CB290761

Overview
NameCB290761
Unique NameCB290761
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H31_RAT (Histone H3.1 OS=Rattus norvegicus PE=1 SV=3)

HSP 1 Score: 223.016 bits (567), Expect = 1.047e-57
Identity = 121/157 (77.07%), Postives = 123/157 (78.34%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKVPYYRFDCYL*IEFPRFLDRRLIAILLSVLQTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 514
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK                               TDLRFQS AV+ALQEA EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK-------------------------------TDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H31_MUSPA (Histone H3.1 OS=Mus pahari GN=H3110 PE=2 SV=3)

HSP 1 Score: 223.016 bits (567), Expect = 1.047e-57
Identity = 121/157 (77.07%), Postives = 123/157 (78.34%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKVPYYRFDCYL*IEFPRFLDRRLIAILLSVLQTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 514
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK                               TDLRFQS AV+ALQEA EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK-------------------------------TDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H31_MOUSE (Histone H3.1 OS=Mus musculus GN=Hist1h3a PE=1 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 1.047e-57
Identity = 121/157 (77.07%), Postives = 123/157 (78.34%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKVPYYRFDCYL*IEFPRFLDRRLIAILLSVLQTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 514
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK                               TDLRFQS AV+ALQEA EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK-------------------------------TDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H31_HUMAN (Histone H3.1 OS=Homo sapiens GN=HIST1H3A PE=1 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 1.047e-57
Identity = 121/157 (77.07%), Postives = 123/157 (78.34%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKVPYYRFDCYL*IEFPRFLDRRLIAILLSVLQTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 514
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK                               TDLRFQS AV+ALQEA EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK-------------------------------TDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H31_BOVIN (Histone H3.1 OS=Bos taurus PE=1 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 1.047e-57
Identity = 121/157 (77.07%), Postives = 123/157 (78.34%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKVPYYRFDCYL*IEFPRFLDRRLIAILLSVLQTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 514
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK                               TDLRFQS AV+ALQEA EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK-------------------------------TDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H3L3_ARATH (Histone H3-like 3 OS=Arabidopsis thaliana GN=At1g75600 PE=2 SV=3)

HSP 1 Score: 222.631 bits (566), Expect = 1.367e-57
Identity = 121/157 (77.07%), Postives = 123/157 (78.34%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKVPYYRFDCYL*IEFPRFLDRRLIAILLSVLQTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 514
            MARTKQTARKS GGKAPR  LATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQD+K                               TDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKD+Q
Sbjct:    1 MARTKQTARKSHGGKAPRTLLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDYK-------------------------------TDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDVQ 126
[Close]
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H32_WHEAT (Histone H3.2 OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 1.367e-57
Identity = 122/157 (77.71%), Postives = 123/157 (78.34%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKVPYYRFDCYL*IEFPRFLDRRLIAILLSVLQTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 514
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK                               TDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK-------------------------------TDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H32_PEA (Histone H3.2 OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 1.367e-57
Identity = 122/157 (77.71%), Postives = 123/157 (78.34%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKVPYYRFDCYL*IEFPRFLDRRLIAILLSVLQTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 514
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK                               TDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK-------------------------------TDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H32_ONOVI (Histone H3.2 OS=Onobrychis viciifolia PE=2 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 1.367e-57
Identity = 122/157 (77.71%), Postives = 123/157 (78.34%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKVPYYRFDCYL*IEFPRFLDRRLIAILLSVLQTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 514
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK                               TDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK-------------------------------TDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H32_MEDSA (Histone H3.2 OS=Medicago sativa GN=H3-1.1 PE=1 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 1.367e-57
Identity = 122/157 (77.71%), Postives = 123/157 (78.34%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKVPYYRFDCYL*IEFPRFLDRRLIAILLSVLQTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 514
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK                               TDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK-------------------------------TDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
The following BLAST results are available for this feature:
BLAST of CB290761 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
H31_RAT1.047e-5777.07Histone H3.1 OS=Rattus norvegicus PE=1 SV=3[more]
H31_MUSPA1.047e-5777.07Histone H3.1 OS=Mus pahari GN=H3110 PE=2 SV=3[more]
H31_MOUSE1.047e-5777.07Histone H3.1 OS=Mus musculus GN=Hist1h3a PE=1 SV=2[more]
H31_HUMAN1.047e-5777.07Histone H3.1 OS=Homo sapiens GN=HIST1H3A PE=1 SV=2[more]
H31_BOVIN1.047e-5777.07Histone H3.1 OS=Bos taurus PE=1 SV=2[more]
H3L3_ARATH1.367e-5777.07Histone H3-like 3 OS=Arabidopsis thaliana GN=At1g7... [more]
H32_WHEAT1.367e-5777.71Histone H3.2 OS=Triticum aestivum PE=1 SV=2[more]
H32_PEA1.367e-5777.71Histone H3.2 OS=Pisum sativum PE=1 SV=2[more]
H32_ONOVI1.367e-5777.71Histone H3.2 OS=Onobrychis viciifolia PE=2 SV=2[more]
H32_MEDSA1.367e-5777.71Histone H3.2 OS=Medicago sativa GN=H3-1.1 PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01dd08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dd08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290761 ID=CB290761; Name=CB290761; organism=Citrus sinensis; type=EST; length=649bp
GCACTAGGGAGAAATTGAGTGGAAGAGTTGAAGAAACTCAGAGATGGCCC
GTACCAAGCAAACTGCACGTAAGTCAACCGGAGGAAAGGCTCCTAGGAAG
CAACTTGCTACCAAGGCCGCCCGTAAGTCTGCGCCCACCACCGGTGGTGT
TAAGAAGCCTCATCGTTACCGTCCTGGAACCGTCGCCCTTCGAGAAATTC
GCAAGTACCAGAAGAGTACCGAGCTGCTTATCAGGAAACTCCCATTCCAG
AGACTTGTTCGTGAAATTGCTCAGGACTTTAAGGTACCTTATTATCGTTT
TGATTGTTATCTTTAAATTGAGTTCCCAAGATTTCTTGATAGACGGTTAA
TAGCTATTTTGTTGTCTGTTTTGCAGACTGATCTGCGTTTCCAGAGCCAT
GCAGTACTGGCCCTGCAGGAGGCAGCGGAGGCTTACCTTGTTGGTCTCTT
CGAGGACACTAACCTCTGCGCCATTCATGCAAAGCGTGTCACTATTATGC
CCAAGGACATACAGCTTGCCCGTAGGATCCGTGGCGAGCGTGCTTAAGCG
TAATTGCTGCTTGCTTCAATTGAATGACTGGAAGGGAAGGGGGAAGTTGT
AATGTGTTAATTTGTACGTGGGGGTTGGTGGGGGTAGATAGGGGTAGGA
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