CB290795

Overview
NameCB290795
Unique NameCB290795
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290795 vs. ExPASy Swiss-Prot
Match: RL6B_YEAST (60S ribosomal protein L6-B OS=Saccharomyces cerevisiae GN=RPL6B PE=1 SV=4)

HSP 1 Score: 160.229 bits (404), Expect = 1.195e-38
Identity = 87/170 (51.18%), Postives = 107/170 (62.94%), Query Frame = 1
Query:  235 FYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 744
            +YP++DV  P   ++  +P KLRAS+ PGTVLI+LAGRF+GKRVV+LK L    LLV+GPFK+NGVPLRRVN  YVI TSTKV + GVNV+KF+ +YFAKE                            +DQK VD  L+  I+  P LK YL A FSL+ G KPH L F
Sbjct:    9 WYPSEDVAAPKKTRKAVRPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLVTGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKE--KLTKKEKKEANLFPEQQTKEIKTERVEDQKVVDKALLAEIKKTPLLKQYLSASFSLKNGDKPHLLKF 176          
BLAST of CB290795 vs. ExPASy Swiss-Prot
Match: RL6A_YEAST (60S ribosomal protein L6-A OS=Saccharomyces cerevisiae GN=RPL6A PE=1 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 3.476e-38
Identity = 87/170 (51.18%), Postives = 106/170 (62.35%), Query Frame = 1
Query:  235 FYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 744
            +YP++DV      ++  +P KLRAS+ PGTVLI+LAGRF+GKRVV+LK L    LL+SGPFK+NGVPLRRVN  YVI TSTKV + GVNV+KF+ +YFAKE                            +DQK VD  LI  I+  P LK YL A FSL+ G KPH L F
Sbjct:    9 WYPSEDVAALKKTRKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKE--KLTKKEKKEANLFPEQQNKEIKAERVEDQKVVDKALIAEIKKTPLLKQYLSASFSLKNGDKPHMLKF 176          
BLAST of CB290795 vs. ExPASy Swiss-Prot
Match: RL6_SCHPO (60S ribosomal protein L6 OS=Schizosaccharomyces pombe GN=rpl6 PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 3.367e-33
Identity = 80/171 (46.78%), Postives = 106/171 (61.99%), Query Frame = 1
Query:  235 FYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTST-KVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 744
            +YPA     P   ++  +PTKLRAS+ PGTV I+LAGRF+GKRVV L QL    L+V+GP+K+NGVP+RRVN  YVI TS  K+D+SGV+V+KF   YFAK+                             DQK+VDA L+ AI+A+P++K YL A F+L  G +PH + F
Sbjct:   27 YYPAYRENVPKKARKAVRPTKLRASLAPGTVCILLAGRFRGKRVVVLSQL-EDTLVVTGPYKVNGVPIRRVNHRYVIATSAPKIDVSGVSVEKFTKAYFAKQ-KRSGPVKKDEAFFAENAPKNALPAERIADQKAVDAKLLPAIKAIPNMKEYLAASFALSNGDRPHLMKF 195          
BLAST of CB290795 vs. ExPASy Swiss-Prot
Match: RL6_DICDI (60S ribosomal protein L6 OS=Dictyostelium discoideum GN=rpl6 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.564e-30
Identity = 75/158 (47.47%), Postives = 94/158 (59.49%), Query Frame = 1
Query:  274 KRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV-DKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 744
            K+  +   LR SITPGTVLIILAGRF GKRVV LKQL SGL+L++GPFK+NGVPLRR++Q YVI TSTK+D+S V V    +D YFA E                             DQKSVD+ ++  ++    L  YL  +F L+ G  PH+L F
Sbjct:   79 KKVQQKVALRKSITPGTVLIILAGRFAGKRVVALKQLDSGLILITGPFKVNGVPLRRIDQRYVIATSTKIDVSSVKVAATINDAYFAAEKKSTTKSEGAFFSDEKKAEKKKIADSRVADQKSVDSAILAVLKKEKFLTVYLKTKFYLKKGEFPHQLKF 236          
BLAST of CB290795 vs. ExPASy Swiss-Prot
Match: RL6_CAEEL (60S ribosomal protein L6 OS=Caenorhabditis elegans GN=rpl-6 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.729e-29
Identity = 92/245 (37.55%), Postives = 124/245 (50.61%), Query Frame = 1
Query:   46 MAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKR-------KPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLP-SGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV-DKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLK---AYLGARFSLRAGMKPHELVF 744
            M  K+  P +SRN +L  G+ +FS S++  K+G    K                         F      K P + +          K   LR ++TPGTVLI+LAGR KGKRVVFLKQLP SGLLLV+GP KING PLRR+ Q++VI TS KV++SGV + +  +D+YF ++                             D K+VDAP++ AI+  P+ K    YLG RFSL     PH++ F
Sbjct:    1 MVGKRNLPVISRNFDLSPGVLRFSASRLRLKKGEKKPK-------------------------FTKDTSAKLPKLQRNGTKFALGHSKTVTLRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATSLKVNVSGVKIPEHINDEYFKRK---STAQKTGKNIFASGKTEYTVSEQRKKDIKTVDAPILAAIKKHPEHKFLFGYLGTRFSLGKNQYPHKMQF 217          
The following BLAST results are available for this feature:
BLAST of CB290795 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RL6B_YEAST1.195e-3851.1860S ribosomal protein L6-B OS=Saccharomyces cerevi... [more]
RL6A_YEAST3.476e-3851.1860S ribosomal protein L6-A OS=Saccharomyces cerevi... [more]
RL6_SCHPO3.367e-3346.7860S ribosomal protein L6 OS=Schizosaccharomyces po... [more]
RL6_DICDI1.564e-3047.4760S ribosomal protein L6 OS=Dictyostelium discoide... [more]
RL6_CAEEL1.729e-2937.5560S ribosomal protein L6 OS=Caenorhabditis elegans... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01df02_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01df02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290795 ID=CB290795; Name=CB290795; organism=Citrus sinensis; type=EST; length=800bp
GCACGTGGCTCATTCACAGAGGCACAGCAGAAGCGGGTAGCATCAATGGC
GCCGAAGCAAGGGAAGCCAAGAGTGAGCAGGAATCCGGAGCTGATCCGAG
GAATTGGAAAGTTCTCTCGTTCAAAGATGTACCATAAGAGGGGTCTCTGG
GCAATTAAAGCCAAAAACGGTGGCGTCTTTCCTCGTCACGACCCCAAGCC
CAAAGCCGCTGCTCCCGCCGAGAAGCCCCCCAAGTTTTACCCCGCCGATG
ACGTCAAGAAACCACTCGTCAACAAGCGCAAGCCTAAACCCACCAAACTT
AGAGCAAGCATCACCCCAGGGACAGTGCTGATTATACTAGCTGGAAGGTT
CAAGGGTAAGAGAGTTGTGTTCCTGAAGCAGCTTCCATCTGGGTTGCTTC
TAGTTTCTGGGCCATTTAAGATCAATGGTGTTCCTTTACGACGTGTGAAC
CAGTCTTACGTGATTGGAACTTCTACCAAAGTTGATATCTCCGGAGTGAA
TGTGGATAAGTTTGATGATAAGTATTTTGCCAAGGAAGTCGAGAGGAAGA
AGAAGAAAGGAGAGAATGAGTTCTTTGAGTCAGAGAAAGAGGAGAAGAAG
TCGCTTCCTCAGGAGAAGAAGGATGATCAGAAGTCTGTTGATGCACCATT
GATCAAGGCCATTGAAGCTGTTCCAGACTTGAAGGCTTACCTTGGTGCTA
GGTTTTCCCTCAGGGCCGGCATGAAACCTCATGAACTTGTCTTCTGAAAA
CATGTTGAAACAATTTAGGATTGCTTTGCTTTTTCCTACTTGTTATGTTT
back to top