CB290757

Overview
NameCB290757
Unique NameCB290757
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_BACSU (3-isopropylmalate dehydratase large subunit OS=Bacillus subtilis GN=leuC PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.242e-12
Identity = 53/151 (35.10%), Postives = 77/151 (50.99%), Query Frame = -2
Query:  264 RECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKV--KVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFLE 710
            ++ +D+K++ V+IGSCT  +  D   AA   +  GKKV   V   +VP +Q V +         +  +   QIF EAG +   S  C  CL    D    + E   C ST+NRNF GR G K  + +L SP  AA +A+ G+  D R+F +
Sbjct:  332 QKIEDIKVEHVFIGSCTNSRMTDLRQAAD--MIKGKKVADSVRAIVVPGSQSVKLQ--------AEKEGLDQIFLEAGFEWRES-GCSMCLSMNNDV---VPEGERCASTSNRNFEGRQG-KGARTHLVSPAMAAMAAIHGHFVDVRKFYQ 467          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_RALEJ (3-isopropylmalate dehydratase large subunit OS=Ralstonia eutropha (strain JMP134) GN=leuC PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.928e-12
Identity = 52/150 (34.67%), Postives = 73/150 (48.67%), Query Frame = -2
Query:  273 KDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSG-------GKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPRE 701
            + + +D+V+IGSCT  + ED  AAA V    G+KV     L             + VPGSG        +   ++F+ AG +    P C  CL    D   R+     C ST+NRNF GR G   G+ +L SP  AAA+A+ G+  D R+
Sbjct:  335 ESINVDKVFIGSCTNSRIEDMRAAAWVVQKLGRKVASNVKL------------AMVVPGSGLVKEQAEREGLDKVFKAAGFEW-REPGCSMCLAMNAD---RLEPGERCASTSNRNFEGRQG-AGGRTHLVSPAMAAAAAIEGHFVDIRK 467          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_POLSJ (3-isopropylmalate dehydratase large subunit OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=leuC PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.928e-12
Identity = 53/151 (35.10%), Postives = 73/151 (48.34%), Query Frame = -2
Query:  267 DVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSG-------GKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFL 698
            D+ +D+V+IGSCT  + ED   AA +    G+KV     L             + VPGSG        +   +IF  AG +    P C  CL    D   R+     C ST+NRNF GR G   G+ +L SP  AAA+A+ G+  D R+F+
Sbjct:  340 DLYVDKVFIGSCTNSRIEDMREAAAIVKKLGQKVAKNVKL------------AMVVPGSGLVKEQAEREGLDKIFVAAGFEW-REPGCSMCLAMNAD---RLEPGERCASTSNRNFEGRQG-AGGRTHLVSPAMAAAAAVHGHFVDVRKFV 473          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_LEPIN (3-isopropylmalate dehydratase large subunit OS=Leptospira interrogans GN=leuC PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.928e-12
Identity = 52/149 (34.90%), Postives = 76/149 (51.01%), Query Frame = -2
Query:  270 RECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKV--KVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREF 710
            ++ +D+ I++V+IGSCT  + ED  AAA      GKKV  KV   +VP + +V           +  +   +IF  AG +   +P C  CL    D     +    C ST+NRNF GR G K G+ +L  P  AAA+A+ G+  D R +
Sbjct:  331 QKIEDISINKVFIGSCTNSRIEDLRAAAAT--VKGKKVSSKVQAIVVPGSGRVKRQ--------AEQEGLDKIFTAAGFEW-RNPGCSMCLAMNDDVLEPGDR---CASTSNRNFEGRQG-KGGRTHLVGPEMAAAAAIEGHFVDIRNW 464          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_LEPIC (3-isopropylmalate dehydratase large subunit OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=leuC PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.928e-12
Identity = 52/149 (34.90%), Postives = 76/149 (51.01%), Query Frame = -2
Query:  270 RECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKV--KVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREF 710
            ++ +D+ I++V+IGSCT  + ED  AAA      GKKV  KV   +VP + +V           +  +   +IF  AG +   +P C  CL    D     +    C ST+NRNF GR G K G+ +L  P  AAA+A+ G+  D R +
Sbjct:  331 QKIEDISINKVFIGSCTNSRIEDLRAAAAT--VKGKKVSSKVQAIVVPGSGRVKRQ--------AEQEGLDKIFTAAGFEW-RNPGCSMCLAMNDDVLEPGDR---CASTSNRNFEGRQG-KGGRTHLVGPEMAAAAAIEGHFVDIRNW 464          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_FRASN (3-isopropylmalate dehydratase large subunit OS=Frankia sp. (strain EAN1pec) GN=leuC PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.928e-12
Identity = 73/245 (29.80%), Postives = 100/245 (40.82%), Query Frame = -2
Query:  273 VPADGTTFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLV--------AKPHS---PD-------------NRALA-------RECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPRE 881
            +  D TTF+YL  + + P           +  + +D  A+F  E   D   L P V        A P S   PD              RALA           DV +D V+IGSCT G+  D   AA V         +   +VP +  V  +        +  +   ++F  AG D   S  C  CLG   DT   +       ST+NRNF GR G   G+ +L SP  AAA+A+TG +T P +
Sbjct:  233 IAPDETTFEYLRGRPNAPTGADWDAAVEYWRTLATDPDATFDHEVVIDGPSLSPYVTWGTNPGQAAPLSSPVPDPAAYADPAARGSVERALAYMDLVPGTPLSDVAVDTVFIGSCTNGRISDLRDAADVLRGRQVADGLRVLVVPGSMAVKAE--------AEAEGLDEVFRAAGADW-RSAGCSMCLGMNPDT---LRPGERSASTSNRNFEGRQG-PGGRTHLVSPAVAAATAVTGRLTAPAD 464          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_CORDI (3-isopropylmalate dehydratase large subunit OS=Corynebacterium diphtheriae GN=leuC PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.928e-12
Identity = 64/245 (26.12%), Postives = 101/245 (41.22%), Query Frame = -2
Query:  273 VPADGTTFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSP------------------DNRALARE-------------CKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPRE 881
            +  D TTF Y++ +   P           ++ + +DE A F +E   D S + P +    +P                  DN  +A E              +D+ ID V++GSCT  + +D   AA +         V   +VP++        T+    +  +   +IF EAG     +  C  CLG   D   ++     C ST+NRNF GR G   G+ +L SP  AAA+A+ G +  P +
Sbjct:  247 IAPDETTFDYIKGREMAPTGQDWDDAVAYWKTLPTDEGAEFDTEITIDGSAITPFITWGTNPGQGLPLSSVVPSPEDFPGDNEKVAAEKALAYMGLTPGTPLRDIAIDTVFLGSCTNARMDDLRIAADILRGRSIADSVRMMVVPSS--------TMIKEQAEAEGLDKIFIEAGAQW-RTAGCSMCLGMNPD---QLTPGERCASTSNRNFEGRQG-PGGRTHLVSPAVAAATAIKGTLASPAD 478          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_BURS3 (3-isopropylmalate dehydratase large subunit OS=Burkholderia sp. (strain 383) GN=leuC PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.928e-12
Identity = 69/252 (27.38%), Postives = 103/252 (40.87%), Query Frame = -2
Query:  273 VPADGTTFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPD------------------------NRALA-------RECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSG-------GKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPRE 881
            V  D TT  YL+ +  +P           +    SD+ A F      + +++ P V    SP+                         RALA          + +K+D+++IGSCT  + ED  AAA V     ++V     L             + VPGSG        +   ++F +AG +    P C  CL    D   R++    C ST+NRNF GR G   G+ +L SP  AAA+A+ G+  D R+
Sbjct:  233 VAVDDTTIDYLKGRPFVPTGAEWNQAVEYWRQFKSDDGAQFDRVVELNAAEIVPQVTWGTSPEMVTSIDGRVPDPEREKDPVKRDAMERALAYMALEPNTPIESIKVDKIFIGSCTNARIEDIRAAAYVVKKLNRRVASNVRL------------AMVVPGSGLVKAQAEREGLDKVFTDAGFEW-REPGCSMCLAMNAD---RLDPGERCASTSNRNFEGRQG-AGGRTHLVSPAMAAAAAIEGHFVDIRQ 467          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_SHESR (3-isopropylmalate dehydratase large subunit OS=Shewanella sp. (strain MR-7) GN=leuC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.824e-12
Identity = 55/149 (36.91%), Postives = 74/149 (49.66%), Query Frame = -2
Query:  273 DVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSG-------GKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPRE 698
            DV I++V+IGSCT  + ED  +AAK   A G+KV                V  + VPGSG        +   +IF EAG +    P C  CL    D   R+     C ST+NRNF GR G +  + +L SP  AAA+A+ G+  D R+
Sbjct:  344 DVAINKVFIGSCTNSRIEDLRSAAK--QAKGRKVA-------------SGVTAIVVPGSGQVKAQAEAEGLDKIFIEAGFEW-RLPGCSMCLAMNDD---RLEAGDRCASTSNRNFEGRQG-RGSRTHLVSPAMAAAAAIAGHFVDIRK 472          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_SHESM (3-isopropylmalate dehydratase large subunit OS=Shewanella sp. (strain MR-4) GN=leuC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.824e-12
Identity = 55/149 (36.91%), Postives = 74/149 (49.66%), Query Frame = -2
Query:  273 DVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSG-------GKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPRE 698
            DV I++V+IGSCT  + ED  +AAK   A G+KV                V  + VPGSG        +   +IF EAG +    P C  CL    D   R+     C ST+NRNF GR G +  + +L SP  AAA+A+ G+  D R+
Sbjct:  344 DVAINKVFIGSCTNSRIEDLRSAAK--QAKGRKVA-------------SGVTAIVVPGSGQVKAQAEAEGLDKIFIEAGFEW-RLPGCSMCLAMNDD---RLEAGDRCASTSNRNFEGRQG-RGSRTHLVSPAMAAAAAIAGHFVDIRK 472          
The following BLAST results are available for this feature:
BLAST of CB290757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LEUC_BACSU2.242e-1235.103-isopropylmalate dehydratase large subunit OS=Bac... [more]
LEUC_RALEJ2.928e-1234.673-isopropylmalate dehydratase large subunit OS=Ral... [more]
LEUC_POLSJ2.928e-1235.103-isopropylmalate dehydratase large subunit OS=Pol... [more]
LEUC_LEPIN2.928e-1234.903-isopropylmalate dehydratase large subunit OS=Lep... [more]
LEUC_LEPIC2.928e-1234.903-isopropylmalate dehydratase large subunit OS=Lep... [more]
LEUC_FRASN2.928e-1229.803-isopropylmalate dehydratase large subunit OS=Fra... [more]
LEUC_CORDI2.928e-1226.123-isopropylmalate dehydratase large subunit OS=Cor... [more]
LEUC_BURS32.928e-1227.383-isopropylmalate dehydratase large subunit OS=Bur... [more]
LEUC_SHESR3.824e-1236.913-isopropylmalate dehydratase large subunit OS=She... [more]
LEUC_SHESM3.824e-1236.913-isopropylmalate dehydratase large subunit OS=She... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01dd06_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dd06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290757 ID=CB290757; Name=CB290757; organism=Citrus sinensis; type=EST; length=882bp
TTTTTTTTTTTTTTTTTAATTTTTTCTCTTATAAATTTTATGCTATTTAT
TGTACTAATTATTGTACATACCTCATTATTCCTATTTTATTAGTACAAAA
TTAACAGTCACAATGTGTCATAACATACAAAATATGCTTGAAGAAGCAAG
GGAAAACAGTTCTTCAGATCTAAGTCACATCCACATAGCCCTTGTCCCTC
GGCAAGAAGAATATGATATCACATAGTGTACATACGTGATCGATTCAGTA
TTTGATCAGTCTACTCCAAGAACTCCCTTGGATCAGTGACATAACCAGTC
AAAGCAGATGCTGCAGCTGTGTATGGAGAAGCAAGATATATTTGGCCTTC
CTTGTGTCCCATCCGTCCAGGGAAGTTCCTATTTGTCGTGGAGACACAGA
CCATAGGTTCATTCATGCGTGCATAAGTGTCTTTAGGGCCACCCAAACAA
GCACCGCAACTAGGACTCGCAGGTGTGTCGCAACCAGCTTCTTCAAATAT
CTGAGAGCAAGTCTTGCCACCAGATCCTGGTACTGGAAGAGTGTATACGT
CCATCCATACCTTTTGGGTAGCAGGGACAAGAAATGTTGGAACTTTGACC
TTTTTGCCTGAAGCTAAGAAGACTTTCGCTGCAGCAAGAAAGTCTTCTGT
TTTTCCACCAGTGCAAGATCCAATGTATACTCTGTCAATTTTTACATCTT
TGCACTCTCTTGCTAAAGCCCGATTGTCAGGAGAATGAGGCTTTGCCACC
AGTGGCTCCAGCTTCGAGATATCAAATCTGTATTCGGACAGGAAACTTGC
TTTCTCATCACTATAAACTGGTTCATAGGGCAACGATGTCTTATCCTCAA
GATATTTAAATGTTGTACCATCAGCAGGGACT
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