CB290757

Overview
NameCB290757
Unique NameCB290757
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_BURP6 (3-isopropylmalate dehydratase large subunit OS=Burkholderia pseudomallei (strain 668) GN=leuC PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.028e-13
Identity = 72/251 (28.69%), Postives = 104/251 (41.43%), Query Frame = -2
Query:  276 VPADGTTFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPD------------------------NRALA-------RECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSG-------GKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPR 881
            V  D TT +YL+ +  +P           ++   SDE A F      D +++ P V    SP+                         RALA          + +K+D+++IGSCT  + ED  AAA V     ++V     L             + VPGSG        +   ++F EAG +    P C  CL    D   R+     C ST+NRNF GR G + G+ +L SP  AAA+A+ G+  D R
Sbjct:  233 VAVDDTTVEYLKGRPFVPTGAEWDQAVEYWKTFRSDEGAQFDRVVELDAAQIVPQVTWGTSPEMVTSIDGRVPDPEREKDPVKRDAMERALAYMALAPNTPIEAIKVDKIFIGSCTNARIEDIRAAAYVVKKLNRRVAPNVRL------------AMVVPGSGLVKAQAEREGLDKVFTEAGFEW-REPGCSMCLAMNAD---RLEPGERCASTSNRNFEGRQG-QGGRTHLVSPAMAAAAAIEGHFVDIR 466          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_BURP1 (3-isopropylmalate dehydratase large subunit OS=Burkholderia pseudomallei (strain 1710b) GN=leuC PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 2.028e-13
Identity = 72/251 (28.69%), Postives = 104/251 (41.43%), Query Frame = -2
Query:  276 VPADGTTFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPD------------------------NRALA-------RECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSG-------GKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPR 881
            V  D TT +YL+ +  +P           ++   SDE A F      D +++ P V    SP+                         RALA          + +K+D+++IGSCT  + ED  AAA V     ++V     L             + VPGSG        +   ++F EAG +    P C  CL    D   R+     C ST+NRNF GR G + G+ +L SP  AAA+A+ G+  D R
Sbjct:  233 VAVDDTTVEYLKGRPFVPTGAEWDQAVEYWKTFRSDEGAQFDRVVELDAAQIVPQVTWGTSPEMVTSIDGRVPDPEREKDPVKRDAMERALAYMALAPNTPIEAIKVDKIFIGSCTNARIEDIRAAAYVVKKLNRRVAPNVRL------------AMVVPGSGLVKAQAEREGLDKVFTEAGFEW-REPGCSMCLAMNAD---RLEPGERCASTSNRNFEGRQG-QGGRTHLVSPAMAAAAAIEGHFVDIR 466          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_BURP0 (3-isopropylmalate dehydratase large subunit OS=Burkholderia pseudomallei (strain 1106a) GN=leuC PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.028e-13
Identity = 72/251 (28.69%), Postives = 104/251 (41.43%), Query Frame = -2
Query:  276 VPADGTTFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPD------------------------NRALA-------RECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSG-------GKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPR 881
            V  D TT +YL+ +  +P           ++   SDE A F      D +++ P V    SP+                         RALA          + +K+D+++IGSCT  + ED  AAA V     ++V     L             + VPGSG        +   ++F EAG +    P C  CL    D   R+     C ST+NRNF GR G + G+ +L SP  AAA+A+ G+  D R
Sbjct:  233 VAVDDTTVEYLKGRPFVPTGAEWDQAVEYWKTFRSDEGAQFDRVVELDAAQIVPQVTWGTSPEMVTSIDGRVPDPEREKDPVKRDAMERALAYMALAPNTPIEAIKVDKIFIGSCTNARIEDIRAAAYVVKKLNRRVAPNVRL------------AMVVPGSGLVKAQAEREGLDKVFTEAGFEW-REPGCSMCLAMNAD---RLEPGERCASTSNRNFEGRQG-QGGRTHLVSPAMAAAAAIEGHFVDIR 466          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_BURMS (3-isopropylmalate dehydratase large subunit OS=Burkholderia mallei (strain SAVP1) GN=leuC PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.028e-13
Identity = 72/251 (28.69%), Postives = 104/251 (41.43%), Query Frame = -2
Query:  276 VPADGTTFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPD------------------------NRALA-------RECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSG-------GKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPR 881
            V  D TT +YL+ +  +P           ++   SDE A F      D +++ P V    SP+                         RALA          + +K+D+++IGSCT  + ED  AAA V     ++V     L             + VPGSG        +   ++F EAG +    P C  CL    D   R+     C ST+NRNF GR G + G+ +L SP  AAA+A+ G+  D R
Sbjct:  233 VAVDDTTVEYLKGRPFVPTGAEWDQAVEYWKTFRSDEGAQFDRVVELDAAQIVPQVTWGTSPEMVTSIDGRVPDPEREKDPVKRDAMERALAYMALAPNTPIEAIKVDKIFIGSCTNARIEDIRAAAYVVKKLNRRVAPNVRL------------AMVVPGSGLVKAQAEREGLDKVFTEAGFEW-REPGCSMCLAMNAD---RLEPGERCASTSNRNFEGRQG-QGGRTHLVSPAMAAAAAIEGHFVDIR 466          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_BURMA (3-isopropylmalate dehydratase large subunit OS=Burkholderia mallei GN=leuC PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.028e-13
Identity = 72/251 (28.69%), Postives = 104/251 (41.43%), Query Frame = -2
Query:  276 VPADGTTFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPD------------------------NRALA-------RECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSG-------GKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPR 881
            V  D TT +YL+ +  +P           ++   SDE A F      D +++ P V    SP+                         RALA          + +K+D+++IGSCT  + ED  AAA V     ++V     L             + VPGSG        +   ++F EAG +    P C  CL    D   R+     C ST+NRNF GR G + G+ +L SP  AAA+A+ G+  D R
Sbjct:  233 VAVDDTTVEYLKGRPFVPTGAEWDQAVEYWKTFRSDEGAQFDRVVELDAAQIVPQVTWGTSPEMVTSIDGRVPDPEREKDPVKRDAMERALAYMALAPNTPIEAIKVDKIFIGSCTNARIEDIRAAAYVVKKLNRRVAPNVRL------------AMVVPGSGLVKAQAEREGLDKVFTEAGFEW-REPGCSMCLAMNAD---RLEPGERCASTSNRNFEGRQG-QGGRTHLVSPAMAAAAAIEGHFVDIR 466          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_BURM9 (3-isopropylmalate dehydratase large subunit OS=Burkholderia mallei (strain NCTC 10229) GN=leuC PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.028e-13
Identity = 72/251 (28.69%), Postives = 104/251 (41.43%), Query Frame = -2
Query:  276 VPADGTTFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPD------------------------NRALA-------RECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSG-------GKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPR 881
            V  D TT +YL+ +  +P           ++   SDE A F      D +++ P V    SP+                         RALA          + +K+D+++IGSCT  + ED  AAA V     ++V     L             + VPGSG        +   ++F EAG +    P C  CL    D   R+     C ST+NRNF GR G + G+ +L SP  AAA+A+ G+  D R
Sbjct:  233 VAVDDTTVEYLKGRPFVPTGAEWDQAVEYWKTFRSDEGAQFDRVVELDAAQIVPQVTWGTSPEMVTSIDGRVPDPEREKDPVKRDAMERALAYMALAPNTPIEAIKVDKIFIGSCTNARIEDIRAAAYVVKKLNRRVAPNVRL------------AMVVPGSGLVKAQAEREGLDKVFTEAGFEW-REPGCSMCLAMNAD---RLEPGERCASTSNRNFEGRQG-QGGRTHLVSPAMAAAAAIEGHFVDIR 466          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_BURM7 (3-isopropylmalate dehydratase large subunit OS=Burkholderia mallei (strain NCTC 10247) GN=leuC PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.028e-13
Identity = 72/251 (28.69%), Postives = 104/251 (41.43%), Query Frame = -2
Query:  276 VPADGTTFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPD------------------------NRALA-------RECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSG-------GKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPR 881
            V  D TT +YL+ +  +P           ++   SDE A F      D +++ P V    SP+                         RALA          + +K+D+++IGSCT  + ED  AAA V     ++V     L             + VPGSG        +   ++F EAG +    P C  CL    D   R+     C ST+NRNF GR G + G+ +L SP  AAA+A+ G+  D R
Sbjct:  233 VAVDDTTVEYLKGRPFVPTGAEWDQAVEYWKTFRSDEGAQFDRVVELDAAQIVPQVTWGTSPEMVTSIDGRVPDPEREKDPVKRDAMERALAYMALAPNTPIEAIKVDKIFIGSCTNARIEDIRAAAYVVKKLNRRVAPNVRL------------AMVVPGSGLVKAQAEREGLDKVFTEAGFEW-REPGCSMCLAMNAD---RLEPGERCASTSNRNFEGRQG-QGGRTHLVSPAMAAAAAIEGHFVDIR 466          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_BACC1 (3-isopropylmalate dehydratase large subunit OS=Bacillus cereus (strain ATCC 10987) GN=leuC PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.028e-13
Identity = 66/211 (31.28%), Postives = 94/211 (44.55%), Query Frame = -2
Query:  273 YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSP-----------------DNRALA-------RECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPRE 827
            +  +Y+D  A +      D++ L P V    +P                 D RA +       +   D+ +  V+IGSCT  +  D   AA V    G+KVK  V   +VP +++V           +  K    IFEEAG +    P C  CLG   D   ++ E   C ST+NRNF GR G K  + +L SP  AAA+AL G+  D R+
Sbjct:  259 WSELYTDADAMYDLHISIDVTDLAPYVTWGTNPSMGVRIDEKLPEKHDVNDERAFSYMGLSPGQSTYDIPVQHVFIGSCTNSRLSDLEIAASV--VKGRKVKEGVRALVVPGSKRV--------RDAAMQKGLHHIFEEAGFEW-REPGCSMCLGMNPD---QVPEGEHCASTSNRNFEGRQG-KGARTHLVSPAMAAAAALYGHFVDIRK 454          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_ASHGO (3-isopropylmalate dehydratase OS=Ashbya gossypii GN=LEU1 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.028e-13
Identity = 57/157 (36.31%), Postives = 77/157 (49.04%), Query Frame = -2
Query:  270 KDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSG-------GKTCSQIFEEAGCDTPASPSCGACLG------GPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREF 701
            KD+KID+V+IGSCT  + ED  AAA V    G ++       P  ++       + VPGSG        +   +IFE AG +      C  CLG      GPK+          C ST+NRNF GR G +  + +L SP  AAA+ + G+  D REF
Sbjct:  345 KDIKIDKVFIGSCTNARIEDLRAAAAV--VDGHRI------APTVKR------AMVVPGSGLVKKQAEAEGLDKIFEAAGFEW-REAGCSMCLGMNPDILGPKER---------CASTSNRNFEGRQG-RLSRTHLMSPAMAAAAGIMGHFVDIREF 476          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_ALHEH (3-isopropylmalate dehydratase large subunit OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=leuC PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.028e-13
Identity = 56/153 (36.60%), Postives = 78/153 (50.98%), Query Frame = -2
Query:  264 KDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSG-------GKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFLE 701
            K++++DRV+IGSCT  + ED  AAA+V     +  KV   L  A          L VPGSG        +   ++F EAG +    P C  CL    D   R+     C ST+NRNF GR G + G+ +L +P  AAA+A+ G+  D R + E
Sbjct:  336 KEIRLDRVFIGSCTNSRIEDLRAAAEVV----RGHKVADSLTQA----------LVVPGSGVVKEQAEKEGLDRVFIEAGFEW-REPGCSMCLAMNAD---RLQSGERCASTSNRNFEGRQG-QGGRTHLVNPAMAAAAAIAGHFVDVRHWPE 469          
The following BLAST results are available for this feature:
BLAST of CB290757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LEUC_BURP62.028e-1328.693-isopropylmalate dehydratase large subunit OS=Bur... [more]
LEUC_BURP12.028e-1328.693-isopropylmalate dehydratase large subunit OS=Bur... [more]
LEUC_BURP02.028e-1328.693-isopropylmalate dehydratase large subunit OS=Bur... [more]
LEUC_BURMS2.028e-1328.693-isopropylmalate dehydratase large subunit OS=Bur... [more]
LEUC_BURMA2.028e-1328.693-isopropylmalate dehydratase large subunit OS=Bur... [more]
LEUC_BURM92.028e-1328.693-isopropylmalate dehydratase large subunit OS=Bur... [more]
LEUC_BURM72.028e-1328.693-isopropylmalate dehydratase large subunit OS=Bur... [more]
LEUC_BACC12.028e-1331.283-isopropylmalate dehydratase large subunit OS=Bac... [more]
LEUC_ASHGO2.028e-1336.313-isopropylmalate dehydratase OS=Ashbya gossypii G... [more]
LEUC_ALHEH2.028e-1336.603-isopropylmalate dehydratase large subunit OS=Alk... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01dd06_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dd06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290757 ID=CB290757; Name=CB290757; organism=Citrus sinensis; type=EST; length=882bp
TTTTTTTTTTTTTTTTTAATTTTTTCTCTTATAAATTTTATGCTATTTAT
TGTACTAATTATTGTACATACCTCATTATTCCTATTTTATTAGTACAAAA
TTAACAGTCACAATGTGTCATAACATACAAAATATGCTTGAAGAAGCAAG
GGAAAACAGTTCTTCAGATCTAAGTCACATCCACATAGCCCTTGTCCCTC
GGCAAGAAGAATATGATATCACATAGTGTACATACGTGATCGATTCAGTA
TTTGATCAGTCTACTCCAAGAACTCCCTTGGATCAGTGACATAACCAGTC
AAAGCAGATGCTGCAGCTGTGTATGGAGAAGCAAGATATATTTGGCCTTC
CTTGTGTCCCATCCGTCCAGGGAAGTTCCTATTTGTCGTGGAGACACAGA
CCATAGGTTCATTCATGCGTGCATAAGTGTCTTTAGGGCCACCCAAACAA
GCACCGCAACTAGGACTCGCAGGTGTGTCGCAACCAGCTTCTTCAAATAT
CTGAGAGCAAGTCTTGCCACCAGATCCTGGTACTGGAAGAGTGTATACGT
CCATCCATACCTTTTGGGTAGCAGGGACAAGAAATGTTGGAACTTTGACC
TTTTTGCCTGAAGCTAAGAAGACTTTCGCTGCAGCAAGAAAGTCTTCTGT
TTTTCCACCAGTGCAAGATCCAATGTATACTCTGTCAATTTTTACATCTT
TGCACTCTCTTGCTAAAGCCCGATTGTCAGGAGAATGAGGCTTTGCCACC
AGTGGCTCCAGCTTCGAGATATCAAATCTGTATTCGGACAGGAAACTTGC
TTTCTCATCACTATAAACTGGTTCATAGGGCAACGATGTCTTATCCTCAA
GATATTTAAATGTTGTACCATCAGCAGGGACT
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