CB290659

Overview
NameCB290659
Unique NameCB290659
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290659 vs. ExPASy Swiss-Prot
Match: EF1A_METM7 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=tuf PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.375e-31
Identity = 65/139 (46.76%), Postives = 94/139 (67.63%), Query Frame = -2
Query:  384 NVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 800
            N+GFNV+ V  KD+KRG V  ++ + P   AA+FT+Q++++ HP  +  GY PV   HT+ IA  F EL  K++  +G+ LE+ P FLK GDA +VK++PTKP+V+E+  + P LGRFA+RDM  TVA G+   V  K+
Sbjct:  290 NIGFNVRGVGKKDIKRGDVLGHTTNPPT-VAADFTAQIVVLQHPSVMTVGYTPVFHAHTAQIACTFMELQKKLNPATGEVLEENPDFLKAGDAAIVKLMPTKPLVIESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          
BLAST of CB290659 vs. ExPASy Swiss-Prot
Match: EF1A_METLZ (Elongation factor 1-alpha OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=tuf PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.375e-31
Identity = 66/138 (47.83%), Postives = 91/138 (65.94%), Query Frame = -2
Query:  387 NVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 800
            NVGFNV+ +A  D++RG V    ++ P   A  FT+QV+++ HP  +  GY PV  CHTS  A  F+EL  K+D RSG+  E+ P FLK GDA +  + PT+P+V+ET  + P LGRFAVRDM  TVA G++ +V+ K
Sbjct:  286 NVGFNVRGIAKNDVRRGDVCGPIENPPT-VAEEFTAQVVVLQHPSVLSVGYTPVFHCHTSQTACMFTELNKKLDPRSGQVKEENPAFLKAGDAAICTITPTRPLVIETAKELPQLGRFAVRDMGMTVAAGLVLSVKAK 422          
BLAST of CB290659 vs. ExPASy Swiss-Prot
Match: EF1A_THEPD (Elongation factor 1-alpha OS=Thermofilum pendens (strain Hrk 5) GN=tuf PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 9.169e-31
Identity = 62/139 (44.60%), Postives = 95/139 (68.35%), Query Frame = -2
Query:  384 NVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 800
            N+GFNVK V    L+RG VA ++ + P   A  FT ++ ++ HP  I  GY PVL  HT+ + V F EL+ K+D R+G   E++P+++K GD+ +V+  P KP+VVE +S++PPLGRFA+RD  +T+A GV+ +V+K +
Sbjct:  294 NIGFNVKGVEKSQLRRGDVAGHTTNPPT-VAEEFTGRIFVLYHPTAIAAGYTPVLHIHTATVPVTFEELLQKLDPRTGSVAEEKPQYIKQGDSAIVRFKPRKPVVVEKYSEFPPLGRFAIRDSGRTIAAGVVIDVKKAE 431          
BLAST of CB290659 vs. ExPASy Swiss-Prot
Match: EF1A_METMP (Elongation factor 1-alpha OS=Methanococcus maripaludis GN=tuf PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 9.169e-31
Identity = 65/139 (46.76%), Postives = 94/139 (67.63%), Query Frame = -2
Query:  384 NVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 800
            N+GFNV+ V  KD+KRG V  ++ + P   AA+FT+Q++++ HP  +  GY PV   HT+ IA  F EL  K++  +G+ LE+ P FLK GDA +VK++PTKP+V+E+  + P LGRFA+RDM  TVA G+   V  K+
Sbjct:  290 NIGFNVRGVGKKDIKRGDVLGHTTNPPT-VAADFTAQIVVLQHPSVMTVGYTPVFHAHTAQIACTFMELQKKLNPATGEVLEENPDFLKAGDAAIVKLMPTKPLVMESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          
BLAST of CB290659 vs. ExPASy Swiss-Prot
Match: EF1A_METM6 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=tuf PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 9.169e-31
Identity = 65/139 (46.76%), Postives = 94/139 (67.63%), Query Frame = -2
Query:  384 NVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 800
            N+GFNV+ V  KD+KRG V  ++ + P   AA+FT+Q++++ HP  +  GY PV   HT+ IA  F EL  K++  +G+ LE+ P FLK GDA +VK++PTKP+V+E+  + P LGRFA+RDM  TVA G+   V  K+
Sbjct:  290 NIGFNVRGVGKKDIKRGDVLGHTTNPPT-VAADFTAQIVVLQHPSVMTVGYTPVFHAHTAQIACTFMELQKKLNPATGEVLEENPDFLKAGDAAIVKLMPTKPLVMESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          
BLAST of CB290659 vs. ExPASy Swiss-Prot
Match: EF1A_METM5 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=tuf PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 9.169e-31
Identity = 65/139 (46.76%), Postives = 94/139 (67.63%), Query Frame = -2
Query:  384 NVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 800
            N+GFNV+ V  KD+KRG V  ++ + P   AA+FT+Q++++ HP  +  GY PV   HT+ IA  F EL  K++  +G+ LE+ P FLK GDA +VK++PTKP+V+E+  + P LGRFA+RDM  TVA G+   V  K+
Sbjct:  290 NIGFNVRGVGKKDIKRGDVLGHTTNPPT-VAADFTAQIVVLQHPSVMTVGYTPVFHAHTAQIACTFMELQKKLNPATGEVLEENPDFLKAGDAAIVKLMPTKPLVMESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          
BLAST of CB290659 vs. ExPASy Swiss-Prot
Match: EF1A_METB6 (Elongation factor 1-alpha OS=Methanoregula boonei (strain 6A8) GN=tuf PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.198e-30
Identity = 66/138 (47.83%), Postives = 89/138 (64.49%), Query Frame = -2
Query:  387 NVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 800
            NVGFNV+ +A  D++RG V   ++  P   A  FT+QV+++ HP  I  GY PV  CHT+  A  F EL  K+D RSG+  E+ P FLK GDA +V++ PTKPMV+E   + P LGRFAVRDM  T+A G+   ++ K
Sbjct:  286 NVGFNVRGIAKGDIRRGDVCGPAEQPPT-VADEFTAQVVVLQHPSAITVGYTPVFHCHTTQTACTFIELKKKLDPRSGQTKEENPTFLKTGDAAIVQIKPTKPMVIENVKELPQLGRFAVRDMGSTIAAGMCIAIQPK 422          
BLAST of CB290659 vs. ExPASy Swiss-Prot
Match: EF1A_GIALA (Elongation factor 1-alpha (Fragment) OS=Giardia lamblia GN=TEF1 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.198e-30
Identity = 63/121 (52.07%), Postives = 85/121 (70.25%), Query Frame = -2
Query:  438 NVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 800
            NVGFNV+ +AVKDLK+G+V  +  +DP     +FT+QVI+MNHP +I  GY PV+DCHT+HIA +F   + K+D+R+ K   + P     GD  +VKM+P KP+  ETF+DY PLG FAVR
Sbjct:  276 NVGFNVRGLAVKDLKKGYVVGDVTNDPPVGCKSFTAQVIVMNHPKKIQPGYTPVIDCHTAHIACQFQLFLQKLDKRTLKPEMENPPDAGRGDCIIVKMVPQKPLCCETFNDYAPLGPFAVR 396          
BLAST of CB290659 vs. ExPASy Swiss-Prot
Match: EF1A_PYRAE (Elongation factor 1-alpha OS=Pyrobaculum aerophilum GN=tuf PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.564e-30
Identity = 62/136 (45.59%), Postives = 96/136 (70.59%), Query Frame = -2
Query:  393 NVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVE 800
            N+G NV+ +A +D+KRG V     + P   A    ++++++ HP  IG GYAPV+  HT+ + V+ +ELV+K+D R+G+ +E++P+F+K GD  +VK+ P KP+V E FSD+PPLGRFA+RDM +T+A G I  V+
Sbjct:  303 NIGVNVRGIAKEDVKRGDVLGKPDNVPT-VAEEIVARIVVLWHPTAIGPGYAPVMHIHTATVPVQITELVSKLDPRTGQAVEQKPQFIKQGDVAIVKIKPLKPVVAEKFSDFPPLGRFALRDMGRTIAAGQILEVK 437          
BLAST of CB290659 vs. ExPASy Swiss-Prot
Match: EF1A_THEVO (Elongation factor 1-alpha OS=Thermoplasma volcanium GN=tuf PE=3 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 2.043e-30
Identity = 63/138 (45.65%), Postives = 90/138 (65.22%), Query Frame = -2
Query:  387 NVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 800
            N+GFNV+ +A  D+KRG V  +  D P      FT+Q++++NHP  I  GY PV   HT+ +A K  E+V  ++ + G  L+ +P F+K GD  +VK+IP KP+V+E  S+ P LGRFAVRDM QTVA G   ++EK+
Sbjct:  288 NIGFNVRGIAKNDIKRGDVCGHL-DSPPTVVRAFTAQIVVLNHPSVIAPGYKPVFHVHTAQVACKIDEIVRTLNPKDGTTLKDKPDFIKTGDIAIVKVIPDKPLVIEKVSEIPQLGRFAVRDMGQTVAAGQCIDLEKR 424          
The following BLAST results are available for this feature:
BLAST of CB290659 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
EF1A_METM75.375e-3146.76Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_METLZ5.375e-3147.83Elongation factor 1-alpha OS=Methanocorpusculum la... [more]
EF1A_THEPD9.169e-3144.60Elongation factor 1-alpha OS=Thermofilum pendens (... [more]
EF1A_METMP9.169e-3146.76Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_METM69.169e-3146.76Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_METM59.169e-3146.76Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_METB61.198e-3047.83Elongation factor 1-alpha OS=Methanoregula boonei ... [more]
EF1A_GIALA1.198e-3052.07Elongation factor 1-alpha (Fragment) OS=Giardia la... [more]
EF1A_PYRAE1.564e-3045.59Elongation factor 1-alpha OS=Pyrobaculum aerophilu... [more]
EF1A_THEVO2.043e-3045.65Elongation factor 1-alpha OS=Thermoplasma volcaniu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cg11_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cg11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290659 ID=CB290659; Name=CB290659; organism=Citrus sinensis; type=EST; length=801bp
TTTTTTTTTTTTTTAACGAAAAGTAGATATCAATTCCGCAGAACCATTAC
AAGGACAAAACTTCTGAGCCGATTCAGATGAAACCCAACCACCTCAAGTA
TCAATACAAACAAAGACCATAACTATTAATAAAATTGAGACTCCAGGTTA
GAGCTGCGCCACCGCCTGTCAAGCACCCAATTCTGGGAATCGGTACCCGA
CACCAAAGGCAACAAACTAAAACCTAAAAAGGAAAGCATGCATCGAACTA
TAACAGTACCAAAAATAACCAAGTTTGTATAACTACAATTATTAAAATAG
ACTCCATCTGCGGATAAAGCAACATTAACCAACCCGATTCACTTCTTCTT
GGCTGCAGACTTGGTGACCTTGGCACCTGTTGGATCCTTCTTTTCAACAT
TCTTAATCACACCAACAGCAACAGTCTGACGCATGTCCCTAACGGCAAAA
CGACCAAGAGGTGGGTAGTCAGAGAAGGTTTCAACAACCATGGGCTTGGT
GGGAATCATCTTAACCATTCCAGCATCTCCATTCTTCAAGAACTTGGGCT
CCTTCTCAAGCTCCTTGCCTGATCGCCTATCAATCTTCGTCACGAGCTCA
GAAAACTTGACGGCAATGTGGGAGGTGTGGCAGTCAAGCACTGGGGCATA
TCCATTTCCAATCTGGCCAGGGTGGTTCATGATGATGACCTGTGAGGTGA
AGTTGGCAGCTTCCCTGGCCGGATCATCCTTCGAGTTGGAAGCAACAAAA
CCACGCTTGAGATCCTTGACAGCAACGTTCTTCACGTTGAAGCCAACATT
G
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