CB290757

Overview
NameCB290757
Unique NameCB290757
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_MESSB (3-isopropylmalate dehydratase large subunit OS=Mesorhizobium sp. (strain BNC1) GN=leuC PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.450e-19
Identity = 78/248 (31.45%), Postives = 114/248 (45.97%), Query Frame = -2
Query:  270 VPADGTTFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDN------------------------RAL-------ARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKV--KVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREF 881
            +  D TT+ Y++D+   P           +E +++DE A F    + D + L P+V    SP++                        RAL         +  D+ +DRV+IGSCT G+ ED  AAAK+  A G+KV  ++   +VP +  V           +  +   +IF EAG D    P C  CL    D   R+     C ST+NRNF GR G K G+ +L SP  AAA+A+ G+  D RE+
Sbjct:  236 IAPDETTYAYIKDRPRAPKGAAWEMARAYWETLHTDEGAHFDRVVKLDAANLPPIVTWGSSPEDVVSVTGYVPNADEIQDETKRLSKKRALEYMGLTAGTKITDIALDRVFIGSCTNGRIEDLRAAAKI--AEGRKVHPRINAMIVPGSGLVKAQ--------AEAEGLDKIFIEAGFDW-REPGCSMCLAMNDD---RLKPGERCASTSNRNFEGRQGFK-GRTHLVSPAMAAAAAIAGHFVDIREW 468          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_PARL1 (3-isopropylmalate dehydratase large subunit OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=leuC PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.894e-19
Identity = 84/253 (33.20%), Postives = 111/253 (43.87%), Query Frame = -2
Query:  270 VPADGTTFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDN------------------------RAL-------ARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSG-------GKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREF 881
            +  D  T+ YLE +   P           ++ + SD  A F  E   DI+ L PL+    SP+N                        RAL            +VKIDRV+IGSCT G+ ED  AAA +   + K +K       A +KV   V  + VPGSG        +   +IF EAG +    P C  CL    D  A       C ST+NRNF GR G + G+ +L SP  A A+A+ G+ TD REF
Sbjct:  234 IAPDDKTYAYLEGRPRAPKGKAWEMAVEYWKTLPSDPDAKFDKEITIDIANLPPLITWGTSPENVIKITDRIPDPKDVADPSHAKSMQRALDYMGLTPGTPINEVKIDRVFIGSCTNGRIEDLRAAAVI---AEKAIK-------AGRKVASTVNAMVVPGSGLVKEQAEKEGLDKIFLEAGFEW-REPGCSMCLAMNADKLAPGER---CASTSNRNFEGRQG-RGGRTHLVSPAMAVAAAIEGHFTDVREF 471          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_RHIME (3-isopropylmalate dehydratase large subunit OS=Rhizobium meliloti GN=leuC PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.230e-19
Identity = 82/253 (32.41%), Postives = 115/253 (45.45%), Query Frame = -2
Query:  270 VPADGTTFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDN------------------------RAL-------ARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSG-------GKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREF 881
            +  D TTF+Y++DK   P           ++ +++DE A +      D + L P+V+   SP++                        RAL         +  D+ IDRV+IGSCT G+ ED  A A+V    G+KV  PT            V  + VPGSG        +   +IF+EAG D    P C  CL    D   R+     C ST+NRNF GR G K G+ +L SP  AAA+A+ G+  D RE+
Sbjct:  236 IAPDETTFEYIKDKPRAPKGEAWDRAVEYWKTLHTDEGAHYDRVVVLDAANLPPIVSWGSSPEDVVSVQGVVPNPDDIQDETKRTSKWRALDYMGLKPGTKITDIAIDRVFIGSCTNGRIEDLRAVAEV--VEGRKV-APT------------VSAMIVPGSGLVKEQAEAEGLDKIFKEAGFDW-REPGCSMCLAMNDD---RLKPGERCASTSNRNFEGRQGFK-GRTHLLSPAMAAAAAVAGHFVDIREW 468          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_SINMW (3-isopropylmalate dehydratase large subunit OS=Sinorhizobium medicae (strain WSM419) GN=leuC PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.218e-19
Identity = 83/253 (32.81%), Postives = 112/253 (44.27%), Query Frame = -2
Query:  270 VPADGTTFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDN------------------------RAL-------ARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSG-------GKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREF 881
            +  D TTF Y+ED+   P           ++ +++DE A +      D + L P+V+   SP++                        RAL            D+ IDRV+IGSCT G+ ED  A AKV    G+KV  PT            V  + VPGSG        +   +IF EAG D    P C  CL    D   R+     C ST+NRNF GR G K G+ +L SP  AAA+A+ G+  D RE+
Sbjct:  236 IAPDETTFAYIEDRPRAPKGEAWDMAVEYWKTLHTDEGAHYDRVVVLDAANLPPIVSWGSSPEDVVSVQGVVPNPDEIPDETKRTSKWRALDYMGLKPGTRITDIAIDRVFIGSCTNGRIEDLRAVAKV--VEGRKV-APT------------VSAMIVPGSGLVKEQAEVEGLDKIFREAGFDW-REPGCSMCLAMNDD---RLKPGERCASTSNRNFEGRQGFK-GRTHLLSPAMAAAAAIAGHFVDIREW 468          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_RHILO (3-isopropylmalate dehydratase large subunit OS=Rhizobium loti GN=leuC PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.218e-19
Identity = 78/246 (31.71%), Postives = 109/246 (44.31%), Query Frame = -2
Query:  270 VPADGTTFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDN------------------------RAL-------ARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREF 881
            + AD TTF Y++DK   P           ++ + SDE A F      D +KL P+V+   SP++                        RAL         +  D+ +DRV+IGSCT G+ ED  AAAKV        +V   +VP +         L    +  +   +IF  AG D    P C  CL    D   R+     C ST+NRNF GR G K G+ +L SP  AAA+A+ G+  D R++
Sbjct:  236 IAADETTFAYVKDKPRAPKGAAWDAALAYWKTLQSDEGAHFDKVIVLDAAKLPPIVSWGSSPEDVVSVQGVVPNPEEITDENKRTSKIRALDYMGLTPGTKITDIALDRVFIGSCTNGRIEDLRAAAKVIEGKTVNPRVNAMIVPGS--------GLVKEQAEAEGLDKIFLAAGFDW-REPGCSMCLAMNDD---RLKPHERCASTSNRNFEGRQGFK-GRTHLVSPAMAAAAAIAGHFVDIRDW 468          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_BRUSU (3-isopropylmalate dehydratase large subunit OS=Brucella suis GN=leuC PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.509e-19
Identity = 83/251 (33.07%), Postives = 111/251 (44.22%), Query Frame = -2
Query:  276 VPADGTTFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDN------------------------RAL-------ARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSG-------GKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPR 881
            +  D TTF+Y++ +   P           ++ ++SDE A F      D   L P+V+   SP++                        RAL         +  D+ +DRV+IGSCT G+ ED  AAAKV    GKKV  PT            V  + VPGSG        +   +IF EAG D    P C  CL    D   R+     C ST+NRNF GR G K G+ +L SP  AAA+A+ G+  D R
Sbjct:  236 IAPDETTFEYIKGRPRAPQGETLEQAINYWKTLHSDEGAHFDKIVTLDAGSLPPIVSWGSSPEDVVSVTGVVPNPDDIADETKRASKWRALDYMGLKPGTKITDIAVDRVFIGSCTNGRIEDLRAAAKV--VEGKKV-APT------------VNAMIVPGSGLVKEQAEAEGLHKIFIEAGFDW-REPGCSMCLAMNDD---RLKPGERCASTSNRNFEGRQGFK-GRTHLVSPAMAAAAAIAGHFVDIR 466          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_BRUSI (3-isopropylmalate dehydratase large subunit OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=leuC PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.509e-19
Identity = 83/251 (33.07%), Postives = 111/251 (44.22%), Query Frame = -2
Query:  276 VPADGTTFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDN------------------------RAL-------ARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSG-------GKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPR 881
            +  D TTF+Y++ +   P           ++ ++SDE A F      D   L P+V+   SP++                        RAL         +  D+ +DRV+IGSCT G+ ED  AAAKV    GKKV  PT            V  + VPGSG        +   +IF EAG D    P C  CL    D   R+     C ST+NRNF GR G K G+ +L SP  AAA+A+ G+  D R
Sbjct:  236 IAPDETTFEYIKGRPRAPQGETLEQAINYWKTLHSDEGAHFDKIVTLDAGSLPPIVSWGSSPEDVVSVTGVVPNPDDIADETKRASKWRALDYMGLKPGTKITDIAVDRVFIGSCTNGRIEDLRAAAKV--VEGKKV-APT------------VNAMIVPGSGLVKEQAEAEGLHKIFIEAGFDW-REPGCSMCLAMNDD---RLKPGERCASTSNRNFEGRQGFK-GRTHLVSPAMAAAAAIAGHFVDIR 466          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_BRUO2 (3-isopropylmalate dehydratase large subunit OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=leuC PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.509e-19
Identity = 83/251 (33.07%), Postives = 111/251 (44.22%), Query Frame = -2
Query:  276 VPADGTTFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDN------------------------RAL-------ARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSG-------GKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPR 881
            +  D TTF+Y++ +   P           ++ ++SDE A F      D   L P+V+   SP++                        RAL         +  D+ +DRV+IGSCT G+ ED  AAAKV    GKKV  PT            V  + VPGSG        +   +IF EAG D    P C  CL    D   R+     C ST+NRNF GR G K G+ +L SP  AAA+A+ G+  D R
Sbjct:  236 IAPDETTFEYIKGRPRAPQGETLEQAINYWKTLHSDEGAHFDKIVTLDAGSLPPIVSWGSSPEDVVSVTGVVPNPDDIADETKRASKWRALDYMGLKPGTKITDIAVDRVFIGSCTNGRIEDLRAAAKV--VEGKKV-APT------------VNAMIVPGSGLVKEQAEAEGLHKIFIEAGFDW-REPGCSMCLAMNDD---RLKPGERCASTSNRNFEGRQGFK-GRTHLVSPAMAAAAAIAGHFVDIR 466          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_BRUME (3-isopropylmalate dehydratase large subunit OS=Brucella melitensis GN=leuC PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.509e-19
Identity = 83/251 (33.07%), Postives = 111/251 (44.22%), Query Frame = -2
Query:  276 VPADGTTFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDN------------------------RAL-------ARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSG-------GKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPR 881
            +  D TTF+Y++ +   P           ++ ++SDE A F      D   L P+V+   SP++                        RAL         +  D+ +DRV+IGSCT G+ ED  AAAKV    GKKV  PT            V  + VPGSG        +   +IF EAG D    P C  CL    D   R+     C ST+NRNF GR G K G+ +L SP  AAA+A+ G+  D R
Sbjct:  236 IAPDETTFEYIKGRPRAPQGETLEQAINYWKTLHSDEGAHFDKIVTLDAGSLPPIVSWGSSPEDVVSVTGVVPNPDDIADETKRASKWRALDYMGLKPGTKITDIAVDRVFIGSCTNGRIEDLRAAAKV--VEGKKV-APT------------VNAMIVPGSGLVKEQAEAEGLHKIFIEAGFDW-REPGCSMCLAMNDD---RLKPGERCASTSNRNFEGRQGFK-GRTHLVSPAMAAAAAIAGHFVDIR 466          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_BRUMB (3-isopropylmalate dehydratase large subunit OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=leuC PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.509e-19
Identity = 83/251 (33.07%), Postives = 111/251 (44.22%), Query Frame = -2
Query:  276 VPADGTTFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDN------------------------RAL-------ARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSG-------GKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPR 881
            +  D TTF+Y++ +   P           ++ ++SDE A F      D   L P+V+   SP++                        RAL         +  D+ +DRV+IGSCT G+ ED  AAAKV    GKKV  PT            V  + VPGSG        +   +IF EAG D    P C  CL    D   R+     C ST+NRNF GR G K G+ +L SP  AAA+A+ G+  D R
Sbjct:  236 IAPDETTFEYIKGRPRAPQGETLEQAINYWKTLHSDEGAHFDKIVTLDAGSLPPIVSWGSSPEDVVSVTGVVPNPDDIADETKRASKWRALDYMGLKPGTKITDIAVDRVFIGSCTNGRIEDLRAAAKV--VEGKKV-APT------------VNAMIVPGSGLVKEQAEAEGLHKIFIEAGFDW-REPGCSMCLAMNDD---RLKPGERCASTSNRNFEGRQGFK-GRTHLVSPAMAAAAAIAGHFVDIR 466          
The following BLAST results are available for this feature:
BLAST of CB290757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LEUC_MESSB1.450e-1931.453-isopropylmalate dehydratase large subunit OS=Mes... [more]
LEUC_PARL11.894e-1933.203-isopropylmalate dehydratase large subunit OS=Par... [more]
LEUC_RHIME3.230e-1932.413-isopropylmalate dehydratase large subunit OS=Rhi... [more]
LEUC_SINMW4.218e-1932.813-isopropylmalate dehydratase large subunit OS=Sin... [more]
LEUC_RHILO4.218e-1931.713-isopropylmalate dehydratase large subunit OS=Rhi... [more]
LEUC_BRUSU5.509e-1933.073-isopropylmalate dehydratase large subunit OS=Bru... [more]
LEUC_BRUSI5.509e-1933.073-isopropylmalate dehydratase large subunit OS=Bru... [more]
LEUC_BRUO25.509e-1933.073-isopropylmalate dehydratase large subunit OS=Bru... [more]
LEUC_BRUME5.509e-1933.073-isopropylmalate dehydratase large subunit OS=Bru... [more]
LEUC_BRUMB5.509e-1933.073-isopropylmalate dehydratase large subunit OS=Bru... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01dd06_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dd06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290757 ID=CB290757; Name=CB290757; organism=Citrus sinensis; type=EST; length=882bp
TTTTTTTTTTTTTTTTTAATTTTTTCTCTTATAAATTTTATGCTATTTAT
TGTACTAATTATTGTACATACCTCATTATTCCTATTTTATTAGTACAAAA
TTAACAGTCACAATGTGTCATAACATACAAAATATGCTTGAAGAAGCAAG
GGAAAACAGTTCTTCAGATCTAAGTCACATCCACATAGCCCTTGTCCCTC
GGCAAGAAGAATATGATATCACATAGTGTACATACGTGATCGATTCAGTA
TTTGATCAGTCTACTCCAAGAACTCCCTTGGATCAGTGACATAACCAGTC
AAAGCAGATGCTGCAGCTGTGTATGGAGAAGCAAGATATATTTGGCCTTC
CTTGTGTCCCATCCGTCCAGGGAAGTTCCTATTTGTCGTGGAGACACAGA
CCATAGGTTCATTCATGCGTGCATAAGTGTCTTTAGGGCCACCCAAACAA
GCACCGCAACTAGGACTCGCAGGTGTGTCGCAACCAGCTTCTTCAAATAT
CTGAGAGCAAGTCTTGCCACCAGATCCTGGTACTGGAAGAGTGTATACGT
CCATCCATACCTTTTGGGTAGCAGGGACAAGAAATGTTGGAACTTTGACC
TTTTTGCCTGAAGCTAAGAAGACTTTCGCTGCAGCAAGAAAGTCTTCTGT
TTTTCCACCAGTGCAAGATCCAATGTATACTCTGTCAATTTTTACATCTT
TGCACTCTCTTGCTAAAGCCCGATTGTCAGGAGAATGAGGCTTTGCCACC
AGTGGCTCCAGCTTCGAGATATCAAATCTGTATTCGGACAGGAAACTTGC
TTTCTCATCACTATAAACTGGTTCATAGGGCAACGATGTCTTATCCTCAA
GATATTTAAATGTTGTACCATCAGCAGGGACT
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