CB290660

Overview
NameCB290660
Unique NameCB290660
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290660 vs. ExPASy Swiss-Prot
Match: EFTU_RICAE (Elongation factor Tu OS=Rickettsia africae (strain ESF-5) GN=tuf PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.460e-21
Identity = 70/226 (30.97%), Postives = 107/226 (47.35%), Query Frame = 1
Query:   76 KEKTHINIVVIGHVDSGKSTTTGHL---IYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN 735
            + K H+NI  IGHVD GK++ T  +   + K GG      ++                  +D    E+ERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  M+   NK+D           + +  EV   L K G+  +++P +    +   EG    E++ N        L+DA+D+
Sbjct:    8 RTKPHVNIGTIGHVDHGKTSLTAAITIVLAKTGGAQATAYDQ------------------IDAAPEEKERGITISTAHVEYETKNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPAMVVFLNKIDMVD---DPDLLELVEMEVRELLSKYGFPGDEIPIIKGSALQALEGKPEGEKAIN-------ELMDAVDS 198          
BLAST of CB290660 vs. ExPASy Swiss-Prot
Match: EFTU_PICGU (Elongation factor Tu, mitochondrial OS=Pichia guilliermondii GN=TUF1 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.460e-21
Identity = 64/207 (30.92%), Postives = 100/207 (48.31%), Query Frame = 1
Query:   22 RLGFNCLFEVSVNLTAMGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV 642
            R+ F     +  +  A  + K H+NI  IGHVD GK+T T  +                K  +E    +F     +D+   ER RGITI  A  +++T K +   +D PGH D+IKNMITG +Q D A++++ +T G          QTREH LLA  +GV+ ++   NK+D           + +  E+   L + G++ +  P +
Sbjct:   14 RVAFKTRPSLVRSYAAFDRSKPHVNIGTIGHVDHGKTTLTAAIT---------------KVLSEKGGANFLDYGSIDRAPEERARGITISTAHVEYQTDKRHYAHVDCPGHADYIKNMITGAAQMDGAIIVVAATDGQMP-------QTREHLLLARQVGVQHLVVFVNKVDTID---DPEMLELVEMEMRELLSQYGFDGDNTPVI 195          
BLAST of CB290660 vs. ExPASy Swiss-Prot
Match: EFTU_NOCSJ (Elongation factor Tu OS=Nocardioides sp. (strain BAA-499 / JS614) GN=tuf PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.460e-21
Identity = 68/217 (31.34%), Postives = 107/217 (49.31%), Query Frame = 1
Query:   76 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFE--------GDNMIERSTNLDWY 702
            + K H+NI  IGH+D GK+T T         I K + +++       +   F     +DK   ER+RGITI IA  +++T   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L +  +  + +P V ++ F         G++++E    +D Y
Sbjct:    8 RTKPHVNIGTIGHIDHGKTTLTA-------AITKVLHDKYP------DLNPFTPFDEIDKAPEERQRGITISIAHVEYQTESRHYAHVDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPALVVALNKCDMVD---DEELIELVEMEVRELLSEYEFPGDDIPVVRVAAFPALNGDAKWGESVLELMNAVDEY 201          
BLAST of CB290660 vs. ExPASy Swiss-Prot
Match: EFTU_MYCUA (Elongation factor Tu OS=Mycobacterium ulcerans (strain Agy99) GN=tuf PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.460e-21
Identity = 63/156 (40.38%), Postives = 91/156 (58.33%), Query Frame = 1
Query:   76 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK-RSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA 540
            + K H+NI  IGHVD GK+T T         I K + +++     E+N+ R+F     +D    ER+RGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK DA
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AITKVLHDKYP----ELNESRAFDQ---IDNAPEERQRGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKSDA 142          
BLAST of CB290660 vs. ExPASy Swiss-Prot
Match: EFTU_MYCTU (Elongation factor Tu OS=Mycobacterium tuberculosis GN=tuf PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.460e-21
Identity = 63/155 (40.65%), Postives = 89/155 (57.42%), Query Frame = 1
Query:   76 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA 540
            + K H+NI  IGHVD GK+T T         I K + ++F     ++N+   K    +D    ER+RGITI+IA  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK DA
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AITKVLHDKFP----DLNET--KAFDQIDNAPEERQRGITINIAHVEYQTDKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKADA 142          
BLAST of CB290660 vs. ExPASy Swiss-Prot
Match: EFTU_MYCTA (Elongation factor Tu OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=tuf PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.460e-21
Identity = 63/155 (40.65%), Postives = 89/155 (57.42%), Query Frame = 1
Query:   76 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA 540
            + K H+NI  IGHVD GK+T T         I K + ++F     ++N+   K    +D    ER+RGITI+IA  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK DA
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AITKVLHDKFP----DLNET--KAFDQIDNAPEERQRGITINIAHVEYQTDKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKADA 142          
BLAST of CB290660 vs. ExPASy Swiss-Prot
Match: EFTU_MYCMM (Elongation factor Tu OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=tuf PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.460e-21
Identity = 63/156 (40.38%), Postives = 91/156 (58.33%), Query Frame = 1
Query:   76 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK-RSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA 540
            + K H+NI  IGHVD GK+T T         I K + +++     E+N+ R+F     +D    ER+RGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK DA
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AITKVLHDKYP----ELNESRAFDQ---IDNAPEERQRGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKSDA 142          
BLAST of CB290660 vs. ExPASy Swiss-Prot
Match: EFTU_MYCBT (Elongation factor Tu OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=tuf PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.460e-21
Identity = 63/155 (40.65%), Postives = 89/155 (57.42%), Query Frame = 1
Query:   76 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA 540
            + K H+NI  IGHVD GK+T T         I K + ++F     ++N+   K    +D    ER+RGITI+IA  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK DA
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AITKVLHDKFP----DLNET--KAFDQIDNAPEERQRGITINIAHVEYQTDKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKADA 142          
BLAST of CB290660 vs. ExPASy Swiss-Prot
Match: EFTU_MYCBP (Elongation factor Tu OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=tuf PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.460e-21
Identity = 63/155 (40.65%), Postives = 89/155 (57.42%), Query Frame = 1
Query:   76 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA 540
            + K H+NI  IGHVD GK+T T         I K + ++F     ++N+   K    +D    ER+RGITI+IA  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK DA
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AITKVLHDKFP----DLNET--KAFDQIDNAPEERQRGITINIAHVEYQTDKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKADA 142          
BLAST of CB290660 vs. ExPASy Swiss-Prot
Match: EFTU_MYCBO (Elongation factor Tu OS=Mycobacterium bovis GN=tuf PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.460e-21
Identity = 63/155 (40.65%), Postives = 89/155 (57.42%), Query Frame = 1
Query:   76 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA 540
            + K H+NI  IGHVD GK+T T         I K + ++F     ++N+   K    +D    ER+RGITI+IA  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK DA
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AITKVLHDKFP----DLNET--KAFDQIDNAPEERQRGITINIAHVEYQTDKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKADA 142          
The following BLAST results are available for this feature:
BLAST of CB290660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_RICAE4.460e-2130.97Elongation factor Tu OS=Rickettsia africae (strain... [more]
EFTU_PICGU4.460e-2130.92Elongation factor Tu, mitochondrial OS=Pichia guil... [more]
EFTU_NOCSJ4.460e-2131.34Elongation factor Tu OS=Nocardioides sp. (strain B... [more]
EFTU_MYCUA4.460e-2140.38Elongation factor Tu OS=Mycobacterium ulcerans (st... [more]
EFTU_MYCTU4.460e-2140.65Elongation factor Tu OS=Mycobacterium tuberculosis... [more]
EFTU_MYCTA4.460e-2140.65Elongation factor Tu OS=Mycobacterium tuberculosis... [more]
EFTU_MYCMM4.460e-2140.38Elongation factor Tu OS=Mycobacterium marinum (str... [more]
EFTU_MYCBT4.460e-2140.65Elongation factor Tu OS=Mycobacterium bovis (strai... [more]
EFTU_MYCBP4.460e-2140.65Elongation factor Tu OS=Mycobacterium bovis (strai... [more]
EFTU_MYCBO4.460e-2140.65Elongation factor Tu OS=Mycobacterium bovis GN=tuf... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cg11_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cg11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290660 ID=CB290660; Name=CB290660; organism=Citrus sinensis; type=EST; length=741bp
GCCCTATGCTTGCTTGCTCTGCGGCTAGGTTTCAATTGTCTCTTCGAAGT
TTCAGTTAATTTAACAGCCATGGGTAAGGAGAAGACTCACATCAACATTG
TGGTGATTGGCCATGTCGACTCTGGAAAGTCGACCACCACCGGACACTTG
ATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGAGGTTCGAGAA
GGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTACGCCTGGGTGCTCG
ACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGATATTGCCTTG
TGGAAGTTCGAGACCACCAAGTACTACTGCACCGTCATTGATGCTCCCGG
ACATCGTGACTTTATCAAGAACATGATTACCGGTACCTCACAGGCTGACT
GTGCCGTCCTTATCATTGACTCCACCACCGGTGGTTTTGAAGCTGGTATC
TCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTTGCTTTCACCCTTGG
TGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGACGCCACCACCCCCA
AGTACTCAAAGGCTAGGTACGATGAAATTGTGAAGGAGGTCTCTTCCTAC
CTGAAGAAGGTTGGATACAACCCCGAGAAAGTCCCATTCGTGCCCATCTC
TGGTTTCGAGGGTGACAACATGATTGAGAGGTCTACCAACCTTGACTGGT
ACAAGGGTCCAACCCTGCTGGACGCTCTTGACAATATCAAT
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