CB290658
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: TIAR_HUMAN (Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.265e-17 Identity = 64/225 (28.44%), Postives = 110/225 (48.89%), Query Frame = 1 Query: 229 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN---IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK-------QERETVAIK---------TKFNNVFVKNLAESTTDEDLKKFFGEYGTI 843 +LYVG+L +VT+ + LFSQ+G S ++ + ++ Y +V + DAA AL +N + K +++ ++ PS +K T N +F+ +L I + + F+ FG I ++ D +G+SKG+GFV F NK A+NAI + G + +Q+ RK QE T ++ K V+ +A TD+ +++ F +G I Sbjct: 10 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQI 231 HSP 2 Score: 76.2554 bits (186), Expect = 2.469e-13 Identity = 47/172 (27.33%), Postives = 80/172 (46.51%), Query Frame = 1 Query: 232 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN--------------------IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 687 ++VGDL +T + F+ G++ RV +D++T +S GYG+V++ N DA A+ + L + IR ++ R P KS N ++ + + + + TFS FG I+ ++ + KG+ FV+F ESA +AI +NG I Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 265
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: RBMS1_BOVIN (RNA-binding motif, single-stranded-interacting protein 1 OS=Bos taurus GN=RBMS1 PE=2 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.265e-17 Identity = 53/172 (30.81%), Postives = 88/172 (51.16%), Query Frame = 1 Query: 175 SGPNGVAAGASG-NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 687 S N ++ SG +Q T+LY+ L N TD L L G+++S + D +T + GYG+V++ +PA A +A+ L + + + + +DP+ N++I NL S+D + L + FG ++S +I D SG S+G GF + E+ E + I NG I Sbjct: 44 SNNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAK--QQEQDPT-------NLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFI 206
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: PUB1_YEAST (Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 OS=Saccharomyces cerevisiae GN=PUB1 PE=1 SV=3) HSP 1 Score: 90.5077 bits (223), Expect = 1.265e-17 Identity = 53/185 (28.65%), Postives = 95/185 (51.35%), Query Frame = 1 Query: 151 QVQHQAQMSGPNGVAAGA--SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDK 696 Q + + P+ V A A G + LYVG+LD +T+ L F G + ++++ D +++ Y +V Y DA AL LN + N ++I ++ + T N+F+ +L+ ++D + L + F F + LS + D +G S+G+GFV F +++ AQNA+D + G +N + Sbjct: 48 QAEDNQGENDPSVVPANAITGGRETSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMID-KNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGR 231
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: RBMS1_RAT (RNA-binding motif, single-stranded-interacting protein 1 OS=Rattus norvegicus GN=Rbms1 PE=2 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.652e-17 Identity = 52/172 (30.23%), Postives = 88/172 (51.16%), Query Frame = 1 Query: 175 SGPNGVAAGASG-NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 687 S N ++ SG +Q T+LY+ L N TD L L G+++S + D +T + GYG+V++ +PA A +A+ L + + + + +DP+ N++I NL S+D + L + FG ++S ++ D SG S+G GF + E+ E + I NG I Sbjct: 44 SNNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAK--QQEQDPT-------NLYISNLPLSMDEQELENMLKPFGQVISTRVLRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFI 206
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: RBMS2_BOVIN (RNA-binding motif, single-stranded-interacting protein 2 OS=Bos taurus GN=RBMS2 PE=2 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 2.158e-17 Identity = 52/185 (28.11%), Postives = 90/185 (48.65%), Query Frame = 1 Query: 133 VVMAQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 687 V ++Q S PN + + +Q T+LY+ L + TD L L G+++S + D +T + GYG+V++ +P+ A +A+ L + + + + +DP+ N++I NL S+D + L FG ++S +I D SG S+G GF + E+ E + I NG I Sbjct: 25 VSLSQQMAPPSPSSSTPNSSSGSTAHDQLSKTNLYIRGLQPSTTDQDLVKLCQSYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAK--QQEQDPT-------NLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEKCEAIITHFNGKYI 200
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: RBMS1_MOUSE (RNA-binding motif, single-stranded-interacting protein 1 OS=Mus musculus GN=Rbms1 PE=2 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 2.158e-17 Identity = 52/172 (30.23%), Postives = 87/172 (50.58%), Query Frame = 1 Query: 175 SGPNGVAAGASG-NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 687 S N ++ SG +Q T+LY+ L N TD L L G+++S + D +T + GYG+V++ +PA A +A+ L + + + +DP+ N++I NL S+D + L + FG ++S ++ D SG S+G GF + E+ E + I NG I Sbjct: 44 SNNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSALKANGVQAQMAK--QQEQDPT-------NLYISNLPLSMDEQELENMLKPFGQVISTRVLRDSSGASRGVGFARMESTEKCEAVIGHFNGKFI 206
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: RBMS2_HUMAN (RNA-binding motif, single-stranded-interacting protein 2 OS=Homo sapiens GN=RBMS2 PE=1 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.818e-17 Identity = 53/185 (28.65%), Postives = 88/185 (47.57%), Query Frame = 1 Query: 133 VVMAQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 687 V +AQ S PN + +Q T+LY+ L TD L L G+++S + D +T + GYG+V++ +P+ A +A+ L + + + + +DP+ N++I NL S+D + L FG ++S +I D SG S+G GF + E+ E + I NG I Sbjct: 25 VSLAQQMAPPSPSNSTPNSSSGSNGNDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAK--QQEQDPT-------NLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEKCEAIITHFNGKYI 200
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 4.807e-17 Identity = 57/185 (30.81%), Postives = 89/185 (48.11%), Query Frame = 1 Query: 232 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDP------------SIRKSGTG-------------NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 708 L+VG+L FNV +QL LF G V V V D T RS G+G+V ++ ++ A N L+ + +R+ P S SG+G +++ NL +D AL FS G ++ ++ D SG+SKGFGFV +++ + QNAI L+G ++ +Q+ V Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRV 277
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: RBMS2_MOUSE (RNA-binding motif, single-stranded-interacting protein 2 OS=Mus musculus GN=Rbms2 PE=2 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 4.807e-17 Identity = 54/187 (28.88%), Postives = 89/187 (47.59%), Query Frame = 1 Query: 139 MAQIQVQHQAQMSGPNGVAAGASGN----QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 687 +AQ + S PN G G+ Q T+LY+ L TD L L G+++S + D +T + GYG+V++ +P+ A +A+ L + + + + +DP+ N++I NL S+D + L FG ++S +I D SG S+G GF + E+ E + I NG I Sbjct: 25 VAQQMAPPSPRNSTPNSSGGGGGGSGGNDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSSAQKAVTALKASGVQAQMAK--QQEQDPT-------NLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGASRGVGFARMESTEKCEAIITHFNGKYI 202
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: RBMS1_HUMAN (RNA-binding motif, single-stranded-interacting protein 1 OS=Homo sapiens GN=RBMS1 PE=1 SV=3) HSP 1 Score: 88.5817 bits (218), Expect = 4.807e-17 Identity = 52/172 (30.23%), Postives = 88/172 (51.16%), Query Frame = 1 Query: 175 SGPNGVAAGASG-NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 687 S N ++ SG +Q T+LY+ L + TD L L G+++S + D +T + GYG+V++ +PA A +A+ L + + + + +DP+ N++I NL S+D + L + FG ++S +I D SG S+G GF + E+ E + I NG I Sbjct: 44 SNNNSSSSSNSGWDQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAK--QQEQDPT-------NLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFI 206 The following BLAST results are available for this feature:
BLAST of CB290658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 170
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Sequences
The
following sequences are available for this feature:
EST sequence >CB290658 ID=CB290658; Name=CB290658; organism=Citrus sinensis; type=EST; length=845bpback to top |