CB290761

Overview
NameCB290761
Unique NameCB290761
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H3_ASPCL (Histone H3 OS=Aspergillus clavatus GN=hht1 PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 7.763e-53
Identity = 112/157 (71.34%), Postives = 120/157 (76.43%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKVPYYRFDCYL*IEFPRFLDRRLIAILLSVLQTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 514
            MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRY+PGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK                               +DLRFQS A+ ALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK-------------------------------SDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQ 126
[Close]
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H33_CANAL (Histone H3.3 OS=Candida albicans GN=HHT3 PE=3 SV=3)

HSP 1 Score: 206.838 bits (525), Expect = 7.763e-53
Identity = 112/157 (71.34%), Postives = 120/157 (76.43%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKVPYYRFDCYL*IEFPRFLDRRLIAILLSVLQTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 514
            MARTKQTARKSTGGKAPRKQLA+KAARKSAP +GGVKKPHRY+PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFK                               +DLRFQS A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI  KD+Q
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPVSGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFK-------------------------------SDLRFQSSAIGALQEAVEAYLVGLFEDTNLCAIHAKRVTIQKKDMQ 126
[Close]
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H3L2_ARATH (Histone H3-like 2 OS=Arabidopsis thaliana GN=MGH3 PE=2 SV=3)

HSP 1 Score: 206.068 bits (523), Expect = 1.324e-52
Identity = 115/158 (72.78%), Postives = 120/158 (75.95%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSA-PTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKVPYYRFDCYL*IEFPRFLDRRLIAILLSVLQTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 514
            MARTKQTARKSTGGK PRK+LATKAARK+  P  GGVK+ HR+RPGTVALREIRKYQKST+LLIRKLPFQRLVREIAQDFKV                               DLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIM KDIQ
Sbjct:    1 MARTKQTARKSTGGKGPRKELATKAARKTRRPYRGGVKRAHRFRPGTVALREIRKYQKSTDLLIRKLPFQRLVREIAQDFKV-------------------------------DLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMSKDIQ 127
[Close]
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H31_TETTH (Histone H3 OS=Tetrahymena thermophila GN=HHT1 PE=1 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 1.324e-52
Identity = 111/157 (70.70%), Postives = 120/157 (76.43%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKVPYYRFDCYL*IEFPRFLDRRLIAILLSVLQTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 514
            MARTKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR+RPGTVALREIRKYQKST+LLIRKLPFQRLVR+IA +FK                                +LRFQS AVLALQEAAEAYLVGLFEDTNLCAIHA+RVTIM KD+Q
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHRFRPGTVALREIRKYQKSTDLLIRKLPFQRLVRDIAHEFKA-------------------------------ELRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMTKDMQ 126
[Close]
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H31_TETPY (Histone H3 OS=Tetrahymena pyriformis PE=1 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 1.324e-52
Identity = 111/157 (70.70%), Postives = 120/157 (76.43%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKVPYYRFDCYL*IEFPRFLDRRLIAILLSVLQTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 514
            MARTKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR+RPGTVALREIRKYQKST+LLIRKLPFQRLVR+IA +FK                                +LRFQS AVLALQEAAEAYLVGLFEDTNLCAIHA+RVTIM KD+Q
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHRFRPGTVALREIRKYQKSTDLLIRKLPFQRLVRDIAHEFKA-------------------------------ELRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMTKDMQ 126
[Close]
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H3_COCIM (Histone H3 OS=Coccidioides immitis GN=HHT1 PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.729e-52
Identity = 111/157 (70.70%), Postives = 119/157 (75.80%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKVPYYRFDCYL*IEFPRFLDRRLIAILLSVLQTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 514
            MARTKQTARKSTGGKAPRKQ+A KAARK+AP+TGGVKKPHRY+PGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK                               +DLRFQS A+ ALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQIAAKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK-------------------------------SDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQ 126
[Close]
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H33_PICST (Histone H3.3 OS=Pichia stipitis GN=HHT3 PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.729e-52
Identity = 112/157 (71.34%), Postives = 119/157 (75.80%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKVPYYRFDCYL*IEFPRFLDRRLIAILLSVLQTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 514
            MARTKQTARKSTGGKAPRKQLA+KAARKSAP +GGVKKPHRY+PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFK                               +DLRFQS A+ ALQEA EAYLV LFEDTNLCAIHAKRVTI  KDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPVSGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFK-------------------------------SDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHAKRVTIQKKDIQ 126
[Close]
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H33_DEBHA (Histone H3.3 OS=Debaryomyces hansenii GN=HHT3 PE=3 SV=3)

HSP 1 Score: 205.682 bits (522), Expect = 1.729e-52
Identity = 112/157 (71.34%), Postives = 119/157 (75.80%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKVPYYRFDCYL*IEFPRFLDRRLIAILLSVLQTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 514
            MARTKQTARKSTGGKAPRKQLA+KAARKSAP +GGVKKPHRY+PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFK                               +DLRFQS A+ ALQEA EAYLV LFEDTNLCAIHAKRVTI  KDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPVSGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFK-------------------------------SDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHAKRVTIQKKDIQ 126
[Close]
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H3L_HUMAN (Histone H3-like OS=Homo sapiens PE=1 SV=3)

HSP 1 Score: 205.297 bits (521), Expect = 2.259e-52
Identity = 116/157 (73.89%), Postives = 119/157 (75.80%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKVPYYRFDCYL*IEFPRFLDRRLIAILLSVLQTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 514
            MARTKQTARKSTGGKAPRKQLATKAARKS P+T GVK PHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDF                                TDLRFQS AV ALQEA+EAYLVGL EDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVK-PHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF-------------------------------NTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTIMPKDIQ 125
[Close]
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H3_AJECA (Histone H3 OS=Ajellomyces capsulata GN=HHT1 PE=3 SV=3)

HSP 1 Score: 204.912 bits (520), Expect = 2.950e-52
Identity = 111/157 (70.70%), Postives = 119/157 (75.80%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKVPYYRFDCYL*IEFPRFLDRRLIAILLSVLQTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 514
            MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRY+PG VALREIR+YQKSTELLIRKLPFQRLVREIAQDFK                               +DLRFQS A+ ALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGAVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK-------------------------------SDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQ 126
The following BLAST results are available for this feature:
BLAST of CB290761 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
H3_ASPCL7.763e-5371.34Histone H3 OS=Aspergillus clavatus GN=hht1 PE=3 SV... [more]
H33_CANAL7.763e-5371.34Histone H3.3 OS=Candida albicans GN=HHT3 PE=3 SV=3[more]
H3L2_ARATH1.324e-5272.78Histone H3-like 2 OS=Arabidopsis thaliana GN=MGH3 ... [more]
H31_TETTH1.324e-5270.70Histone H3 OS=Tetrahymena thermophila GN=HHT1 PE=1... [more]
H31_TETPY1.324e-5270.70Histone H3 OS=Tetrahymena pyriformis PE=1 SV=2[more]
H3_COCIM1.729e-5270.70Histone H3 OS=Coccidioides immitis GN=HHT1 PE=3 SV... [more]
H33_PICST1.729e-5271.34Histone H3.3 OS=Pichia stipitis GN=HHT3 PE=3 SV=1[more]
H33_DEBHA1.729e-5271.34Histone H3.3 OS=Debaryomyces hansenii GN=HHT3 PE=3... [more]
H3L_HUMAN2.259e-5273.89Histone H3-like OS=Homo sapiens PE=1 SV=3[more]
H3_AJECA2.950e-5270.70Histone H3 OS=Ajellomyces capsulata GN=HHT1 PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01dd08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dd08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290761 ID=CB290761; Name=CB290761; organism=Citrus sinensis; type=EST; length=649bp
GCACTAGGGAGAAATTGAGTGGAAGAGTTGAAGAAACTCAGAGATGGCCC
GTACCAAGCAAACTGCACGTAAGTCAACCGGAGGAAAGGCTCCTAGGAAG
CAACTTGCTACCAAGGCCGCCCGTAAGTCTGCGCCCACCACCGGTGGTGT
TAAGAAGCCTCATCGTTACCGTCCTGGAACCGTCGCCCTTCGAGAAATTC
GCAAGTACCAGAAGAGTACCGAGCTGCTTATCAGGAAACTCCCATTCCAG
AGACTTGTTCGTGAAATTGCTCAGGACTTTAAGGTACCTTATTATCGTTT
TGATTGTTATCTTTAAATTGAGTTCCCAAGATTTCTTGATAGACGGTTAA
TAGCTATTTTGTTGTCTGTTTTGCAGACTGATCTGCGTTTCCAGAGCCAT
GCAGTACTGGCCCTGCAGGAGGCAGCGGAGGCTTACCTTGTTGGTCTCTT
CGAGGACACTAACCTCTGCGCCATTCATGCAAAGCGTGTCACTATTATGC
CCAAGGACATACAGCTTGCCCGTAGGATCCGTGGCGAGCGTGCTTAAGCG
TAATTGCTGCTTGCTTCAATTGAATGACTGGAAGGGAAGGGGGAAGTTGT
AATGTGTTAATTTGTACGTGGGGGTTGGTGGGGGTAGATAGGGGTAGGA
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