CB290761

Overview
NameCB290761
Unique NameCB290761
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H33_RABIT (Histone H3.3 OS=Oryctolagus cuniculus GN=H3F3A PE=2 SV=2)

HSP 1 Score: 220.705 bits (561), Expect = 5.195e-57
Identity = 120/157 (76.43%), Postives = 124/157 (78.98%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKVPYYRFDCYL*IEFPRFLDRRLIAILLSVLQTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 514
            MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK                               TDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK-------------------------------TDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H33_PIG (Histone H3.3 OS=Sus scrofa GN=H3F3A PE=2 SV=3)

HSP 1 Score: 220.705 bits (561), Expect = 5.195e-57
Identity = 120/157 (76.43%), Postives = 124/157 (78.98%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKVPYYRFDCYL*IEFPRFLDRRLIAILLSVLQTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 514
            MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK                               TDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK-------------------------------TDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H33_MOUSE (Histone H3.3 OS=Mus musculus GN=H3f3a PE=1 SV=2)

HSP 1 Score: 220.705 bits (561), Expect = 5.195e-57
Identity = 120/157 (76.43%), Postives = 124/157 (78.98%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKVPYYRFDCYL*IEFPRFLDRRLIAILLSVLQTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 514
            MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK                               TDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK-------------------------------TDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H33_HUMAN (Histone H3.3 OS=Homo sapiens GN=H3F3A PE=1 SV=2)

HSP 1 Score: 220.705 bits (561), Expect = 5.195e-57
Identity = 120/157 (76.43%), Postives = 124/157 (78.98%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKVPYYRFDCYL*IEFPRFLDRRLIAILLSVLQTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 514
            MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK                               TDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK-------------------------------TDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H33_DROME (Histone H3.3 OS=Drosophila melanogaster GN=His3.3A PE=1 SV=2)

HSP 1 Score: 220.705 bits (561), Expect = 5.195e-57
Identity = 120/157 (76.43%), Postives = 124/157 (78.98%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKVPYYRFDCYL*IEFPRFLDRRLIAILLSVLQTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 514
            MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK                               TDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK-------------------------------TDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H33_DROHY (Histone H3.3 OS=Drosophila hydei GN=His3.3A PE=3 SV=2)

HSP 1 Score: 220.705 bits (561), Expect = 5.195e-57
Identity = 120/157 (76.43%), Postives = 124/157 (78.98%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKVPYYRFDCYL*IEFPRFLDRRLIAILLSVLQTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 514
            MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK                               TDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK-------------------------------TDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H33_DANRE (Histone H3.3 OS=Danio rerio GN=h3f3a PE=2 SV=3)

HSP 1 Score: 220.705 bits (561), Expect = 5.195e-57
Identity = 120/157 (76.43%), Postives = 124/157 (78.98%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKVPYYRFDCYL*IEFPRFLDRRLIAILLSVLQTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 514
            MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK                               TDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK-------------------------------TDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H33_CHICK (Histone H3.3 OS=Gallus gallus GN=H3-IX PE=2 SV=2)

HSP 1 Score: 220.705 bits (561), Expect = 5.195e-57
Identity = 120/157 (76.43%), Postives = 124/157 (78.98%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKVPYYRFDCYL*IEFPRFLDRRLIAILLSVLQTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 514
            MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK                               TDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK-------------------------------TDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H33_BOVIN (Histone H3.3 OS=Bos taurus GN=H3F3A PE=1 SV=3)

HSP 1 Score: 220.705 bits (561), Expect = 5.195e-57
Identity = 120/157 (76.43%), Postives = 124/157 (78.98%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKVPYYRFDCYL*IEFPRFLDRRLIAILLSVLQTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 514
            MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK                               TDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK-------------------------------TDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H3_VOLCA (Histone H3 OS=Volvox carteri GN=H3-I PE=3 SV=2)

HSP 1 Score: 219.55 bits (558), Expect = 1.157e-56
Identity = 122/157 (77.71%), Postives = 123/157 (78.34%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKVPYYRFDCYL*IEFPRFLDRRLIAILLSVLQTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 514
            MARTKQTARKSTGGKAPRKQLATKAARK+ P TGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK                               TDLRFQS AVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKT-PATGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK-------------------------------TDLRFQSQAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 125
The following BLAST results are available for this feature:
BLAST of CB290761 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
H33_RABIT5.195e-5776.43Histone H3.3 OS=Oryctolagus cuniculus GN=H3F3A PE=... [more]
H33_PIG5.195e-5776.43Histone H3.3 OS=Sus scrofa GN=H3F3A PE=2 SV=3[more]
H33_MOUSE5.195e-5776.43Histone H3.3 OS=Mus musculus GN=H3f3a PE=1 SV=2[more]
H33_HUMAN5.195e-5776.43Histone H3.3 OS=Homo sapiens GN=H3F3A PE=1 SV=2[more]
H33_DROME5.195e-5776.43Histone H3.3 OS=Drosophila melanogaster GN=His3.3A... [more]
H33_DROHY5.195e-5776.43Histone H3.3 OS=Drosophila hydei GN=His3.3A PE=3 S... [more]
H33_DANRE5.195e-5776.43Histone H3.3 OS=Danio rerio GN=h3f3a PE=2 SV=3[more]
H33_CHICK5.195e-5776.43Histone H3.3 OS=Gallus gallus GN=H3-IX PE=2 SV=2[more]
H33_BOVIN5.195e-5776.43Histone H3.3 OS=Bos taurus GN=H3F3A PE=1 SV=3[more]
H3_VOLCA1.157e-5677.71Histone H3 OS=Volvox carteri GN=H3-I PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01dd08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dd08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290761 ID=CB290761; Name=CB290761; organism=Citrus sinensis; type=EST; length=649bp
GCACTAGGGAGAAATTGAGTGGAAGAGTTGAAGAAACTCAGAGATGGCCC
GTACCAAGCAAACTGCACGTAAGTCAACCGGAGGAAAGGCTCCTAGGAAG
CAACTTGCTACCAAGGCCGCCCGTAAGTCTGCGCCCACCACCGGTGGTGT
TAAGAAGCCTCATCGTTACCGTCCTGGAACCGTCGCCCTTCGAGAAATTC
GCAAGTACCAGAAGAGTACCGAGCTGCTTATCAGGAAACTCCCATTCCAG
AGACTTGTTCGTGAAATTGCTCAGGACTTTAAGGTACCTTATTATCGTTT
TGATTGTTATCTTTAAATTGAGTTCCCAAGATTTCTTGATAGACGGTTAA
TAGCTATTTTGTTGTCTGTTTTGCAGACTGATCTGCGTTTCCAGAGCCAT
GCAGTACTGGCCCTGCAGGAGGCAGCGGAGGCTTACCTTGTTGGTCTCTT
CGAGGACACTAACCTCTGCGCCATTCATGCAAAGCGTGTCACTATTATGC
CCAAGGACATACAGCTTGCCCGTAGGATCCGTGGCGAGCGTGCTTAAGCG
TAATTGCTGCTTGCTTCAATTGAATGACTGGAAGGGAAGGGGGAAGTTGT
AATGTGTTAATTTGTACGTGGGGGTTGGTGGGGGTAGATAGGGGTAGGA
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