CB290761

Overview
NameCB290761
Unique NameCB290761
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H32_TETHY (Histone H3.2 (Fragment) OS=Tetrahymena hyperangularis PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.164e-14
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 166
            MARTKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H32_TETFU (Histone H3.2 (Fragment) OS=Tetrahymena furgasoni PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.164e-14
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 166
            MARTKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H32_TETEL (Histone H3.2 (Fragment) OS=Tetrahymena elliotti PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.164e-14
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 166
            MARTKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H32_TETCU (Histone H3.2 (Fragment) OS=Tetrahymena caudata PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.164e-14
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 166
            MARTKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H32_TETCA (Histone H3.2 (Fragment) OS=Tetrahymena capricornis PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.164e-14
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 166
            MARTKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H32_TETAU (Histone H3.2 (Fragment) OS=Tetrahymena australis PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.164e-14
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 166
            MARTKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H32_TETAM (Histone H3.2 (Fragment) OS=Tetrahymena americanus PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.164e-14
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 166
            MARTKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H32_TETBO (Histone H3.2 (Fragment) OS=Tetrahymena borealis PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.604e-13
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 166
            MAR KQTARKSTG +APRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARAKQTARKSTGAEAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H3L2_LILLO (Histone H3-like 2 OS=Lilium longiflorum GN=gcH3 PE=2 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 3.898e-12
Identity = 53/132 (40.15%), Postives = 62/132 (46.97%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKS-APTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKVPYYRFDCYL*IEFPRFLDRRLIAILLSVLQTDLRFQSHAVLALQEAAEAY 436
            MAR K TAR STGGKAPRKQLA+KA RK+  P T GVK+P     G                  RKLPFQ LVR+I QD                               L+T LRF++H+V  L+E  E Y
Sbjct:    1 MARMKHTARMSTGGKAPRKQLASKALRKAPPPPTKGVKQPTTTTSGKWRFARFH----------RKLPFQGLVRKIWQD-------------------------------LKTHLRFKNHSVPPLEEVTEVY 91
The following BLAST results are available for this feature:
BLAST of CB290761 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
H32_TETHY4.164e-1490.24Histone H3.2 (Fragment) OS=Tetrahymena hyperangula... [more]
H32_TETFU4.164e-1490.24Histone H3.2 (Fragment) OS=Tetrahymena furgasoni P... [more]
H32_TETEL4.164e-1490.24Histone H3.2 (Fragment) OS=Tetrahymena elliotti PE... [more]
H32_TETCU4.164e-1490.24Histone H3.2 (Fragment) OS=Tetrahymena caudata PE=... [more]
H32_TETCA4.164e-1490.24Histone H3.2 (Fragment) OS=Tetrahymena capricornis... [more]
H32_TETAU4.164e-1490.24Histone H3.2 (Fragment) OS=Tetrahymena australis P... [more]
H32_TETAM4.164e-1490.24Histone H3.2 (Fragment) OS=Tetrahymena americanus ... [more]
H32_TETBO4.604e-1385.37Histone H3.2 (Fragment) OS=Tetrahymena borealis PE... [more]
H3L2_LILLO3.898e-1240.15Histone H3-like 2 OS=Lilium longiflorum GN=gcH3 PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01dd08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dd08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290761 ID=CB290761; Name=CB290761; organism=Citrus sinensis; type=EST; length=649bp
GCACTAGGGAGAAATTGAGTGGAAGAGTTGAAGAAACTCAGAGATGGCCC
GTACCAAGCAAACTGCACGTAAGTCAACCGGAGGAAAGGCTCCTAGGAAG
CAACTTGCTACCAAGGCCGCCCGTAAGTCTGCGCCCACCACCGGTGGTGT
TAAGAAGCCTCATCGTTACCGTCCTGGAACCGTCGCCCTTCGAGAAATTC
GCAAGTACCAGAAGAGTACCGAGCTGCTTATCAGGAAACTCCCATTCCAG
AGACTTGTTCGTGAAATTGCTCAGGACTTTAAGGTACCTTATTATCGTTT
TGATTGTTATCTTTAAATTGAGTTCCCAAGATTTCTTGATAGACGGTTAA
TAGCTATTTTGTTGTCTGTTTTGCAGACTGATCTGCGTTTCCAGAGCCAT
GCAGTACTGGCCCTGCAGGAGGCAGCGGAGGCTTACCTTGTTGGTCTCTT
CGAGGACACTAACCTCTGCGCCATTCATGCAAAGCGTGTCACTATTATGC
CCAAGGACATACAGCTTGCCCGTAGGATCCGTGGCGAGCGTGCTTAAGCG
TAATTGCTGCTTGCTTCAATTGAATGACTGGAAGGGAAGGGGGAAGTTGT
AATGTGTTAATTTGTACGTGGGGGTTGGTGGGGGTAGATAGGGGTAGGA
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