CB290761

Overview
NameCB290761
Unique NameCB290761
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H32_CHLRE (Histone H3 type 2 OS=Chlamydomonas reinhardtii GN=ch3-II PE=1 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.157e-56
Identity = 122/157 (77.71%), Postives = 123/157 (78.34%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKVPYYRFDCYL*IEFPRFLDRRLIAILLSVLQTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 514
            MARTKQTARKSTGGKAPRKQLATKAARK+ P TGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK                               TDLRFQS AVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKT-PATGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK-------------------------------TDLRFQSQAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 125
[Close]
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H33_PONAB (Histone H3.3 OS=Pongo abelii PE=2 SV=3)

HSP 1 Score: 219.164 bits (557), Expect = 1.512e-56
Identity = 119/157 (75.80%), Postives = 123/157 (78.34%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKVPYYRFDCYL*IEFPRFLDRRLIAILLSVLQTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 514
            MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRL REIAQDFK                               TDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLAREIAQDFK-------------------------------TDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H3_STRPU (Histone H3, embryonic OS=Strongylocentrotus purpuratus PE=2 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 1.974e-56
Identity = 119/157 (75.80%), Postives = 123/157 (78.34%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKVPYYRFDCYL*IEFPRFLDRRLIAILLSVLQTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 514
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK                               T+LRFQS AV+ALQEA+EAYLV LFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK-------------------------------TELRFQSSAVMALQEASEAYLVRLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H32_LILLO (Histone H3.2 OS=Lilium longiflorum GN=YAH3 PE=1 SV=3)

HSP 1 Score: 218.779 bits (556), Expect = 1.974e-56
Identity = 119/157 (75.80%), Postives = 122/157 (77.71%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKVPYYRFDCYL*IEFPRFLDRRLIAILLSVLQTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 514
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK                                DLRFQS AV ALQEA+E+YLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK-------------------------------ADLRFQSSAVAALQEASESYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H3_CAEEL (Histone H3 OS=Caenorhabditis elegans GN=his-2 PE=1 SV=4)

HSP 1 Score: 218.394 bits (555), Expect = 2.578e-56
Identity = 118/157 (75.16%), Postives = 122/157 (77.71%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKVPYYRFDCYL*IEFPRFLDRRLIAILLSVLQTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 514
            MARTKQTARKSTGGKAPRKQLATKAARKSAP +GGVKKPHRYRPGTVALREIR+YQKSTELLIR+ PFQRLVREIAQDFK                               TDLRFQS AV+ALQEA EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPASGGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPFQRLVREIAQDFK-------------------------------TDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H31_CHLRE (Histone H3 type 1 OS=Chlamydomonas reinhardtii GN=ch3-I PE=1 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.578e-56
Identity = 121/157 (77.07%), Postives = 123/157 (78.34%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKVPYYRFDCYL*IEFPRFLDRRLIAILLSVLQTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 514
            MARTKQTARKSTGGKAPRKQLATKAARK+ P TGGVKKPHRYRPGTVALREIRKYQKSTEL+IRKLPFQRLVREIAQDFK                               TDLRFQS AVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKT-PATGGVKKPHRYRPGTVALREIRKYQKSTELVIRKLPFQRLVREIAQDFK-------------------------------TDLRFQSQAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 125
[Close]
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H3_GRIJA (Histone H3 OS=Griffithsia japonica PE=2 SV=3)

HSP 1 Score: 218.009 bits (554), Expect = 3.367e-56
Identity = 117/157 (74.52%), Postives = 124/157 (78.98%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKVPYYRFDCYL*IEFPRFLDRRLIAILLSVLQTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 514
            MARTKQTARKSTGGKAPRKQLATKAARKSAP +GGVKKPHR+RPGTVALREIR++QKSTELL+RKLPFQRLVREIAQDFK                               +DLRFQS AVLALQEAAEAY+VGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPASGGVKKPHRFRPGTVALREIRRFQKSTELLVRKLPFQRLVREIAQDFK-------------------------------SDLRFQSSAVLALQEAAEAYMVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H31T_HUMAN (Histone H3.1t OS=Homo sapiens GN=HIST3H3 PE=1 SV=3)

HSP 1 Score: 217.624 bits (553), Expect = 4.398e-56
Identity = 117/157 (74.52%), Postives = 121/157 (77.07%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKVPYYRFDCYL*IEFPRFLDRRLIAILLSVLQTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 514
            MARTKQTARKSTGGKAPRKQLATK ARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRL+REIAQDFK                               TDLRFQS AV+ALQEA E+YLVGLFEDTNLC IHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKVARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLMREIAQDFK-------------------------------TDLRFQSSAVMALQEACESYLVGLFEDTNLCVIHAKRVTIMPKDIQ 126
[Close]
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H3L_XENLA (Histone H3-like OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 3.723e-55
Identity = 116/157 (73.89%), Postives = 120/157 (76.43%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKVPYYRFDCYL*IEFPRFLDRRLIAILLSVLQTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 514
            MARTKQTARKSTGGKAPRKQL TKAA+K AP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK                               TDLRFQ  AV+ALQEA+EAYLV LFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLVTKAAKKCAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK-------------------------------TDLRFQRSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H33_CHLRE (Histone H3 type 3 OS=Chlamydomonas reinhardtii GN=ch3-IV PE=1 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 3.723e-55
Identity = 120/157 (76.43%), Postives = 122/157 (77.71%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKVPYYRFDCYL*IEFPRFLDRRLIAILLSVLQTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 514
            MARTKQTARKSTGGKAPRKQLATKAARK+ P TGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK                               TDLRFQS AV+ALQEAAEAYLVGLFEDTNLCAI AKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKT-PATGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK-------------------------------TDLRFQSQAVVALQEAAEAYLVGLFEDTNLCAITAKRVTIMPKDIQ 125
The following BLAST results are available for this feature:
BLAST of CB290761 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
H32_CHLRE1.157e-5677.71Histone H3 type 2 OS=Chlamydomonas reinhardtii GN=... [more]
H33_PONAB1.512e-5675.80Histone H3.3 OS=Pongo abelii PE=2 SV=3[more]
H3_STRPU1.974e-5675.80Histone H3, embryonic OS=Strongylocentrotus purpur... [more]
H32_LILLO1.974e-5675.80Histone H3.2 OS=Lilium longiflorum GN=YAH3 PE=1 SV... [more]
H3_CAEEL2.578e-5675.16Histone H3 OS=Caenorhabditis elegans GN=his-2 PE=1... [more]
H31_CHLRE2.578e-5677.07Histone H3 type 1 OS=Chlamydomonas reinhardtii GN=... [more]
H3_GRIJA3.367e-5674.52Histone H3 OS=Griffithsia japonica PE=2 SV=3[more]
H31T_HUMAN4.398e-5674.52Histone H3.1t OS=Homo sapiens GN=HIST3H3 PE=1 SV=3[more]
H3L_XENLA3.723e-5573.89Histone H3-like OS=Xenopus laevis PE=1 SV=2[more]
H33_CHLRE3.723e-5576.43Histone H3 type 3 OS=Chlamydomonas reinhardtii GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01dd08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dd08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290761 ID=CB290761; Name=CB290761; organism=Citrus sinensis; type=EST; length=649bp
GCACTAGGGAGAAATTGAGTGGAAGAGTTGAAGAAACTCAGAGATGGCCC
GTACCAAGCAAACTGCACGTAAGTCAACCGGAGGAAAGGCTCCTAGGAAG
CAACTTGCTACCAAGGCCGCCCGTAAGTCTGCGCCCACCACCGGTGGTGT
TAAGAAGCCTCATCGTTACCGTCCTGGAACCGTCGCCCTTCGAGAAATTC
GCAAGTACCAGAAGAGTACCGAGCTGCTTATCAGGAAACTCCCATTCCAG
AGACTTGTTCGTGAAATTGCTCAGGACTTTAAGGTACCTTATTATCGTTT
TGATTGTTATCTTTAAATTGAGTTCCCAAGATTTCTTGATAGACGGTTAA
TAGCTATTTTGTTGTCTGTTTTGCAGACTGATCTGCGTTTCCAGAGCCAT
GCAGTACTGGCCCTGCAGGAGGCAGCGGAGGCTTACCTTGTTGGTCTCTT
CGAGGACACTAACCTCTGCGCCATTCATGCAAAGCGTGTCACTATTATGC
CCAAGGACATACAGCTTGCCCGTAGGATCCGTGGCGAGCGTGCTTAAGCG
TAATTGCTGCTTGCTTCAATTGAATGACTGGAAGGGAAGGGGGAAGTTGT
AATGTGTTAATTTGTACGTGGGGGTTGGTGGGGGTAGATAGGGGTAGGA
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