CB290659

Overview
NameCB290659
Unique NameCB290659
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB290659 vs. ExPASy Swiss-Prot
Match: EF1A_PEA (Elongation factor 1-alpha OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 6.277e-72
Identity = 131/142 (92.25%), Postives = 139/142 (97.89%), Query Frame = -2 
Query:  375 NVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 800
            NV FNVKNVAVKDLK G VASNSKDDPA++AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+EL+TKIDRRSGKE+EKEPKFLKNGDAGMVKMIPTKPMVVETF++YPPLGRFAVRDMRQTVAVGVIK+VEKKDPTG
Sbjct:  295 NVRFNVKNVAVKDLKHGLVASNSKDDPAKDAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELITKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 436
[Close]
BLAST of CB290659 vs. ExPASy Swiss-Prot
Match: EF1A1_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 9.063e-71
Identity = 130/142 (91.55%), Postives = 139/142 (97.89%), Query Frame = -2 
Query:  375 NVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 800
            NVGFNVKNV+VKDLKRG+VASNSKDDPA+ AA+FTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+EL+TKIDRRSGKELEKEPKFLKNGDAGMVKM+PTKPMVVETF++YPPLGRFAVR MRQTVAVGVIK VEKKDPTG
Sbjct:  295 NVGFNVKNVSVKDLKRGYVASNSKDDPAKGAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELLTKIDRRSGKELEKEPKFLKNGDAGMVKMLPTKPMVVETFAEYPPLGRFAVRVMRQTVAVGVIKAVEKKDPTG 436
[Close]
BLAST of CB290659 vs. ExPASy Swiss-Prot
Match: EF1A2_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare GN=BLT63 PE=1 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 7.673e-70
Identity = 128/142 (90.14%), Postives = 136/142 (95.77%), Query Frame = -2 
Query:  375 NVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 800
            NVGFNVKNVAVKDLKRG+VASNSKDDPA+EAANFT+QVIIMNHPGQI NGYAPVLDCHTSHIAVKF+E+ TKIDRRSGKELE  PKFLKNGDAG VKMIPTKPMVVETF+ YPPLGRFAVRDMRQTVAVGVIK+VEKK+PTG
Sbjct:  295 NVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTAQVIIMNHPGQISNGYAPVLDCHTSHIAVKFAEIQTKIDRRSGKELEAAPKFLKNGDAGFVKMIPTKPMVVETFAQYPPLGRFAVRDMRQTVAVGVIKSVEKKEPTG 436
[Close]
BLAST of CB290659 vs. ExPASy Swiss-Prot
Match: EF1A1_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 7.673e-70
Identity = 128/142 (90.14%), Postives = 136/142 (95.77%), Query Frame = -2 
Query:  375 NVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 800
            NVGFNVKNVAVKDLKRG+VASNSKDDPA+EAANFT+QVIIMNHPGQI NGYAPVLDCHTSHIAVKF+E+ TKIDRRSGKELE  PKFLKNGDAG VKMIPTKPMVVETF+ YPPLGRFAVRDMRQTVAVGVIK+VEKK+PTG
Sbjct:  295 NVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTAQVIIMNHPGQISNGYAPVLDCHTSHIAVKFAEIQTKIDRRSGKELEAAPKFLKNGDAGFVKMIPTKPMVVETFAQYPPLGRFAVRDMRQTVAVGVIKSVEKKEPTG 436
[Close]
BLAST of CB290659 vs. ExPASy Swiss-Prot
Match: EF1A_TRYBB (Elongation factor 1-alpha OS=Trypanosoma brucei brucei GN=TEF1 PE=1 SV=3)

HSP 1 Score: 224.942 bits (572), Expect = 3.950e-58
Identity = 106/142 (74.65%), Postives = 126/142 (88.73%), Query Frame = -2 
Query:  375 NVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 800
            NVGFNVKNV+VKD++RG V  N+K+DP +EAA+FT+QVII+NHPGQIGNGYAPVLDCHTSHIA KF+E+ +KIDRRSGKELEK PK +K+GDA +V+M+P KPM VE F+DY PLGRFAVRDMRQTVAVG+IK V KKD +G
Sbjct:  295 NVGFNVKNVSVKDIRRGNVCGNTKNDPPKEAADFTAQVIILNHPGQIGNGYAPVLDCHTSHIACKFAEIESKIDRRSGKELEKAPKSIKSGDAAIVRMVPQKPMCVEVFNDYAPLGRFAVRDMRQTVAVGIIKAVTKKDGSG 436
[Close]
BLAST of CB290659 vs. ExPASy Swiss-Prot
Match: EF1A_ABSGL (Elongation factor 1-alpha OS=Absidia glauca GN=TEF-1 PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 5.158e-58
Identity = 106/142 (74.65%), Postives = 127/142 (89.44%), Query Frame = -2 
Query:  375 NVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 800
            NVGFNVKNV+VKD++RG V S+SK+DPA+EA +FT+QVI++NHPGQIG GYAPVLDCHT+HIA KF+EL+ KIDRRSGK+LE  PKF+K+GD+ +VKMIP+KPM VE ++DYPPLGRFAVRDMRQTVAVGVIK VEK D  G
Sbjct:  305 NVGFNVKNVSVKDIRRGNVCSDSKNDPAKEAGSFTAQVIVLNHPGQIGAGYAPVLDCHTAHIACKFAELLEKIDRRSGKKLEDAPKFVKSGDSAIVKMIPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVDKAG 446
[Close]
BLAST of CB290659 vs. ExPASy Swiss-Prot
Match: EF1A2_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-2 PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 6.737e-58
Identity = 105/142 (73.94%), Postives = 127/142 (89.44%), Query Frame = -2 
Query:  375 NVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 800
            NVGFNVKNV+VKD++RG V S+SK+DPA+E+A+FT+QVII+NHPGQI  GYAPVLDCHT+HIA KFSEL+ KIDRRSGK++E  PKF+K+GD+ +VKM+P+KPM VE ++DYPPLGRFAVRDMRQTVAVGVIK VEK D  G
Sbjct:  305 NVGFNVKNVSVKDIRRGNVCSDSKNDPAKESASFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFSELIEKIDRRSGKKMEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVDKAG 446
[Close]
BLAST of CB290659 vs. ExPASy Swiss-Prot
Match: EF1A1_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-1 PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 6.737e-58
Identity = 105/142 (73.94%), Postives = 127/142 (89.44%), Query Frame = -2 
Query:  375 NVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 800
            NVGFNVKNV+VKD++RG V S+SK+DPA+E+A+FT+QVII+NHPGQI  GYAPVLDCHT+HIA KFSEL+ KIDRRSGK++E  PKF+K+GD+ +VKM+P+KPM VE ++DYPPLGRFAVRDMRQTVAVGVIK VEK D  G
Sbjct:  305 NVGFNVKNVSVKDIRRGNVCSDSKNDPAKESASFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFSELIEKIDRRSGKKMEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVDKAG 446
[Close]
BLAST of CB290659 vs. ExPASy Swiss-Prot
Match: EF1A_PIRIN (Elongation factor 1-alpha OS=Piriformospora indica GN=TEF1 PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.960e-57
Identity = 103/142 (72.54%), Postives = 129/142 (90.85%), Query Frame = -2 
Query:  375 NVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 800
            NVGFNVKNV+VKD++RG VAS+SK+DPA+EAA+F +QVI++NHPGQIG GYAPVLDCHT+HIA KFSEL+ KIDRR+GK +E  PKF+K+GDA +VK++P+KPM VE++++YPPLGRFAVRDMRQTVAVGVIK+VEK +  G
Sbjct:  307 NVGFNVKNVSVKDIRRGDVASDSKNDPAKEAASFNAQVIVLNHPGQIGAGYAPVLDCHTAHIACKFSELIEKIDRRTGKTMEAAPKFVKSGDAAIVKLVPSKPMCVESYNEYPPLGRFAVRDMRQTVAVGVIKSVEKTEGKG 448
[Close]
BLAST of CB290659 vs. ExPASy Swiss-Prot
Match: EF1A_SCHCO (Elongation factor 1-alpha OS=Schizophyllum commune GN=TEF1 PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.560e-57
Identity = 102/142 (71.83%), Postives = 130/142 (91.55%), Query Frame = -2 
Query:  375 NVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 800
            NVGFNVKNV+VKD++RG VAS+SK+DPA+EAA+F +QVI++NHPGQIG GYAPVLDCHT+HIA KF+EL+ KIDRR+GK LE  PKF+K+GDA +VK++P+KPM VE++++YPPLGRFAVRDMRQTVAVG+IK+V+K D +G
Sbjct:  305 NVGFNVKNVSVKDIRRGNVASDSKNDPAKEAASFNAQVIVLNHPGQIGAGYAPVLDCHTAHIACKFAELLEKIDRRTGKSLEASPKFVKSGDACIVKLVPSKPMCVESYNEYPPLGRFAVRDMRQTVAVGIIKSVDKTDKSG 446
The following BLAST results are available for this feature:
BLAST of CB290659 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
EF1A_PEA6.277e-7292.25Elongation factor 1-alpha OS=Pisum sativum PE=2 SV... [more]
EF1A1_DAUCA9.063e-7191.55Elongation factor 1-alpha OS=Daucus carota PE=3 SV... [more]
EF1A2_HORVU7.673e-7090.14Elongation factor 1-alpha OS=Hordeum vulgare GN=BL... [more]
EF1A1_HORVU7.673e-7090.14Elongation factor 1-alpha OS=Hordeum vulgare PE=1 ... [more]
EF1A_TRYBB3.950e-5874.65Elongation factor 1-alpha OS=Trypanosoma brucei br... [more]
EF1A_ABSGL5.158e-5874.65Elongation factor 1-alpha OS=Absidia glauca GN=TEF... [more]
EF1A2_RHIRA6.737e-5873.94Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A1_RHIRA6.737e-5873.94Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A_PIRIN1.960e-5772.54Elongation factor 1-alpha OS=Piriformospora indica... [more]
EF1A_SCHCO2.560e-5771.83Elongation factor 1-alpha OS=Schizophyllum commune... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cg11_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cg11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290659 ID=CB290659; Name=CB290659; organism=Citrus sinensis; type=EST; length=801bp
TTTTTTTTTTTTTTAACGAAAAGTAGATATCAATTCCGCAGAACCATTAC
AAGGACAAAACTTCTGAGCCGATTCAGATGAAACCCAACCACCTCAAGTA
TCAATACAAACAAAGACCATAACTATTAATAAAATTGAGACTCCAGGTTA
GAGCTGCGCCACCGCCTGTCAAGCACCCAATTCTGGGAATCGGTACCCGA
CACCAAAGGCAACAAACTAAAACCTAAAAAGGAAAGCATGCATCGAACTA
TAACAGTACCAAAAATAACCAAGTTTGTATAACTACAATTATTAAAATAG
ACTCCATCTGCGGATAAAGCAACATTAACCAACCCGATTCACTTCTTCTT
GGCTGCAGACTTGGTGACCTTGGCACCTGTTGGATCCTTCTTTTCAACAT
TCTTAATCACACCAACAGCAACAGTCTGACGCATGTCCCTAACGGCAAAA
CGACCAAGAGGTGGGTAGTCAGAGAAGGTTTCAACAACCATGGGCTTGGT
GGGAATCATCTTAACCATTCCAGCATCTCCATTCTTCAAGAACTTGGGCT
CCTTCTCAAGCTCCTTGCCTGATCGCCTATCAATCTTCGTCACGAGCTCA
GAAAACTTGACGGCAATGTGGGAGGTGTGGCAGTCAAGCACTGGGGCATA
TCCATTTCCAATCTGGCCAGGGTGGTTCATGATGATGACCTGTGAGGTGA
AGTTGGCAGCTTCCCTGGCCGGATCATCCTTCGAGTTGGAAGCAACAAAA
CCACGCTTGAGATCCTTGACAGCAACGTTCTTCACGTTGAAGCCAACATT
G
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