CB290757

Overview
NameCB290757
Unique NameCB290757
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_PICTO (3-isopropylmalate dehydratase large subunit OS=Picrophilus torridus GN=leuC PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.146e-24
Identity = 74/201 (36.82%), Postives = 103/201 (51.24%), Query Frame = -2
Query:  273 ADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPRE 875
            AD  T  Y+ +KT+  Y+    DE A +      D S++EP VA P+SPDN     +  + +ID+ YIGSCT G+ ED   AA +         V   +VPA+Q+V+             +    I  +AG    A  +CGACLGG       +     C+STTNRNF GRMG +  ++YLA+P   AASA+ G +  P E
Sbjct:  225 ADEKTLDYIRNKTN-DYKIYKDDENAEYSRIIDIDASEIEPSVAIPNSPDNVRPVSKVSE-RIDQAYIGSCTNGRIEDIRRAALILKDKKIDKNVRLMVVPASQEVYNQALK--------EGLVDIITDAG-GYFAGTTCGACLGGYMGV---LGPGETCISTTNRNFIGRMGDRTSRVYLANPEVVAASAIMGRIASPEE 411          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC2_PYRFU (3-isopropylmalate dehydratase large subunit 2 OS=Pyrococcus furiosus GN=leuC2 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.955e-24
Identity = 68/172 (39.53%), Postives = 95/172 (55.23%), Query Frame = -2
Query:  279 FLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDP 794
            ++ E   +++ L PLVAKPH+P N     E +  KID+V+IGSCT G+ E    AA++    G+KV V T + PA+    M+VY   +         ++ E      P  P CG CLG        + +  + +STTNRNF GRMG    QIYL++P TAA SAL G +T+P
Sbjct:  219 YVKELEIELNSLNPLVAKPHNPANVVPVEEVEGTKIDQVFIGSCTNGRFEQISKAAEIL--EGEKVAVRTIVGPAS----MNVYKRMIEEG---VARKLIEAGAVILP--PGCGPCLGRHMGV---VGDGEIVLSTTNRNFRGRMGSPNAQIYLSNPITAAVSALYGEITNP 376          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC2_METMA (3-isopropylmalate dehydratase large subunit 2 OS=Methanosarcina mazei GN=leuC2 PE=3 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 2.553e-24
Identity = 72/205 (35.12%), Postives = 108/205 (52.68%), Query Frame = -2
Query:  273 VPADGTTFKYLEDKT-SLPYEPVY-SDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPRE 881
            + AD  T  YL+++      +P + SDE A +L    +D+S LEP VA PH+ DN     E +  K+D++++GSCT G+ ED    A +         +   +VPA++  +M +              +    AG    A P CG C+GG   ++  +    V ++T+NRNF GR G  E  +YL+SP TA ASALTG +TDPR+
Sbjct:  227 IEADEVTEAYLKERIPGFKLDPYWKSDEGAKYLDIRYYDVSDLEPQVACPHNVDNVKPVSEVEGTKLDQIFMGSCTNGRFEDIKIMADIMGDEPVAKNLRLLVVPASKTEYMKLLKAGY--------IEKLVNAGAIVEA-PCCGPCMGG---SFGLLGPGEVGLATSNRNFKGREGSAESFVYLSSPATAGASALTGEITDPRK 419          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_PYRKO (3-isopropylmalate dehydratase large subunit OS=Pyrococcus kodakaraensis GN=leuC PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.355e-24
Identity = 68/172 (39.53%), Postives = 94/172 (54.65%), Query Frame = -2
Query:  279 FLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDP 794
            ++ E   D+S L P+VAKPH P N     E +  KID+V+IGSCT G+ E    AA++   +G++V V T + PA+  V+  +    +        +++  +AG      P CG CLG          +  V +STTNRNF GRMG    +IYLASP TAA SAL G +T P
Sbjct:  219 YVLELGIDLSSLPPMVAKPHHPSNGVPVEEVEGTKIDQVFIGSCTNGRFEQIERAAEIL--AGEEVAVRTIIGPASANVYRRMIETGI--------AKVLIDAGA-VILPPGCGPCLGRHMGV---AGDGDVILSTTNRNFRGRMGSPNSEIYLASPVTAALSALYGEITTP 376          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_PYRHO (3-isopropylmalate dehydratase large subunit OS=Pyrococcus horikoshii GN=leuC PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.355e-24
Identity = 69/173 (39.88%), Postives = 95/173 (54.91%), Query Frame = -2
Query:  279 SFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDP 797
            +++ E  F++S L P+VAKP SP N     + +  KID+V+IGSCT G+ E    AA++    G++V V T + PA+  V+  +          +    I  +AG  T   P CG CLG        + +  V +STTNRNF GRMG    +IYLASP TAA SAL G +T P
Sbjct:  218 NYIKEISFELSSLGPMVAKPFSPANGVEVEKVEGTKIDQVFIGSCTNGRFEHIKRAAEIL--KGEEVAVRTIIGPASVNVYKRMVR--------EGIVDILLDAGA-TILPPGCGPCLGRHMGV---LGDKEVVLSTTNRNFRGRMGSPTAEIYLASPLTAAVSALYGEITSP 376          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_HERA2 (3-isopropylmalate dehydratase large subunit OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=leuC PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.267e-23
Identity = 72/183 (39.34%), Postives = 93/183 (50.82%), Query Frame = -2
Query:  252 ASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFLE*TDQ 800
            AS+      D+S LEP V+ PH  DN     +   V +D VY+G+CT G  ED  AAA +         V   +VPA+ +      +L    S G   + +   A   T  +P CGAC+G      A      VCV T NRNF GRMG     IYLASP  AAA+A+TGY+T PR  L+ T+Q
Sbjct:  247 ASYSRVVECDLSTLEPQVSVPHYVDNVVDLADVGRVAVDVVYLGTCTNGHYEDMAAAASILKGRRLAPNVRMIVVPASSE------SLHRAASDGTLATLLAAGA---TIGTPGCGACIGRHMGVLA---PDEVCVFTGNRNFRGRMGSPGANIYLASPEVAAATAVTGYITHPRNVLDSTEQ 417          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC1_METTH (3-isopropylmalate dehydratase large subunit 1 OS=Methanobacterium thermoautotrophicum GN=leuC1 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.655e-23
Identity = 69/201 (34.33%), Postives = 101/201 (50.25%), Query Frame = -2
Query:  279 VPADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDP 881
            V  D  T  Y+  ++  P+    +D  A  LS    D+S LEP VA PH+ DN     E +  +ID+V++GSCT G+  D   AA +         V   ++PA+++V+             +   +IF +AG     +P CG CLGG       +    V +ST+NRNF GR G  E ++YL+S   AAASA+ G +T P
Sbjct:  227 VEPDEKTLNYVRRRSGKPWRVFKTDPDAPSLSVMEVDVSDLEPQVACPHNVDNVKPVTEVEGTEIDQVFLGSCTNGRLSDLRDAAAILKNRKVSDSVRMLVIPASREVYRRAL--------DEGLIEIFVDAGA-LVCNPCCGPCLGG---HVGLVGPGEVSLSTSNRNFRGRQGSPEAEVYLSSAAVAAASAVKGSITHP 415          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_DESDG (3-isopropylmalate dehydratase large subunit OS=Desulfovibrio desulfuricans (strain G20) GN=leuC PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.161e-23
Identity = 69/201 (34.33%), Postives = 98/201 (48.76%), Query Frame = -2
Query:  276 PADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPR 878
            P+D  T  Y   +     E + +D+ A +     FD+S L P +A PH P+N     E + V+I +  IGSCT G+  D   AA V         V   ++PAT  +W             +   + F +AGC      +CG CLGG     A   +    ++TTNRNF GRMG  E ++YL++P  AAASA+ G + DPR
Sbjct:  229 PSDDLTLAYTAARGRND-EKLSADQDAVYERSLSFDVSDLAPQIACPHLPENVRPVTEVQGVQIHQAVIGSCTNGRISDLREAAAVLRGRKVHKSVRCIVLPATPGIWKQALR--------EGLIETFMDAGC-IVGPATCGPCLGGHMGILA---DGERAIATTNRNFRGRMGSLESEVYLSNPSVAAASAVAGEIADPR 416          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_DESDA (3-isopropylmalate dehydratase large subunit OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=leuC PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.687e-23
Identity = 71/184 (38.59%), Postives = 96/184 (52.17%), Query Frame = -2
Query:  279 EPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDP 824
            E + +D  A +      +++  EP+VA PH P N     E +D  I +V IGSCT G+  D   AA+V    G+KV   V   ++P+T  VW             +   ++F EAGC    S +CG CLGG       + +    V+TTNRNF GRMG    ++YLASP  AAASA+TGYV  P
Sbjct:  248 ENMAADSGAVYERVVDMNVTGKEPVVACPHLPSNVKPVSEVRDTAIQQVVIGSCTNGRISDMRDAAEVL--RGRKVDKGVRCIVLPSTPTVWKQCLR--------EGLIEVFMEAGCIVGPS-TCGPCLGGHMGI---LGDGERAVATTNRNFRGRMGSLSSEVYLASPLVAAASAVTGYVAGP 417          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC1_DEIRA (3-isopropylmalate dehydratase large subunit 1 OS=Deinococcus radiodurans GN=leuC1 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.687e-23
Identity = 74/193 (38.34%), Postives = 99/193 (51.30%), Query Frame = -2
Query:  273 VYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCD-----------TPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPRE 818
            VY DE A++  E   D+S L P ++ P   DN     E + +K+D+V+IG+CT G+ ED  AAA+V    G++V   T L             L +P S     SQ+ EEA  D              +P CG C+G  +   A      VCVST+NRNF GRMG K+  IYLASP  AAA+A+ G V  P +
Sbjct:  257 VYPDEGAAYAREVEIDLSALHPRMSAPSEVDNVHDVAELRGLKVDQVFIGTCTNGRIEDLHAAAEVL--RGRRVDPTTRL-------------LVIPAS-----SQVMEEALQDGTLLTLQRAGAVLGTPGCGPCMGRHQGVLA---PGEVCVSTSNRNFIGRMGDKDAHIYLASPAVAAATAVMGRVALPED 426          
The following BLAST results are available for this feature:
BLAST of CB290757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LEUC_PICTO1.146e-2436.823-isopropylmalate dehydratase large subunit OS=Pic... [more]
LEUC2_PYRFU1.955e-2439.533-isopropylmalate dehydratase large subunit 2 OS=P... [more]
LEUC2_METMA2.553e-2435.123-isopropylmalate dehydratase large subunit 2 OS=M... [more]
LEUC_PYRKO4.355e-2439.533-isopropylmalate dehydratase large subunit OS=Pyr... [more]
LEUC_PYRHO4.355e-2439.883-isopropylmalate dehydratase large subunit OS=Pyr... [more]
LEUC_HERA21.267e-2339.343-isopropylmalate dehydratase large subunit OS=Her... [more]
LEUC1_METTH1.655e-2334.333-isopropylmalate dehydratase large subunit 1 OS=M... [more]
LEUC_DESDG2.161e-2334.333-isopropylmalate dehydratase large subunit OS=Des... [more]
LEUC_DESDA3.687e-2338.593-isopropylmalate dehydratase large subunit OS=Des... [more]
LEUC1_DEIRA3.687e-2338.343-isopropylmalate dehydratase large subunit 1 OS=D... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01dd06_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dd06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290757 ID=CB290757; Name=CB290757; organism=Citrus sinensis; type=EST; length=882bp
TTTTTTTTTTTTTTTTTAATTTTTTCTCTTATAAATTTTATGCTATTTAT
TGTACTAATTATTGTACATACCTCATTATTCCTATTTTATTAGTACAAAA
TTAACAGTCACAATGTGTCATAACATACAAAATATGCTTGAAGAAGCAAG
GGAAAACAGTTCTTCAGATCTAAGTCACATCCACATAGCCCTTGTCCCTC
GGCAAGAAGAATATGATATCACATAGTGTACATACGTGATCGATTCAGTA
TTTGATCAGTCTACTCCAAGAACTCCCTTGGATCAGTGACATAACCAGTC
AAAGCAGATGCTGCAGCTGTGTATGGAGAAGCAAGATATATTTGGCCTTC
CTTGTGTCCCATCCGTCCAGGGAAGTTCCTATTTGTCGTGGAGACACAGA
CCATAGGTTCATTCATGCGTGCATAAGTGTCTTTAGGGCCACCCAAACAA
GCACCGCAACTAGGACTCGCAGGTGTGTCGCAACCAGCTTCTTCAAATAT
CTGAGAGCAAGTCTTGCCACCAGATCCTGGTACTGGAAGAGTGTATACGT
CCATCCATACCTTTTGGGTAGCAGGGACAAGAAATGTTGGAACTTTGACC
TTTTTGCCTGAAGCTAAGAAGACTTTCGCTGCAGCAAGAAAGTCTTCTGT
TTTTCCACCAGTGCAAGATCCAATGTATACTCTGTCAATTTTTACATCTT
TGCACTCTCTTGCTAAAGCCCGATTGTCAGGAGAATGAGGCTTTGCCACC
AGTGGCTCCAGCTTCGAGATATCAAATCTGTATTCGGACAGGAAACTTGC
TTTCTCATCACTATAAACTGGTTCATAGGGCAACGATGTCTTATCCTCAA
GATATTTAAATGTTGTACCATCAGCAGGGACT
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