CB290757

Overview
NameCB290757
Unique NameCB290757
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_XYLFA (3-isopropylmalate dehydratase large subunit OS=Xylella fastidiosa GN=leuC PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.459e-13
Identity = 57/150 (38.00%), Postives = 77/150 (51.33%), Query Frame = -2
Query:  267 VKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSG-------GKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFL 695
            +K+DRV+IGSCT  + ED  AAA+V    G+K       V +T K       + VPGSG        +   +IF EAG +    P C  CL    D   ++     C ST+NRNF GR G   G+ +L SP  AAA+A+ G+  D RE +
Sbjct:  343 IKLDRVFIGSCTNSRIEDLRAAAEV--VKGRK-------VASTVK-----QAMVVPGSGLVKAQAEVEGLDKIFIEAGFEW-REPGCSMCLAMNPD---KLGSGEHCASTSNRNFEGRQG-IGGRTHLVSPAMAAAAAVAGHFVDVREMM 473          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_XYLF2 (3-isopropylmalate dehydratase large subunit OS=Xylella fastidiosa (strain M23) GN=leuC PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.459e-13
Identity = 57/150 (38.00%), Postives = 77/150 (51.33%), Query Frame = -2
Query:  267 VKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSG-------GKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFL 695
            +K+DRV+IGSCT  + ED  AAA+V    G+K       V +T K       + VPGSG        +   +IF EAG +    P C  CL    D   ++     C ST+NRNF GR G   G+ +L SP  AAA+A+ G+  D RE +
Sbjct:  343 IKLDRVFIGSCTNSRIEDLRAAAEV--VKGRK-------VASTVK-----QAMVVPGSGLVKAQAEVEGLDKIFIEAGFEW-REPGCSMCLAMNPD---KLGSGEHCASTSNRNFEGRQG-IGGRTHLVSPAMAAAAAVAGHFVDVREMM 473          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_XANCP (3-isopropylmalate dehydratase large subunit OS=Xanthomonas campestris pv. campestris GN=leuC PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.459e-13
Identity = 57/149 (38.26%), Postives = 77/149 (51.68%), Query Frame = -2
Query:  273 DVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSG-------GKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPRE 698
            ++ +DRV+IGSCT  + ED  AAA V  A G+K       V +T K       L VPGSG        +   +IF +AG +    P C  CL    D   ++     C ST+NRNF GR G   G+ +L SP  AAA+A++G+  D RE
Sbjct:  342 EIHLDRVFIGSCTNSRIEDLRAAAAV--AKGRK-------VASTIK-----QALVVPGSGLVKAQAEAEGLDKIFLDAGFEW-REPGCSMCLAMNPD---KLGSGEHCASTSNRNFEGRQG-AGGRTHLVSPAMAAAAAVSGHFVDVRE 471          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_XANC8 (3-isopropylmalate dehydratase large subunit OS=Xanthomonas campestris pv. campestris (strain 8004) GN=leuC PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.459e-13
Identity = 57/149 (38.26%), Postives = 77/149 (51.68%), Query Frame = -2
Query:  273 DVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSG-------GKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPRE 698
            ++ +DRV+IGSCT  + ED  AAA V  A G+K       V +T K       L VPGSG        +   +IF +AG +    P C  CL    D   ++     C ST+NRNF GR G   G+ +L SP  AAA+A++G+  D RE
Sbjct:  342 EIHLDRVFIGSCTNSRIEDLRAAAAV--AKGRK-------VASTIK-----QALVVPGSGLVKAQAEAEGLDKIFLDAGFEW-REPGCSMCLAMNPD---KLGSGEHCASTSNRNFEGRQG-AGGRTHLVSPAMAAAAAVSGHFVDVRE 471          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_XANC5 (3-isopropylmalate dehydratase large subunit OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=leuC PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.459e-13
Identity = 56/148 (37.84%), Postives = 77/148 (52.03%), Query Frame = -2
Query:  273 VKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSG-------GKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPRE 695
            +++DRV+IGSCT  + ED  AAA V  A G+K       V +T K       L VPGSG        +   ++F +AG +    P C  CL    D   ++     C ST+NRNF GR G   G+ +L SP  AAA+A++G+  D RE
Sbjct:  343 IRLDRVFIGSCTNSRIEDLRAAAAV--AKGRK-------VASTIK-----QALVVPGSGLVKAQAEAEGLDKVFLDAGFEW-REPGCSMCLAMNPD---KLGSGEHCASTSNRNFEGRQG-AGGRTHLVSPAMAAAAAVSGHFVDVRE 471          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_XANAC (3-isopropylmalate dehydratase large subunit OS=Xanthomonas axonopodis pv. citri GN=leuC PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.459e-13
Identity = 56/148 (37.84%), Postives = 77/148 (52.03%), Query Frame = -2
Query:  273 VKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSG-------GKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPRE 695
            +++DRV+IGSCT  + ED  AAA V  A G+K       V +T K       L VPGSG        +   ++F +AG +    P C  CL    D   ++     C ST+NRNF GR G   G+ +L SP  AAA+A++G+  D RE
Sbjct:  343 IRLDRVFIGSCTNSRIEDLRAAAAV--AKGRK-------VASTIK-----QALVVPGSGLVKAQAEAEGLDKVFLDAGFEW-REPGCSMCLAMNPD---KLGSGEHCASTSNRNFEGRQG-AGGRTHLVSPAMAAAAAVSGHFVDVRE 471          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_ROSS1 (3-isopropylmalate dehydratase large subunit OS=Roseiflexus sp. (strain RS-1) GN=leuC PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.459e-13
Identity = 73/249 (29.32%), Postives = 107/249 (42.97%), Query Frame = -2
Query:  267 VPADGTTFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSP------DNRA---------LARECKDV----------------KIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFL 881
            +  D TTF+Y+  +   P           +  + +DE A +      D S+L P++    +P      D R           AR+  D                 KID V++GSCT  +  D   AA+  L  G+K+   V   +VP +Q+V           +  +   +IF  AG +   +  C ACLG   D   ++      VST+NRNF GR G    + +LASP TA ASA+ G V DPR +L
Sbjct:  239 IAPDDTTFEYIAGRPFAPKGKAWDEAVAYWRTLPTDEGAVYDRIITLDASQLTPMITYGTNPGMGMPIDGRIPTPEELPDPAARQALDKALRYMDLRPGQPLLGHKIDVVFLGSCTNSRISDLRMAAR--LLKGRKIADGVRMMVVPGSQQVKKQ--------AEAEGLHEIFRAAGAEWREA-GCSACLGMNDD---KVPPGRYAVSTSNRNFEGRQG-PGARTFLASPLTAVASAIEGAVADPRRYL 472          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_RHOBA (3-isopropylmalate dehydratase large subunit OS=Rhodopirellula baltica GN=leuC PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.459e-13
Identity = 51/143 (35.66%), Postives = 73/143 (51.05%), Query Frame = -2
Query:  270 DVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREF 698
            +++I+RV+IGSCT  + ED  AAA V        KV   +VP + KV +         +  +   ++F +AG D      C  CL    D  A       C ST+NRNF GR G K G+ +L SP  AAA+A+ G+  D R++
Sbjct:  353 EIEINRVFIGSCTNARIEDLRAAAAVIKGHHCSDKVNAMIVPGSGKVKLQ--------AEEEGLHKVFTDAGFDW-REAGCSMCLAMNPDKLAPGER---CASTSNRNFEGRQG-KGGRTHLVSPAMAAAAAIKGHFVDIRDW 482          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_PSYWF (3-isopropylmalate dehydratase large subunit OS=Psychrobacter sp. (strain PRwf-1) GN=leuC PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.459e-13
Identity = 72/253 (28.46%), Postives = 104/253 (41.11%), Query Frame = -2
Query:  270 VPADGTTFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPD------------------------NRAL-------ARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSG-------GKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREF 881
            V  D TT +Y++ +   P           +  ++SDE A F +    D S + P V+   SP+                         RA         +   D+K+DR++IGSCT  + ED  +AA V    G+KV                   + V GSG        +   ++F EAG +    P C  CL    D   ++     C ST+NRNF GR G+  G+ +L SP  AAA+AL G+  D R F
Sbjct:  245 VGVDETTIEYVKGRPFAPTGEQWDQAVEYWNTLHSDEGAHFDAIVELDASDIAPQVSWGTSPEMVVDVTQYVPTLAQAKDEVQAEAWERAYQYMGLEQGQPITDIKLDRIFIGSCTNSRIEDLRSAASVI--KGRKVAANV------------KEAIVVAGSGQVKQQAEQEGLDKLFIEAGFEW-REPGCSMCLAMNAD---KLEPQEHCASTSNRNFEGRQGN-GGRTHLVSPAMAAAAALAGHFVDVRSF 478          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_PELUB (3-isopropylmalate dehydratase large subunit OS=Pelagibacter ubique GN=leuC PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.459e-13
Identity = 50/143 (34.97%), Postives = 74/143 (51.75%), Query Frame = -2
Query:  270 DVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREF 698
            D+KID+V+IGSCT G+ ED   AAK+     K   V   +VP +         L    +  +   +IF  +G +    P C  CL    D   ++     C ST+NRNF GR G + G+ +L SP  AAA+A++G + D R++
Sbjct:  336 DIKIDKVFIGSCTNGRIEDLREAAKILKDKKKASHVQAMVVPGS--------GLVKEQAEQEGLDKIFIASGFEW-REPGCSMCLAMNAD---KLKPGERCASTSNRNFEGRQG-RGGRTHLVSPGMAAAAAISGNLDDVRKY 465          
The following BLAST results are available for this feature:
BLAST of CB290757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LEUC_XYLFA3.459e-1338.003-isopropylmalate dehydratase large subunit OS=Xyl... [more]
LEUC_XYLF23.459e-1338.003-isopropylmalate dehydratase large subunit OS=Xyl... [more]
LEUC_XANCP3.459e-1338.263-isopropylmalate dehydratase large subunit OS=Xan... [more]
LEUC_XANC83.459e-1338.263-isopropylmalate dehydratase large subunit OS=Xan... [more]
LEUC_XANC53.459e-1337.843-isopropylmalate dehydratase large subunit OS=Xan... [more]
LEUC_XANAC3.459e-1337.843-isopropylmalate dehydratase large subunit OS=Xan... [more]
LEUC_ROSS13.459e-1329.323-isopropylmalate dehydratase large subunit OS=Ros... [more]
LEUC_RHOBA3.459e-1335.663-isopropylmalate dehydratase large subunit OS=Rho... [more]
LEUC_PSYWF3.459e-1328.463-isopropylmalate dehydratase large subunit OS=Psy... [more]
LEUC_PELUB3.459e-1334.973-isopropylmalate dehydratase large subunit OS=Pel... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01dd06_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dd06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290757 ID=CB290757; Name=CB290757; organism=Citrus sinensis; type=EST; length=882bp
TTTTTTTTTTTTTTTTTAATTTTTTCTCTTATAAATTTTATGCTATTTAT
TGTACTAATTATTGTACATACCTCATTATTCCTATTTTATTAGTACAAAA
TTAACAGTCACAATGTGTCATAACATACAAAATATGCTTGAAGAAGCAAG
GGAAAACAGTTCTTCAGATCTAAGTCACATCCACATAGCCCTTGTCCCTC
GGCAAGAAGAATATGATATCACATAGTGTACATACGTGATCGATTCAGTA
TTTGATCAGTCTACTCCAAGAACTCCCTTGGATCAGTGACATAACCAGTC
AAAGCAGATGCTGCAGCTGTGTATGGAGAAGCAAGATATATTTGGCCTTC
CTTGTGTCCCATCCGTCCAGGGAAGTTCCTATTTGTCGTGGAGACACAGA
CCATAGGTTCATTCATGCGTGCATAAGTGTCTTTAGGGCCACCCAAACAA
GCACCGCAACTAGGACTCGCAGGTGTGTCGCAACCAGCTTCTTCAAATAT
CTGAGAGCAAGTCTTGCCACCAGATCCTGGTACTGGAAGAGTGTATACGT
CCATCCATACCTTTTGGGTAGCAGGGACAAGAAATGTTGGAACTTTGACC
TTTTTGCCTGAAGCTAAGAAGACTTTCGCTGCAGCAAGAAAGTCTTCTGT
TTTTCCACCAGTGCAAGATCCAATGTATACTCTGTCAATTTTTACATCTT
TGCACTCTCTTGCTAAAGCCCGATTGTCAGGAGAATGAGGCTTTGCCACC
AGTGGCTCCAGCTTCGAGATATCAAATCTGTATTCGGACAGGAAACTTGC
TTTCTCATCACTATAAACTGGTTCATAGGGCAACGATGTCTTATCCTCAA
GATATTTAAATGTTGTACCATCAGCAGGGACT
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