++ NL   +D  AL   FS  G ++  ++  D  SG+SKGFGFV +++ +  QNAI  L+G  ++ +Q+ V
Sbjct:   93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRV 277          
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: RBMS2_MOUSE (RNA-binding motif, single-stranded-interacting protein 2 OS=Mus musculus GN=Rbms2 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.807e-17
Identity = 54/187 (28.88%), Postives = 89/187 (47.59%), Query Frame = 1
Query:  139 MAQIQVQHQAQMSGPNGVAAGASGN----QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 687
            +AQ       + S PN    G  G+    Q   T+LY+  L    TD  L  L    G+++S +   D +T +  GYG+V++ +P+ A +A+  L  + +  +  +     +DP+       N++I NL  S+D + L      FG ++S +I  D SG S+G GF + E+ E  +  I   NG  I
Sbjct:   25 VAQQMAPPSPRNSTPNSSGGGGGGSGGNDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSSAQKAVTALKASGVQAQMAK--QQEQDPT-------NLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGASRGVGFARMESTEKCEAIITHFNGKYI 202          
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: RBMS1_HUMAN (RNA-binding motif, single-stranded-interacting protein 1 OS=Homo sapiens GN=RBMS1 PE=1 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 4.807e-17
Identity = 52/172 (30.23%), Postives = 88/172 (51.16%), Query Frame = 1
Query:  175 SGPNGVAAGASG-NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 687
            S  N  ++  SG +Q   T+LY+  L  + TD  L  L    G+++S +   D +T +  GYG+V++ +PA A +A+  L  + +  +  +     +DP+       N++I NL  S+D + L +    FG ++S +I  D SG S+G GF + E+ E  +  I   NG  I
Sbjct:   44 SNNNSSSSSNSGWDQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAK--QQEQDPT-------NLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFI 206          
The following BLAST results are available for this feature:
BLAST of CB290658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
TIAR_HUMAN1.265e-1728.44Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=... [more]
RBMS1_BOVIN1.265e-1730.81RNA-binding motif, single-stranded-interacting pro... [more]
PUB1_YEAST1.265e-1728.65Nuclear and cytoplasmic polyadenylated RNA-binding... [more]
RBMS1_RAT1.652e-1730.23RNA-binding motif, single-stranded-interacting pro... [more]
RBMS2_BOVIN2.158e-1728.11RNA-binding motif, single-stranded-interacting pro... [more]
RBMS1_MOUSE2.158e-1730.23RNA-binding motif, single-stranded-interacting pro... [more]
RBMS2_HUMAN2.818e-1728.65RNA-binding motif, single-stranded-interacting pro... [more]
ROC1_ARATH4.807e-1730.81Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]
RBMS2_MOUSE4.807e-1728.88RNA-binding motif, single-stranded-interacting pro... [more]
RBMS1_HUMAN4.807e-1730.23RNA-binding motif, single-stranded-interacting pro... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cg10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cg10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290658 ID=CB290658; Name=CB290658; organism=Citrus sinensis; type=EST; length=845bp
GGTTTTTTCCCCTAGAATTATAGTCATAGAATCAGATTATTTATCCTGTT
ATCTCTCTAGATTTTTATTTGAGAACTAGCAAGAGAAGAGGGAAATAAAA
AAGCCAAAAAAAAAAAGAAGGATCTAGAAGTGGTAGTGATGGCACAGATT
CAGGTGCAACATCAAGCGCAAATGTCGGGGCCAAACGGAGTGGCGGCGGG
TGCGTCAGGGAACCAGTTCCTAACGACGTCTCTTTATGTTGGCGATCTCG
ATTTCAACGTGACCGATTCGCAGCTTTATGATCTGTTCAGCCAGGTCGGT
CAAGTTCTGTCGGTTAGGGTTTGTCGGGACCTGAGCACCAGGCGCTCACT
CGGCTATGGTTACGTTAACTACGCCAACCCTGCAGATGCGGCAAGGGCAC
TGGATGTTCTTAACTTCACTCCACTTAATAATAAGTCCATTAGAATCATG
TATTCCCATCGGGATCCTAGTATTCGGAAAAGCGGTACTGGGAACATATT
TATCAAGAATTTGGACAAGTCTATTGATCACAAAGCATTACACGATACAT
TTTCTTCATTCGGAAACATTCTTTCTTGTAAGATAGCTACTGATGGTTCT
GGCCAGTCCAAAGGTTTCGGTTTTGTGCAATTTGAGAACAAAGAATCTGC
TCAAAATGCTATTGATAAGTTAAATGGCATGCTTATTAATGATAAACAAG
TGTTTGTTGGGCACTTTCTTCGTAAGCAGGAAAGAGAAACTGTAGCAATT
AAAACAAAATTCAATAACGTATTTGTCAAAAACCTTGCTGAGTCCACTAC
AGATGAAGATTTGAAGAAATTTTTTGGTGAGTATGGAACAATTAC
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