CB290758

Overview
NameCB290758
Unique NameCB290758
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290758 vs. ExPASy Swiss-Prot
Match: LEUC_HYDS0 (3-isopropylmalate dehydratase large subunit OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=leuC PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.138e-21
Identity = 54/152 (35.53%), Postives = 87/152 (57.24%), Query Frame = 1
Query:  313 TLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTD 768
            T+TEKI A  + K ++ PG+ V   +D+ M +DV  P S    +K   E  KV+D++KI ++  H++   D ++     I+RDF  + NIK+F+            + +G+ H  L + G   PG++++G DSHTCT G  G F+TG+G+TD
Sbjct:    4 TITEKIIADHAGKKEVFPGELVTAKIDLAMANDVTAPLSIKTLEKYGIE--KVFDKDKIALVLSHFVPAKDIKSAEQAKIVRDFAKKHNIKWFFG-----------EGEGIEHTLLPENGIVVPGDLVVGADSHTCTYGGIGAFSTGVGSTD 142          
BLAST of CB290758 vs. ExPASy Swiss-Prot
Match: LEUC2_THEMA (3-isopropylmalate dehydratase large subunit 2 OS=Thermotoga maritima GN=leuC2 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.138e-21
Identity = 54/153 (35.29%), Postives = 92/153 (60.13%), Query Frame = 1
Query:  310 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTD 768
            MTL EKI ++ + + ++ PG+ + +  DI + +D+  P +   FK+  G+  K  DR  +V++PDH+    D ++   V ++R+F  EQ I+ F++I  +G          + H+ L +EG  + G++++G DSHTCT GA G FATG+G+TD
Sbjct:    1 MTLAEKILSQKAGR-KVEPGEFLLLEPDIALANDITAPLAIKKFKEYGGKKVKYPDR--VVLVPDHFTPNKDIKSAMQVKMMREFAREQGIEKFFEIGRMG----------IEHVLLPEEGIVKSGDLVVGADSHTCTYGALGAFATGVGSTD 140          
BLAST of CB290758 vs. ExPASy Swiss-Prot
Match: LEUC_CLOAB (3-isopropylmalate dehydratase large subunit OS=Clostridium acetobutylicum GN=leuC PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.792e-21
Identity = 52/157 (33.12%), Postives = 92/157 (58.60%), Query Frame = 1
Query:  298 VKNAMTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTD 768
            +K  MT+T+KI A  +    +  G  +  N+D+++ +DV  P +   FK   G N KV+D++K+ I+PDH+    D ++  +  ++R F   + I+ +++I ++G          + H  + ++G   PG+V++G DSHTCT GA G F+TG+G+TD
Sbjct:    1 MKKPMTMTQKILANHAGLDYVEAGQLITANLDLVLGNDVTTPVAVKAFKT-MGTN-KVFDKKKVAIVPDHFTPNKDIKSAEHCKMIRQFAKSKEIENYFEIGEMG----------IEHALIPEKGLAVPGDVIIGADSHTCTYGALGVFSTGVGSTD 145          
BLAST of CB290758 vs. ExPASy Swiss-Prot
Match: LEUC_THETN (3-isopropylmalate dehydratase large subunit OS=Thermoanaerobacter tengcongensis GN=leuC PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.061e-20
Identity = 52/153 (33.99%), Postives = 95/153 (62.09%), Query Frame = 1
Query:  310 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTD 768
            +TLT+KI +  + + ++ PG+ + ++VD+++ +D+  P +   F+K  G + KV+D  KI ++PDH++ + D ++   V+++R F  + NI  F+++  +G          + H  L ++G   PG+V++G DSHTCT GA   FATG+G+TD
Sbjct:    3 LTLTQKILSAKAGR-EVKPGELIEIDVDMVLGNDITAPVAIKEFEK-IGVD-KVFDNTKIALVPDHFVPSKDIKSAEQVNVMRKFAKKYNIVNFFEVGRMG----------IEHALLPEQGLVLPGDVVIGADSHTCTYGALTCFATGVGSTD 142          
BLAST of CB290758 vs. ExPASy Swiss-Prot
Match: LEUC_CLOBB (3-isopropylmalate dehydratase large subunit OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=leuC PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.061e-20
Identity = 54/153 (35.29%), Postives = 91/153 (59.48%), Query Frame = 1
Query:  310 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTD 768
            MT+T+KI A  +    +  G  + VN+D+++ +D+  P +   FKK FG + KV+++ +I I+PDH+    D +A   V  +R+F  +  I+ F+++ ++G          + H  L ++G    G+V++G DSHTCT GA G F+TGIG+TD
Sbjct:    3 MTMTQKILAAHAGLESVKAGQLIEVNLDLVLGNDITTPVAINEFKK-FGVD-KVFNKSQIAIVPDHFTPNKDIKAAEQVKYVREFSNKMGIENFFEVGEMG----------IEHCLLPEKGLVVAGDVVIGADSHTCTYGALGAFSTGIGSTD 143          
BLAST of CB290758 vs. ExPASy Swiss-Prot
Match: LEUC_CLOBA (3-isopropylmalate dehydratase large subunit OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=leuC PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.061e-20
Identity = 54/153 (35.29%), Postives = 91/153 (59.48%), Query Frame = 1
Query:  310 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTD 768
            MT+T+KI A  +    +  G  + VN+D+++ +D+  P +   FKK FG + KV+++ +I I+PDH+    D +A   V  +R+F  +  I+ F+++ ++G          + H  L ++G    G+V++G DSHTCT GA G F+TGIG+TD
Sbjct:    3 MTMTQKILASHAGLESVKAGQLIEVNLDLVLGNDITTPVAINEFKK-FGVD-KVFNKSQIAIVPDHFTPNKDIKAAEQVKYVREFSNKMGIENFFEVGEMG----------IEHCLLPEKGLVVAGDVVIGADSHTCTYGALGAFSTGIGSTD 143          
BLAST of CB290758 vs. ExPASy Swiss-Prot
Match: LEUC1_PYRAB (3-isopropylmalate dehydratase large subunit 1 OS=Pyrococcus abyssi GN=leuC1 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.810e-20
Identity = 57/153 (37.25%), Postives = 86/153 (56.21%), Query Frame = 1
Query:  310 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTD 768
            MT+ EKI A  SE+ ++ PG+ V   +D +  +DV  P +   F+ E G   +V+DRE+I I+ DH+    D ++       R+F  E  IK+F++   +G          V H  L + G   PG++++G DSHTCT GA G FATG+G+TD
Sbjct:    3 MTIAEKILADHSEREEVKPGEIVMAKLDFVFGNDVTMPLAIKKFR-ELGVK-RVFDRERIAIVLDHFTPNKDIKSAEQCKSSREFAKEMGIKWFFEGGSVG----------VEHCLLPELGLVLPGDLIIGADSHTCTYGALGAFATGVGSTD 143          
BLAST of CB290758 vs. ExPASy Swiss-Prot
Match: LEUC_SULSY (3-isopropylmalate dehydratase large subunit OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=leuC PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.364e-20
Identity = 54/153 (35.29%), Postives = 87/153 (56.86%), Query Frame = 1
Query:  310 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTD 768
            MT+TEKI A  + +  + PG+ V V VD+ + +D+  P +    +K +G + KV D  KI ++ DH+    D  + + + I RDF  +  IK +++ +D           GV H  L ++G   PG++++G DSHTCT G  G F+TG+G+TD
Sbjct:    3 MTITEKIIAAHAGRDYVEPGELVTVKVDLAIANDITAPLAIKQLEK-YGID-KVHDPNKIALVMDHFFPPKDIMSAQQIKISRDFAKKMGIKNYFEGQD----------SGVMHTLLPEKGFVVPGDLVIGADSHTCTYGGIGAFSTGVGSTD 143          
BLAST of CB290758 vs. ExPASy Swiss-Prot
Match: LEUC_CLOPH (3-isopropylmalate dehydratase large subunit OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=leuC PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.364e-20
Identity = 49/153 (32.03%), Postives = 88/153 (57.52%), Query Frame = 1
Query:  310 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTD 768
            MT+T+KI A  +  P++  G  +  N+D+++ +D+ GP    I + +  +   V+D++KI ++PDH+    D ++  +   +R+F  E +I  +++I ++G          + H  L ++G    GE  +G DSHTCT GA G F+TG+G+TD
Sbjct:    3 MTMTQKILAAHANLPEVKAGQLIEANLDLVLANDITGP--VAIHEIQRLKKKTVFDKDKIALVPDHFTPNKDIKSAEHCKCVREFAKEHDITNYFEIGEMG----------IEHALLPEKGLIVAGETCIGADSHTCTYGALGAFSTGVGSTD 143          
BLAST of CB290758 vs. ExPASy Swiss-Prot
Match: LEUC_CLOB8 (3-isopropylmalate dehydratase large subunit OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=leuC PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.364e-20
Identity = 53/153 (34.64%), Postives = 88/153 (57.52%), Query Frame = 1
Query:  310 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTD 768
            MT+T+KI A  +    +  G  +  N+D+++ +D+  P +   FKK FG + KV+ + +I I+PDH+    D +A   V  +R+F     I+ F+++ ++G          + H  L ++G    G+V++G DSHTCT GA G F+TGIG+TD
Sbjct:    3 MTMTQKILAAHAGLEAVKAGQLIEANLDLVLGNDITTPVAVNEFKK-FGTD-KVFSKSQIAIVPDHFTPNKDIKAAEQVKYIREFAQNMEIENFFEVGEMG----------IEHCLLPEKGLVVAGDVVIGADSHTCTYGALGAFSTGIGSTD 143          
The following BLAST results are available for this feature:
BLAST of CB290758 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
LEUC_HYDS02.138e-2135.533-isopropylmalate dehydratase large subunit OS=Hyd... [more]
LEUC2_THEMA2.138e-2135.293-isopropylmalate dehydratase large subunit 2 OS=T... [more]
LEUC_CLOAB2.792e-2133.123-isopropylmalate dehydratase large subunit OS=Clo... [more]
LEUC_THETN1.061e-2033.993-isopropylmalate dehydratase large subunit OS=The... [more]
LEUC_CLOBB1.061e-2035.293-isopropylmalate dehydratase large subunit OS=Clo... [more]
LEUC_CLOBA1.061e-2035.293-isopropylmalate dehydratase large subunit OS=Clo... [more]
LEUC1_PYRAB1.810e-2037.253-isopropylmalate dehydratase large subunit 1 OS=P... [more]
LEUC_SULSY2.364e-2035.293-isopropylmalate dehydratase large subunit OS=Sul... [more]
LEUC_CLOPH2.364e-2032.033-isopropylmalate dehydratase large subunit OS=Clo... [more]
LEUC_CLOB82.364e-2034.643-isopropylmalate dehydratase large subunit OS=Clo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01dd06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dd06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290758 ID=CB290758; Name=CB290758; organism=Citrus sinensis; type=EST; length=769bp
GCACGTGGTTTCTTAGGAAACAAACTAAATTTAGACACTCTTAAATCTTA
ATCCCTACAGAACAAACCAAACCAAAAAAAAACAGGCCTCTTGTAGCAAA
TAAACATGGCTTCCTCTGTCATTTCCCCAGCTCCAACATCTTCTTTCATC
AACAACAAGAAGGATTTGGGTAGCTTTTGTTTTTCGTCGACATCACAATT
TTCAGTCAACAAATGCAAGAAATTGGCAGTCTCCAAGAAAATTGTGTCGG
TCATGGCACCTCAGCAATCAGAACGCCGGCCTGCCACCACTGGCTCGGTA
AAAAATGCGATGACGTTGACGGAGAAGATATTTGCCAGGGCTTCAGAGAA
ACCCCAGTTGAGCCCGGGAGACAATGTGTGGGTTAATGTTGATATCTTGA
TGACCCACGATGTTTGTGGCCCCGGCTCCTTTGGTATCTTTAAAAAAGAG
TTTGGTGAAAATGCTAAGGTTTGGGACCGTGAAAAGATTGTCATTATACC
TGATCATTATATATTCACAAGTGATGAACGTGCAAATCGTAATGTGGATA
TCCTGAGGGATTTCTGCATGGAGCAGAATATCAAGTACTTTTATGATATT
AAAGATCTTGGTAACTTTAAGGCTAACCCGGATTATAAAGGCGTATGTCA
TATTGCACTTGCCCAAGAAGGCCATTGCAGGCCTGGAGAGGTCTTGCTAG
GTACAGACTCCCACACATGTACTGCTGGAGCATTTGGCCAATTTGCCACT
GGCATTGGCAACACTGATG
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