CB290660

Overview
NameCB290660
Unique NameCB290660
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290660 vs. ExPASy Swiss-Prot
Match: EF1A_STAMF (Elongation factor 1-alpha OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=tuf PE=3 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 3.145e-75
Identity = 127/223 (56.95%), Postives = 172/223 (77.13%), Query Frame = 1
Query:   70 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNI 738
            M   K H+N+VVIGHVD GKST  GH++Y+LG +D++ I+  E+EA +  K SFK+AW+LDKLK ERERG+TI +   KFET +Y  T+IDAPGHRDF+KNMITG SQAD A+L++ +  G FEAG+S +GQTREHA+LA T+G+ Q+I   NKMDAT P +S+ RY++I   +  +LK +GY+  KVPF+P+S + GDN+IERS N+ WY GPTL++ALD++
Sbjct:    1 MSSGKPHLNLVVIGHVDHGKSTLVGHILYRLGLVDQKTIQMLEEEAKKRGKESFKFAWLLDKLKEERERGVTIALTYMKFETRRYIFTIIDAPGHRDFVKNMITGASQADAALLVVSARKGEFEAGMSPEGQTREHAILAKTMGINQLIVAVNKMDATEPPWSQKRYEQIKTILGKFLKSLGYDISKVPFIPVSAWTGDNLIERSPNMPWYNGPTLVEALDSL 223          
BLAST of CB290660 vs. ExPASy Swiss-Prot
Match: EF1A_AERPE (Elongation factor 1-alpha OS=Aeropyrum pernix GN=tuf PE=3 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 2.663e-74
Identity = 124/220 (56.36%), Postives = 169/220 (76.82%), Query Frame = 1
Query:   79 EKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNI 738
            EK H+N+VVIGHVD GKST  GHL+Y+LG I+++ ++  E++A    K SFK+AW+LDK+K ERERGITID+   KFET KY  T+IDAPGHRDF+KNMITG SQAD A+L++ +  G FEAG+S +GQTREH LLA T+G++Q+I   NKMDA    Y + RY+ +V  +  ++K +GY  +K+PF+P+S ++GDN+IERS N+ WY GPTL++ALD +
Sbjct:    3 EKPHMNLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERERGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFEAGMSTEGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMKGLGYQVDKIPFIPVSAWKGDNLIERSPNMPWYNGPTLVEALDQL 222          
BLAST of CB290660 vs. ExPASy Swiss-Prot
Match: EF1A_GIALA (Elongation factor 1-alpha (Fragment) OS=Giardia lamblia GN=TEF1 PE=2 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 5.021e-73
Identity = 133/204 (65.20%), Postives = 159/204 (77.94%), Query Frame = 1
Query:  130 STTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGY-NPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNI 738
            ST TGHLIYK GGID+R I+ +EK A EM K SFKYAWVLD+LK ERERGITI+IALWKFET KY  T+IDAPGHRDFIKNMITGTSQAD A+L++ +  G FEAGISKDGQTREHA LA TLG+K MI C NKMD    KYSK RYDEI  E+   LK +G+   E+  ++P SG+ GDN++E+S  + WY+GP L+DA+D +
Sbjct:    1 STLTGHLIYKCGGIDQRTIDEYEKRATEMGKGSFKYAWVLDQLKDERERGITINIALWKFETKKYIVTIIDAPGHRDFIKNMITGTSQADVAILVVAAGQGEFEAGISKDGQTREHATLANTLGIKTMIICVNKMDDGQVKYSKERYDEIKGEMMKQLKNIGWKKAEEFDYIPTSGWTGDNIMEKSDKMPWYEGPCLIDAIDGL 204          
BLAST of CB290660 vs. ExPASy Swiss-Prot
Match: EF1A_RHYAM (Elongation factor 1-alpha (Fragment) OS=Rhynchosciara americana PE=2 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 8.863e-70
Identity = 127/161 (78.88%), Postives = 142/161 (88.20%), Query Frame = 1
Query:  226 SFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKG 708
            SFKYAWVLDKLKAERERGITIDIALWKFET KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFTLGVKQ+I   NKMD+T P +S+ RY+EI KEVSSY+KK+GYNP  V FVPISG+ GDNM+E S+N+ W KG
Sbjct:    2 SFKYAWVLDKLKAERERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPFSENRYEEIKKEVSSYIKKIGYNPVAVAFVPISGWHGDNMLEPSSNMRWLKG 162          
BLAST of CB290660 vs. ExPASy Swiss-Prot
Match: EF1A_THEPD (Elongation factor 1-alpha OS=Thermofilum pendens (strain Hrk 5) GN=tuf PE=3 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 6.352e-68
Identity = 121/222 (54.50%), Postives = 165/222 (74.32%), Query Frame = 1
Query:   70 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERS-TNLDWYKGPTLLDALD 732
            M ++K H+N+VVIGH+D GKST  G L+Y++G +D R+I+++E+EA +M + ++KYAWVLDKLK ERE+GITID+  +KFET KY+ T+IDAPGHRDF+KNMITG SQAD A+L++ +  G FEAGIS  GQTREH  LA T+GV Q++   NKMD  T  YSK RY+EI  ++   L+ VGY  +++PF+P S +EG N+ +R+     WY GP L +A D
Sbjct:    1 MSEKKPHLNLVVIGHIDHGKSTLMGRLLYEIGAVDPRLIQQYEEEAKKMGRETWKYAWVLDKLKEEREKGITIDLGFYKFETKKYFFTLIDAPGHRDFVKNMITGASQADVALLVVSAKEGEFEAGISPAGQTREHVFLAKTMGVDQLVVAINKMD--TVNYSKERYEEIKNQLIRLLRMVGYKVDEIPFIPTSAWEGVNVSKRTPEKTPWYDGPCLYEAFD 220          
BLAST of CB290660 vs. ExPASy Swiss-Prot
Match: EF1A_THEAC (Elongation factor 1-alpha OS=Thermoplasma acidophilum GN=tuf PE=3 SV=2)

HSP 1 Score: 253.062 bits (645), Expect = 1.198e-66
Identity = 122/221 (55.20%), Postives = 161/221 (72.85%), Query Frame = 1
Query:   70 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALD 732
            M  +K H+N++ IGHVD GKST  G L+Y+ G I   +IE + KEA +  K +F++AWV+D+ K ERERG+TID+A  KFET KYY T+IDAPGHRDF+KNMITGTSQAD A+L+I +  G    G+ +  QTREHA LA TLGV QM+   NKMDAT+P YS+ RY+E+  +    L+ +G+  + + FVPISG++GDN+ + S N+ WYKGPTLL ALD
Sbjct:    1 MASQKPHLNLITIGHVDHGKSTLVGRLLYEHGEIPAHIIEEYRKEAEQKGKATFEFAWVMDRFKEERERGVTIDLAHRKFETDKYYFTLIDAPGHRDFVKNMITGTSQADAAILVISAREG---EGVME--QTREHAFLARTLGVPQMVVAINKMDATSPPYSEKRYNEVKADAEKLLRSIGF--KDISFVPISGYKGDNVTKPSPNMPWYKGPTLLQALD 214          
BLAST of CB290660 vs. ExPASy Swiss-Prot
Match: EF1A_METTP (Elongation factor 1-alpha OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=tuf PE=3 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 2.669e-66
Identity = 117/221 (52.94%), Postives = 156/221 (70.59%), Query Frame = 1
Query:   70 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALD 732
            M   K H+N+  IGHVD GKST  G ++Y++G ID+ +IE++ KEAA   K +F++AWV+D LK ERERG+TIDIA  +F+T KYY TV+D PGHRDF+KNMITG SQAD AVL++ +  G          QT+EH  LA TLGV Q+I   NKMDAT P Y + RY+E+ +EV   L+ VGY  ++VPF+P+S + GDN+++ S    WY GPT+LDAL+
Sbjct:    1 MADTKPHLNLAFIGHVDHGKSTLVGRMMYEMGAIDEHIIEQYRKEAAAKGKATFEFAWVMDSLKEERERGVTIDIAHQRFDTDKYYFTVVDCPGHRDFVKNMITGASQADAAVLVVAAPDGVM-------AQTKEHVFLARTLGVNQLIVAINKMDATEPPYDEKRYNEVKEEVGKLLRMVGYKIDEVPFIPVSAYNGDNVVKHSDRTKWYTGPTVLDALN 214          
BLAST of CB290660 vs. ExPASy Swiss-Prot
Match: EF1A_CENSY (Elongation factor 1-alpha OS=Cenarchaeum symbiosum GN=tuf PE=3 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 5.945e-66
Identity = 119/226 (52.65%), Postives = 164/226 (72.57%), Query Frame = 1
Query:   61 LTAMGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKR-SFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDN 735
            +TA   +K H+N++V GH+D+GKSTT GH +  LG +D+R I +  +E+ +  K  +FKYAWV+D +K ERERGITID+A  KFET KY+ T+IDAPGHRDFIKNMITG S+ADCA+L++ +  G  +  I+  GQ REHA L  TLGV Q+I   NKMD +  KYS+  Y + V++    +K VGY  E VPF+P+SG++GDN+++RS N+ WYKG TLL++ D+
Sbjct:    1 MTAHMADKPHLNMIVTGHIDNGKSTTMGHFLMDLGVVDERTIAQHAEESEKTGKGDTFKYAWVMDNIKDERERGITIDLAFQKFETPKYFFTLIDAPGHRDFIKNMITGASEADCAILVLSAKEGETDTAIAAGGQAREHAFLLKTLGVNQLIVAVNKMDDS--KYSEEAYKKTVEKGEGLVKSVGYKLENVPFIPVSGWKGDNLVKRSENMPWYKGKTLLESFDD 224          
BLAST of CB290660 vs. ExPASy Swiss-Prot
Match: EF1A_PICTO (Elongation factor 1-alpha OS=Picrophilus torridus GN=tuf PE=3 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.730e-65
Identity = 118/221 (53.39%), Postives = 164/221 (74.21%), Query Frame = 1
Query:   70 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALD 732
            M  EK H+N+V+IGHVD GKST  G L+++ G I + +I+ ++KEA E  K +F++AWV+D+ K ERERG+TID+   KFET KYY T+IDAPGHRDF+KNMITGTSQAD AVL++ +  G    G+    QT+EHA LA TLGV Q+I   NKMDAT P YS+ R++E+  E++  L  +G+  + VP +P+SG++GDN+++ S NL W+KGPTL++AL+
Sbjct:    1 MASEKPHMNLVIIGHVDHGKSTLVGRLLFEHGEIPQHIIDEYKKEAEEKGKATFEFAWVMDRFKEERERGVTIDLTHRKFETDKYYFTIIDAPGHRDFVKNMITGTSQADAAVLVVSAREG---EGVM--AQTKEHAFLARTLGVPQLIAVVNKMDATQPPYSEKRFNEVKDEITKLLTPIGF--KNVPIIPLSGYKGDNIMKPSPNLSWWKGPTLMEALN 214          
BLAST of CB290660 vs. ExPASy Swiss-Prot
Match: EF1A_SULSO (Elongation factor 1-alpha OS=Sulfolobus solfataricus GN=tuf PE=1 SV=3)

HSP 1 Score: 248.825 bits (634), Expect = 2.259e-65
Identity = 113/220 (51.36%), Postives = 159/220 (72.27%), Query Frame = 1
Query:   79 EKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNI 738
            +K H+N++VIGH+D GKST  G L+   G ID++ ++  E+ A ++ K S K+A++LD+LK ERERG+TI++   +FET KY+ T+IDAPGHRDF+KNMITG SQAD A+L++ +  G +EAG+S +GQTREH +LA T+G+ Q+I   NKMD T P Y + RY EIV +VS +++  G+N  KV FVP+    GDN+  RS N+ WY GPTL + LD +
Sbjct:    3 QKPHLNLIVIGHIDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPAGDNITHRSENMKWYNGPTLEEYLDQL 222          
The following BLAST results are available for this feature:
BLAST of CB290660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_STAMF3.145e-7556.95Elongation factor 1-alpha OS=Staphylothermus marin... [more]
EF1A_AERPE2.663e-7456.36Elongation factor 1-alpha OS=Aeropyrum pernix GN=t... [more]
EF1A_GIALA5.021e-7365.20Elongation factor 1-alpha (Fragment) OS=Giardia la... [more]
EF1A_RHYAM8.863e-7078.88Elongation factor 1-alpha (Fragment) OS=Rhynchosci... [more]
EF1A_THEPD6.352e-6854.50Elongation factor 1-alpha OS=Thermofilum pendens (... [more]
EF1A_THEAC1.198e-6655.20Elongation factor 1-alpha OS=Thermoplasma acidophi... [more]
EF1A_METTP2.669e-6652.94Elongation factor 1-alpha OS=Methanosaeta thermoph... [more]
EF1A_CENSY5.945e-6652.65Elongation factor 1-alpha OS=Cenarchaeum symbiosum... [more]
EF1A_PICTO1.730e-6553.39Elongation factor 1-alpha OS=Picrophilus torridus ... [more]
EF1A_SULSO2.259e-6551.36Elongation factor 1-alpha OS=Sulfolobus solfataric... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cg11_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cg11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290660 ID=CB290660; Name=CB290660; organism=Citrus sinensis; type=EST; length=741bp
GCCCTATGCTTGCTTGCTCTGCGGCTAGGTTTCAATTGTCTCTTCGAAGT
TTCAGTTAATTTAACAGCCATGGGTAAGGAGAAGACTCACATCAACATTG
TGGTGATTGGCCATGTCGACTCTGGAAAGTCGACCACCACCGGACACTTG
ATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGAGGTTCGAGAA
GGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTACGCCTGGGTGCTCG
ACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGATATTGCCTTG
TGGAAGTTCGAGACCACCAAGTACTACTGCACCGTCATTGATGCTCCCGG
ACATCGTGACTTTATCAAGAACATGATTACCGGTACCTCACAGGCTGACT
GTGCCGTCCTTATCATTGACTCCACCACCGGTGGTTTTGAAGCTGGTATC
TCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTTGCTTTCACCCTTGG
TGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGACGCCACCACCCCCA
AGTACTCAAAGGCTAGGTACGATGAAATTGTGAAGGAGGTCTCTTCCTAC
CTGAAGAAGGTTGGATACAACCCCGAGAAAGTCCCATTCGTGCCCATCTC
TGGTTTCGAGGGTGACAACATGATTGAGAGGTCTACCAACCTTGACTGGT
ACAAGGGTCCAACCCTGCTGGACGCTCTTGACAATATCAAT
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