CB290659

Overview
NameCB290659
Unique NameCB290659
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290659 vs. ExPASy Swiss-Prot
Match: EF1A_METHJ (Elongation factor 1-alpha OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=tuf PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.367e-33
Identity = 67/138 (48.55%), Postives = 93/138 (67.39%), Query Frame = -2
Query:  387 NVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 800
            N+GFNV+ +   D++RG V   S D+P   A  FT+Q++++ HP  I  GY PV  CHT+  A  F+ELV K+D R+G+ LE+ P FLK GDA ++K  PTKP+ +E   ++P LGRFA+RDM QT+A G+  NV KK
Sbjct:  286 NIGFNVRGIGKDDVRRGDVCGAS-DNPPAVAEEFTAQIVVLQHPSAITVGYTPVFHCHTAQTACTFTELVKKLDPRTGQTLEENPTFLKAGDAAIIKCHPTKPLCLENAKEFPQLGRFAIRDMGQTIAAGMCINVVKK 422          
BLAST of CB290659 vs. ExPASy Swiss-Prot
Match: EF1A_METS5 (Elongation factor 1-alpha OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=tuf PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.397e-33
Identity = 67/136 (49.26%), Postives = 98/136 (72.06%), Query Frame = -2
Query:  393 NVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVE 800
            N+GFNV+ +  KD+KRG V  ++ + P   A  FT++VI++ HP  +  GY PV+  HT+ IA + SE+V ++D ++GKE EK P+F+K G++ +VK  P KP+ VE FSD+PPLGRFA+RDM +TV VGVI +V+
Sbjct:  294 NIGFNVRGIDKKDVKRGDVVGHTTNPPT-VAEEFTARVIVVWHPTALAVGYTPVVHVHTASIACRVSEIVARLDPKTGKEAEKNPQFIKQGESAIVKFKPIKPLCVEKFSDFPPLGRFAMRDMGKTVGVGVINDVK 428          
BLAST of CB290659 vs. ExPASy Swiss-Prot
Match: EF1A_THESM (Elongation factor 1-alpha OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=tuf PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.743e-33
Identity = 65/139 (46.76%), Postives = 97/139 (69.78%), Query Frame = -2
Query:  390 NVGFNVKNVAVKDLKRGFVASNSKDDPA--REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 800
            N+GFNV+ V   D+KRG VA ++ + P   R    F +Q+I++NHP  I  GY PVL  HT+ +AV+F +L+ K+D R+G  +E+ P+F+K GD+ +V + PTKPMV+E   + P LGRFA+RDM QTVA G++ +++K
Sbjct:  288 NIGFNVRGVGKNDIKRGDVAGHTTNPPTVVRPRDTFKAQIIVLNHPTAITIGYTPVLHAHTTQVAVRFEQLLAKLDPRTGNVVEENPQFIKTGDSAIVVLRPTKPMVIEPVKELPQLGRFAIRDMGQTVAAGMVISIQK 426          
BLAST of CB290659 vs. ExPASy Swiss-Prot
Match: EF1A_THEON (Elongation factor 1-alpha OS=Thermococcus onnurineus (strain NA1) GN=tuf PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.279e-32
Identity = 64/141 (45.39%), Postives = 97/141 (68.79%), Query Frame = -2
Query:  384 NVGFNVKNVAVKDLKRGFVASNSKDDPA--REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 800
            N+GFNV+ V   D+KRG VA ++ + P   R    F +Q+I++NHP  I  GY PVL  HT  +AV+F +L+ K+D R+G  +E+ P+F+K GD+ +V + PTKPMV+E   + P +GRFA+RDM QTVA G++ +++K +
Sbjct:  288 NIGFNVRGVGKNDIKRGDVAGHTNNPPTVVRPKDTFKAQIIVLNHPTAITIGYTPVLHAHTLQVAVRFEQLLAKLDPRTGNVVEENPQFIKTGDSAIVVLRPTKPMVIEPVKEIPQMGRFAIRDMGQTVAAGMVISIQKAE 428          
BLAST of CB290659 vs. ExPASy Swiss-Prot
Match: EF1A_METJA (Elongation factor 1-alpha OS=Methanocaldococcus jannaschii GN=tuf PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.279e-32
Identity = 66/139 (47.48%), Postives = 96/139 (69.06%), Query Frame = -2
Query:  384 NVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 800
            N+GFNV+ V+ KD+KRG V  +  D+P   A  FT+Q++++ HP  I  GY PV   HT+ +A  F EL+ K+D R+G+ +E+ P+FLK GDA +VK+ PTKPMV+E   + P LGRFA+RDM  T+A G+  +V+ K+
Sbjct:  290 NIGFNVRGVSKKDIKRGDVCGHP-DNPPTVAEEFTAQIVVLQHPTAITVGYTPVFHAHTAQVACTFIELLKKLDPRTGQVIEENPQFLKTGDAAIVKIKPTKPMVIENVREIPQLGRFAIRDMGMTIAAGMAIDVKAKN 427          
BLAST of CB290659 vs. ExPASy Swiss-Prot
Match: EF1A_THECE (Elongation factor 1-alpha OS=Thermococcus celer GN=tuf PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.671e-32
Identity = 64/141 (45.39%), Postives = 97/141 (68.79%), Query Frame = -2
Query:  384 NVGFNVKNVAVKDLKRGFVASNSKDDPA--REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 800
            N+GFNV+ V   D+KRG VA ++ + P   R    F +Q+I++NHP  I  GY PVL  HT  +AV+F +L+ K+D R+G  +E+ P+F+K GD+ +V + PTKPMV+E   + P +GRFA+RDM QTVA G++ +++K +
Sbjct:  288 NIGFNVRGVGKNDIKRGDVAGHTNNPPTVVRPKDTFKAQIIVLNHPTAITVGYTPVLHAHTLQVAVRFEQLLAKLDPRTGNIVEENPQFIKTGDSAIVVLRPTKPMVIEPVKEIPQMGRFAIRDMGQTVAAGMVISIQKAE 428          
BLAST of CB290659 vs. ExPASy Swiss-Prot
Match: EF1A_DESMO (Elongation factor 1-alpha OS=Desulfurococcus mobilis GN=tuf PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.671e-32
Identity = 67/136 (49.26%), Postives = 94/136 (69.12%), Query Frame = -2
Query:  393 NVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVE 800
            N+GFNVK V  KD+KRG VA  S D P   A  FT+++++M HP  I  GY PV+  HT+ +A + +E++ KID R+GKE+EK P FLK GD  +VK  P KP+VVE +SD+  LGRFA+RDM +T+ +G +  ++
Sbjct:  296 NIGFNVKGVEKKDIKRGDVAG-SLDVPPTVADEFTARIMVMWHPTAIAVGYTPVIHVHTASVACRITEIIAKIDPRTGKEIEKNPHFLKQGDIAIVKFKPIKPLVVEKYSDFQGLGRFAMRDMGKTIGIGQVLEIK 430          
BLAST of CB290659 vs. ExPASy Swiss-Prot
Match: EF1A_SULAC (Elongation factor 1-alpha OS=Sulfolobus acidocaldarius GN=tuf PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.182e-32
Identity = 70/138 (50.72%), Postives = 97/138 (70.29%), Query Frame = -2
Query:  387 NVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 800
            N+GFNV+ V  KD+KRG VA  S  +P   A  FT+QVI++ HP  +G GY PVL  HT+ IA + SE+ ++ID ++GKE EK P+F+K GD+ +VK  P K +V E F ++P LGRFA+RDM +TV VGVI +V+ +
Sbjct:  294 NIGFNVRGVEKKDVKRGDVAG-SVQNPPTVADEFTAQVIVIWHPTAVGVGYTPVLHVHTASIACRVSEITSRIDPKTGKEAEKNPQFIKAGDSAIVKFKPIKELVAEKFREFPALGRFAMRDMGKTVGVGVIIDVKPR 430          
BLAST of CB290659 vs. ExPASy Swiss-Prot
Match: EF1A_PYRKO (Elongation factor 1-alpha OS=Pyrococcus kodakaraensis GN=tuf PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.723e-32
Identity = 64/141 (45.39%), Postives = 97/141 (68.79%), Query Frame = -2
Query:  384 NVGFNVKNVAVKDLKRGFVASNSKDDPA--REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 800
            N+GFNV+ V   D+KRG VA ++ + P   R    F +Q+I++NHP  I  GY PVL  HT+ +AV+F +L+ K+D R+G  +E+ P+F+K GD+ +V + PTK MV+E   + P +GRFA+RDM QTVA G++ +++K D
Sbjct:  288 NIGFNVRGVGKNDIKRGDVAGHTTNPPTVVRPKDTFKAQIIVLNHPTAITVGYTPVLHAHTTQVAVRFEQLLAKLDPRTGNIVEENPQFIKTGDSAIVILRPTKAMVIEPVKEIPQMGRFAIRDMGQTVAAGMVISIQKAD 428          
BLAST of CB290659 vs. ExPASy Swiss-Prot
Match: EF1A_METKA (Elongation factor 1-alpha OS=Methanopyrus kandleri GN=tuf PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.723e-32
Identity = 68/142 (47.89%), Postives = 93/142 (65.49%), Query Frame = -2
Query:  384 NVGFNVKNVAVKDLKRGFVASNSKDDPAREAA---NFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 800
            N+GFNVK V   D+ RG VA +  D+PA        F +Q++++ HP  I  GY PV  CHT+ +A KF EL+ KID  +G+ +E+ P FLK G+A  V++ PTKPMV+E  S  P LGRFA+RDM QTVA G+   +EK++
Sbjct:  283 NIGFNVKGVGKNDISRGDVACHP-DEPATVVTPDDTFIAQIVVLQHPSAITAGYTPVFHCHTAQVACKFEELIEKIDPATGEVIEENPDFLKTGEAAKVRIRPTKPMVIEEVSFIPQLGRFAIRDMGQTVAAGMCVKIEKEE 423          
The following BLAST results are available for this feature:
BLAST of CB290659 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
EF1A_METHJ3.367e-3348.55Elongation factor 1-alpha OS=Methanospirillum hung... [more]
EF1A_METS54.397e-3349.26Elongation factor 1-alpha OS=Metallosphaera sedula... [more]
EF1A_THESM5.743e-3346.76Elongation factor 1-alpha OS=Thermococcus sibiricu... [more]
EF1A_THEON1.279e-3245.39Elongation factor 1-alpha OS=Thermococcus onnurine... [more]
EF1A_METJA1.279e-3247.48Elongation factor 1-alpha OS=Methanocaldococcus ja... [more]
EF1A_THECE1.671e-3245.39Elongation factor 1-alpha OS=Thermococcus celer GN... [more]
EF1A_DESMO1.671e-3249.26Elongation factor 1-alpha OS=Desulfurococcus mobil... [more]
EF1A_SULAC2.182e-3250.72Elongation factor 1-alpha OS=Sulfolobus acidocalda... [more]
EF1A_PYRKO3.723e-3245.39Elongation factor 1-alpha OS=Pyrococcus kodakaraen... [more]
EF1A_METKA3.723e-3247.89Elongation factor 1-alpha OS=Methanopyrus kandleri... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cg11_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cg11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290659 ID=CB290659; Name=CB290659; organism=Citrus sinensis; type=EST; length=801bp
TTTTTTTTTTTTTTAACGAAAAGTAGATATCAATTCCGCAGAACCATTAC
AAGGACAAAACTTCTGAGCCGATTCAGATGAAACCCAACCACCTCAAGTA
TCAATACAAACAAAGACCATAACTATTAATAAAATTGAGACTCCAGGTTA
GAGCTGCGCCACCGCCTGTCAAGCACCCAATTCTGGGAATCGGTACCCGA
CACCAAAGGCAACAAACTAAAACCTAAAAAGGAAAGCATGCATCGAACTA
TAACAGTACCAAAAATAACCAAGTTTGTATAACTACAATTATTAAAATAG
ACTCCATCTGCGGATAAAGCAACATTAACCAACCCGATTCACTTCTTCTT
GGCTGCAGACTTGGTGACCTTGGCACCTGTTGGATCCTTCTTTTCAACAT
TCTTAATCACACCAACAGCAACAGTCTGACGCATGTCCCTAACGGCAAAA
CGACCAAGAGGTGGGTAGTCAGAGAAGGTTTCAACAACCATGGGCTTGGT
GGGAATCATCTTAACCATTCCAGCATCTCCATTCTTCAAGAACTTGGGCT
CCTTCTCAAGCTCCTTGCCTGATCGCCTATCAATCTTCGTCACGAGCTCA
GAAAACTTGACGGCAATGTGGGAGGTGTGGCAGTCAAGCACTGGGGCATA
TCCATTTCCAATCTGGCCAGGGTGGTTCATGATGATGACCTGTGAGGTGA
AGTTGGCAGCTTCCCTGGCCGGATCATCCTTCGAGTTGGAAGCAACAAAA
CCACGCTTGAGATCCTTGACAGCAACGTTCTTCACGTTGAAGCCAACATT
G
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