CB290757

Overview
NameCB290757
Unique NameCB290757
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_CALMQ (3-isopropylmalate dehydratase large subunit OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=leuC PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.398e-30
Identity = 80/202 (39.60%), Postives = 118/202 (58.42%), Query Frame = -2
Query:  267 DGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFL 872
            D  T  YL     +  +P+  D  A ++ EY  +++KLEPLVA PHS DN     E + +++D V+IGSCT G+  D  AAA++ L +G KVK    ++PA++    D++T  +     +T +    +AGC      +CG CLGG    +  +      VST +RNF GRMG  EG++YLA+  TAAA+AL G +TDPR++L
Sbjct:  228 DEETVSYLSRSRGINVKPITPDPDAKYVDEYTIELNKLEPLVAAPHSVDNVKPVSEVEGIEVDYVFIGSCTNGRLSDLEAAARI-LKNG-KVKARCIVIPASR----DLFTKALDAGYVETLT----KAGC-VVTYGTCGPCLGG---HFGVIGPGETAVSTGSRNFKGRMGSPEGKVYLANAATAAATALEGRLTDPRKYL 415          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC2_RUBXD (3-isopropylmalate dehydratase large subunit 2 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=leuC2 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.826e-30
Identity = 74/200 (37.00%), Postives = 109/200 (54.50%), Query Frame = -2
Query:  279 PADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDP 878
            PAD  T +YL+ +    + P  SD  AS++ + + D++ LEPLVA PHSP N     E +  KID+VYIG+C+ G   D    A++   +     V   +VPA+QKV+    +        +    +F EAG    ++P+CGAC GG     A   E    ++TTNRNF GRMG    ++ LA+ Y AAA+A+ G + +P
Sbjct:  228 PADEVTARYLDRRADREWHPERSDPDASYVRKVKIDLNSLEPLVALPHSPGNVVAVSEARGTKIDQVYIGNCSNGTITDLRQTAEILRGNRVHPDVRAIIVPASQKVYRQAIS--------EGLIDVFVEAGA-VVSTPTCGACFGGHMGVLA---EGERAITTTNRNFKGRMGSPLAEVCLANAYVAAAAAVAGEIVEP 415          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_MOOTA (3-isopropylmalate dehydratase large subunit OS=Moorella thermoacetica (strain ATCC 39073) GN=leuC PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.384e-30
Identity = 75/205 (36.59%), Postives = 108/205 (52.68%), Query Frame = -2
Query:  264 PADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFLE 878
            P D  T +Y+  +    Y    SD  A +  E   D SK+EP VA PH P+N    +E  ++KID+V IGSCT G+ ED   AA++        +V   ++P TQ+++          +  +     F EAG    ++P+CG CLGG     A+       ++TTNRNF GRMGH E ++YLA P  AAASA+ G +  P E ++
Sbjct:  229 PVDEKTVEYIRGRLQRDYRIYQSDPDARYNQEIDIDASKIEPQVALPHLPENARSVKEIGEIKIDQVVIGSCTNGRLEDLRVAAQILKGQKVHPEVRLIVIPGTQQIY--------AAALAEGLIATFIEAGA-AVSTPTCGPCLGGHMGILAKGER---ALATTNRNFVGRMGHPESEVYLAGPAVAAASAVKGRIAAPEEVVK 421          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_UNCTG (3-isopropylmalate dehydratase large subunit OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=leuC PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.067e-30
Identity = 80/202 (39.60%), Postives = 107/202 (52.97%), Query Frame = -2
Query:  273 DGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKV--KVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPRE 872
            D  T  Y+  +    Y+   SD+ A +L  Y  D SK+ P V+ P  P N    ++ K   ID+V IGSCT G+ ED   AA + +  GKKV   V T ++PAT +V+             +   +IF +AG    A P+CG CLGG     A   +   C STTNRNF GRMGH E Q++L +P  AAASA+ GY+  P E
Sbjct:  231 DEITENYVAKRAQRKYKFYISDKDAKYLKIYEIDCSKILPQVSMPFLPSNTKAVKDIKKTYIDQVVIGSCTNGRIEDLRVAASI-IKKGKKVNSNVRTLIIPATPEVYSQAL--------DEGLLRIFMDAGAIISA-PTCGPCLGGHMGILASGEK---CASTTNRNFRGRMGHVESQLFLVNPAVAAASAIKGYIASPDE 419          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_SULAC (3-isopropylmalate dehydratase large subunit OS=Sulfolobus acidocaldarius GN=leuC PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.067e-30
Identity = 80/201 (39.80%), Postives = 110/201 (54.73%), Query Frame = -2
Query:  276 DGTTFKYLEDKTSLPYEP--VYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPR 872
            D  TF Y+  KT+  YEP  V  D  A ++ EY  D+SKL+PLVA PHS DN     E +   +D+V+IGSCT G+  D   AAK+    GKKVK  T ++PA+ +++     L           Q   +AG       +CG CLGG    +         +ST++RNF GRMG  + ++YL+ P  AAA+AL G +TDPR
Sbjct:  228 DQETFNYI--KTARGYEPQMVTPDSDAKYVDEYNIDLSKLDPLVAAPHSVDNVKSVNEVEGTPVDQVFIGSCTNGRISDLEMAAKIL--KGKKVKTRTIVIPASYQLFKKALELGY--------VQTLADAGAIITYG-TCGPCLGG---HFGIAGPGETIISTSSRNFKGRMGSPDAKVYLSGPAVAAATALEGKITDPR 412          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_PYRAR (3-isopropylmalate dehydratase large subunit OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=leuC PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.312e-30
Identity = 76/203 (37.44%), Postives = 112/203 (55.17%), Query Frame = -2
Query:  264 DGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFLE 872
            D  T +YL+    + Y P  S E  ++  +Y  ++ +LEPLVA PHS DN    RE + V++D+V+IGSCT G+  D   AA++    G++VK     +PA+ +V+     L            +  EAGC      +CG CLGG    +       V ++T+NRNF GR+GH E +IYLA+P  AAA+A  G + DPR +L+
Sbjct:  227 DAVTAEYLKTARGVDYTPP-SLEPGNYADKYTVELGRLEPLVAAPHSVDNVKTVREVEGVEVDQVFIGSCTNGRLRDIATAARIL--KGRRVKTRCIAIPASYEVFKTAMKLGY--------IDVLTEAGC-VVTYGTCGPCLGG---HFGVAGPGEVHLTTSNRNFKGRVGHPEAKIYLANPAVAAATAAEGRIADPRPYLK 414          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC1_PYRFU (3-isopropylmalate dehydratase large subunit 1 OS=Pyrococcus furiosus GN=leuC1 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.183e-29
Identity = 81/210 (38.57%), Postives = 115/210 (54.76%), Query Frame = -2
Query:  264 VPADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRA-LARECK-DVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFLE 881
            +  D  T +Y++ +    Y+   SDE A +     +D+SK+EP VA PH P+N   +++  K ++KID+V IGSCT G+ ED   AA+V    G+KV   V   ++P +  V+             +   +IF EAG      P+CG CLGG     A        VSTTNRNF GRMGH + ++YLASPY AAASA+ G +  P E ++
Sbjct:  229 IEPDKKTIEYVKGRAKREYKIYKSDEDAKYYKVIEYDVSKIEPQVAFPHLPENTVPISKAAKMNIKIDQVVIGSCTNGRLEDLRMAAEVL--EGQKVAPWVRLIILPCSPTVYFKAMK--------EGLLEIFLEAGA-VIGPPTCGPCLGGHMGILASGER---AVSTTNRNFVGRMGHPKSEVYLASPYVAAASAILGRIASPEEVVK 424          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_CLOAB (3-isopropylmalate dehydratase large subunit OS=Clostridium acetobutylicum GN=leuC PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.545e-29
Identity = 76/206 (36.89%), Postives = 111/206 (53.88%), Query Frame = -2
Query:  267 PADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFL 878
            P D  T +Y++ ++    +   +DE A +      D+S L+P VA PH P+N     +  +V +D+V IGSCT G+ ED   AA +    GKK+K  +   + P TQ ++++           +   + F EAG    ++P+CG CLGG     A   E    +STTNRNF GRMGH + ++YLASP  AAASA+ G +  P E L
Sbjct:  231 PVDEKTIEYMKGRSDRELKKFDADEDAEYSRVIEIDLSTLKPTVAFPHLPENTKTIDQVGEVNVDQVVIGSCTNGRMEDLRIAASIL--KGKKIKKGIRLIVFPGTQNIYLEAME--------EGLVRTFIEAG-GIVSTPTCGPCLGGHMGILA---EGERAISTTNRNFVGRMGHPKSEVYLASPAVAAASAIAGKIVSPEEVL 422          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_CAMFF (3-isopropylmalate dehydratase large subunit OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=leuC PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.545e-29
Identity = 85/208 (40.87%), Postives = 117/208 (56.25%), Query Frame = -2
Query:  276 VPADGTTFKYLEDKTSLPYEPV--YSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALAREC--KDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLV--PATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPR 881
            +  D  T ++LE K +L  +P   YSDE A++    R D+SKL+P++A P  P N     E    D+KID+V+IGSCT G+  D   AA++    GK+V   T L+  PATQK+ +         +  +    IF EAG    ++P+CGACLGG             CVSTTNRNF GRMG +  ++YLA+   AAASA+ G + DPR
Sbjct:  227 IAVDDITKEFLESK-NLRSKPKFHYSDEGANYEQVLRIDVSKLDPVIAYPFLPSNGKSINEALKDDLKIDQVFIGSCTNGRLSDLRIAARIL--KGKRVAKHTRLIITPATQKIAL--------AAQKEGLMDIFVEAGA-VVSNPTCGACLGGYMGILGAGER---CVSTTNRNFVGRMGDRTSEVYLANSAVAAASAIAGKIADPR 419          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_ARCB4 (3-isopropylmalate dehydratase large subunit OS=Arcobacter butzleri (strain RM4018) GN=leuC PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.545e-29
Identity = 73/182 (40.11%), Postives = 107/182 (58.79%), Query Frame = -2
Query:  276 YSDEKASFLSEYRFDISKLEPLVAKPHSPDN-RALARECKD-VKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPR 815
            YSDE A++      D++KLEP++A P+ P N  ++++   D +K+D+V+IGSCT G+  DF  AA++         V   L P TQK+  +   L    +          +AG    ++P+CGACLGG       + +  VC+STTNRNF GRMG +  +IYLA+   AAASA++GY+TDPR
Sbjct:  255 YSDEDANYCQVIEIDVAKLEPVIAYPYLPSNGHSVSQAVSDNIKVDQVFIGSCTNGRLSDFKIAAEILAGQKVARHVRLILTPGTQKILREATKLGYIDT--------LVDAGA-VVSNPTCGACLGGYMGI---LGDNEVCISTTNRNFVGRMGSRSSKIYLANSAVAAASAISGYITDPR 424          
The following BLAST results are available for this feature:
BLAST of CB290757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LEUC_CALMQ1.398e-3039.603-isopropylmalate dehydratase large subunit OS=Cal... [more]
LEUC2_RUBXD1.826e-3037.003-isopropylmalate dehydratase large subunit 2 OS=R... [more]
LEUC_MOOTA2.384e-3036.593-isopropylmalate dehydratase large subunit OS=Moo... [more]
LEUC_UNCTG4.067e-3039.603-isopropylmalate dehydratase large subunit OS=Unc... [more]
LEUC_SULAC4.067e-3039.803-isopropylmalate dehydratase large subunit OS=Sul... [more]
LEUC_PYRAR5.312e-3037.443-isopropylmalate dehydratase large subunit OS=Pyr... [more]
LEUC1_PYRFU1.183e-2938.573-isopropylmalate dehydratase large subunit 1 OS=P... [more]
LEUC_CLOAB1.545e-2936.893-isopropylmalate dehydratase large subunit OS=Clo... [more]
LEUC_CAMFF1.545e-2940.873-isopropylmalate dehydratase large subunit OS=Cam... [more]
LEUC_ARCB41.545e-2940.113-isopropylmalate dehydratase large subunit OS=Arc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01dd06_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dd06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290757 ID=CB290757; Name=CB290757; organism=Citrus sinensis; type=EST; length=882bp
TTTTTTTTTTTTTTTTTAATTTTTTCTCTTATAAATTTTATGCTATTTAT
TGTACTAATTATTGTACATACCTCATTATTCCTATTTTATTAGTACAAAA
TTAACAGTCACAATGTGTCATAACATACAAAATATGCTTGAAGAAGCAAG
GGAAAACAGTTCTTCAGATCTAAGTCACATCCACATAGCCCTTGTCCCTC
GGCAAGAAGAATATGATATCACATAGTGTACATACGTGATCGATTCAGTA
TTTGATCAGTCTACTCCAAGAACTCCCTTGGATCAGTGACATAACCAGTC
AAAGCAGATGCTGCAGCTGTGTATGGAGAAGCAAGATATATTTGGCCTTC
CTTGTGTCCCATCCGTCCAGGGAAGTTCCTATTTGTCGTGGAGACACAGA
CCATAGGTTCATTCATGCGTGCATAAGTGTCTTTAGGGCCACCCAAACAA
GCACCGCAACTAGGACTCGCAGGTGTGTCGCAACCAGCTTCTTCAAATAT
CTGAGAGCAAGTCTTGCCACCAGATCCTGGTACTGGAAGAGTGTATACGT
CCATCCATACCTTTTGGGTAGCAGGGACAAGAAATGTTGGAACTTTGACC
TTTTTGCCTGAAGCTAAGAAGACTTTCGCTGCAGCAAGAAAGTCTTCTGT
TTTTCCACCAGTGCAAGATCCAATGTATACTCTGTCAATTTTTACATCTT
TGCACTCTCTTGCTAAAGCCCGATTGTCAGGAGAATGAGGCTTTGCCACC
AGTGGCTCCAGCTTCGAGATATCAAATCTGTATTCGGACAGGAAACTTGC
TTTCTCATCACTATAAACTGGTTCATAGGGCAACGATGTCTTATCCTCAA
GATATTTAAATGTTGTACCATCAGCAGGGACT
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