CB290808

Overview
NameCB290808
Unique NameCB290808
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length835
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290808 vs. ExPASy Swiss-Prot
Match: IMA1_HUMAN (Importin subunit alpha-1 OS=Homo sapiens GN=KPNA1 PE=1 SV=2)

HSP 1 Score: 193.741 bits (491), Expect = 1.046e-48
Identity = 97/154 (62.99%), Postives = 119/154 (77.27%), Query Frame = -3
Query:  372 KSIKKEACWTISNITAGNRAQIQAVIEANIILPLVHLLQHAEFEIKKEAAWAISNATSGGSHQQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEADKEMGMNNGINVYAQMIDECDGLDKIENLQTHDNNEIYEKAVKILERYW 833
            +SIKKEACWTISNITAGNRAQIQ VI+ANI   L+ +LQ AEF  +KEAAWAI+NATSGGS +QI++LV  GCIKPLCDLL   D +IV V L GLENIL++GE + +     GIN Y  +I+E  GLDKIE LQ+H+N EIY+KA  ++E Y+
Sbjct:  352 ESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRN-GTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 504          
BLAST of CB290808 vs. ExPASy Swiss-Prot
Match: IMA1_BOVIN (Importin subunit alpha-1 OS=Bos taurus GN=KPNA1 PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.046e-48
Identity = 97/154 (62.99%), Postives = 119/154 (77.27%), Query Frame = -3
Query:  372 KSIKKEACWTISNITAGNRAQIQAVIEANIILPLVHLLQHAEFEIKKEAAWAISNATSGGSHQQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEADKEMGMNNGINVYAQMIDECDGLDKIENLQTHDNNEIYEKAVKILERYW 833
            +SIKKEACWTISNITAGNRAQIQ VI+ANI   L+ +LQ AEF  +KEAAWAI+NATSGGS +QI++LV  GCIKPLCDLL   D +IV V L GLENIL++GE + +     GIN Y  +I+E  GLDKIE LQ+H+N EIY+KA  ++E Y+
Sbjct:  352 ESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRN-GTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 504          
BLAST of CB290808 vs. ExPASy Swiss-Prot
Match: IMA5_HUMAN (Importin subunit alpha-6 OS=Homo sapiens GN=KPNA5 PE=1 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 1.366e-48
Identity = 97/155 (62.58%), Postives = 124/155 (80.00%), Query Frame = -3
Query:  372 KSIKKEACWTISNITAGNRAQIQAVIEANIILPLVHLLQHAEFEIKKEAAWAISNATSGGSHQQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAD-KEMGMNNGINVYAQMIDECDGLDKIENLQTHDNNEIYEKAVKILERYW 833
            +SI+KEACWT+SNITAGNRAQIQAVI+ANI   L+ +LQ AEF  +KEAAWAI+NATSGG+ +QI++LV+ GCIKPLCDLL   D +IV V L GLENIL++GE + K+ G+  GIN Y  +I+E  GLDKIE LQ+H+N EIY+KA  ++E Y+
Sbjct:  350 ESIRKEACWTVSNITAGNRAQIQAVIDANIFPVLIEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVALGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQESKQNGI--GINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 502          
BLAST of CB290808 vs. ExPASy Swiss-Prot
Match: IMA1_RAT (Importin subunit alpha-1 OS=Rattus norvegicus GN=Kpna1 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.784e-48
Identity = 96/154 (62.34%), Postives = 120/154 (77.92%), Query Frame = -3
Query:  372 KSIKKEACWTISNITAGNRAQIQAVIEANIILPLVHLLQHAEFEIKKEAAWAISNATSGGSHQQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEADKEMGMNNGINVYAQMIDECDGLDKIENLQTHDNNEIYEKAVKILERYW 833
            +SIKKEACWTISNITAGNRAQIQ VI+AN+   L+ +LQ AEF  +KEAAWAI+NATSGGS +QI++LV  GCIKPLCDLL   D +IV V L GLENIL++GE + +    +GIN Y  +I+E  GLDKIE LQ+H+N EIY+KA  ++E Y+
Sbjct:  352 ESIKKEACWTISNITAGNRAQIQTVIDANMFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDAKIVQVALNGLENILRLGEQEAKRN-GSGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 504          
BLAST of CB290808 vs. ExPASy Swiss-Prot
Match: IMA1_MOUSE (Importin subunit alpha-1 OS=Mus musculus GN=Kpna1 PE=1 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 1.784e-48
Identity = 96/154 (62.34%), Postives = 120/154 (77.92%), Query Frame = -3
Query:  372 KSIKKEACWTISNITAGNRAQIQAVIEANIILPLVHLLQHAEFEIKKEAAWAISNATSGGSHQQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEADKEMGMNNGINVYAQMIDECDGLDKIENLQTHDNNEIYEKAVKILERYW 833
            +SIKKEACWTISNITAGNRAQIQ VI+AN+   L+ +LQ AEF  +KEAAWAI+NATSGGS +QI++LV  GCIKPLCDLL   D +IV V L GLENIL++GE + +    +GIN Y  +I+E  GLDKIE LQ+H+N EIY+KA  ++E Y+
Sbjct:  352 ESIKKEACWTISNITAGNRAQIQTVIDANMFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDAKIVQVALNGLENILRLGEQEAKRN-GSGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 504          
BLAST of CB290808 vs. ExPASy Swiss-Prot
Match: IMA1_CHICK (Importin subunit alpha-1 OS=Gallus gallus GN=KPNA1 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.044e-48
Identity = 96/154 (62.34%), Postives = 120/154 (77.92%), Query Frame = -3
Query:  372 KSIKKEACWTISNITAGNRAQIQAVIEANIILPLVHLLQHAEFEIKKEAAWAISNATSGGSHQQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEADKEMGMNNGINVYAQMIDECDGLDKIENLQTHDNNEIYEKAVKILERYW 833
            +SIKKEACWTISNITAGNRAQIQ VI+A+I   L+++LQ AEF  +KEAAWAI+NATSGGS +QI++LV  GCIKPLCDLL   D +IV V L GLENIL++GE + +     GIN Y  +I+E  GLDKIE LQ+H+N EIY+KA  ++E Y+
Sbjct:  352 ESIKKEACWTISNITAGNRAQIQTVIDAHIFPALINILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALSGLENILRLGEQESKRS-GAGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 504          
BLAST of CB290808 vs. ExPASy Swiss-Prot
Match: IMA5_RAT (Importin subunit alpha-6 OS=Rattus norvegicus GN=Kpna5 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.973e-47
Identity = 95/155 (61.29%), Postives = 123/155 (79.35%), Query Frame = -3
Query:  372 KSIKKEACWTISNITAGNRAQIQAVIEANIILPLVHLLQHAEFEIKKEAAWAISNATSGGSHQQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAD-KEMGMNNGINVYAQMIDECDGLDKIENLQTHDNNEIYEKAVKILERYW 833
            +S++KEACWTISNITAGNR QIQAVI+ +I   L+ +LQ AEF  +KEAAWAI+NATSGG+ +QI++LV+ GCIKPLCDLL   D +IV V L GLENIL++GE + K+ G+  GIN Y  +I+E  GLDKIE LQ+H+N EIY+KA  ++ERY+
Sbjct:  350 ESVRKEACWTISNITAGNRMQIQAVIDGSIFPVLIEVLQKAEFRTRKEAAWAITNATSGGAPEQIRYLVTLGCIKPLCDLLTVMDSKIVQVALNGLENILRLGERESKQNGV--GINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIERYF 502          
BLAST of CB290808 vs. ExPASy Swiss-Prot
Match: IMA5_DANRE (Importin subunit alpha-6 OS=Danio rerio GN=kpna5 PE=2 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 5.740e-47
Identity = 92/154 (59.74%), Postives = 119/154 (77.27%), Query Frame = -3
Query:  372 KSIKKEACWTISNITAGNRAQIQAVIEANIILPLVHLLQHAEFEIKKEAAWAISNATSGGSHQQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEADKEMGMNNGINVYAQMIDECDGLDKIENLQTHDNNEIYEKAVKILERYW 833
            +SIKKEACWT+SNITAGNRAQIQAVI++N+   L+ +LQ AEF  +KEAAWAI+NATSGG+ +QI++LVS   IKP+CDLL   D +IV V L GLENIL++GE + +     GIN Y  +I+E  GLDKIE LQ+H+N EIY+KA  ++E Y+
Sbjct:  350 ESIKKEACWTVSNITAGNRAQIQAVIDSNVFPVLIEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLNTIKPMCDLLTVMDSKIVQVALNGLENILRLGEQESKQN-GTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 502          
BLAST of CB290808 vs. ExPASy Swiss-Prot
Match: IMAB_DICDI (Importin subunit alpha-B OS=Dictyostelium discoideum GN=DDB_G0272318 PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.721e-46
Identity = 92/153 (60.13%), Postives = 119/153 (77.78%), Query Frame = -3
Query:  375 KSIKKEACWTISNITAGNRAQIQAVIEANIILPLVHLLQHAEFEIKKEAAWAISNATSGGSHQQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEADKEMGMNNGINVYAQMIDECDGLDKIENLQTHDNNEIYEKAVKILERY 833
            ++I+KEACWTISNITAG++ QIQ VI+ANII  LV+LL +AEFEI+KEAAWAISNATS G+ QQI FLVSQGC+KPLCDLL   DPRI+ V LEG+ENIL  G+ + ++    G+N Y ++I++ DGL KI +LQ H N + +EK  +I+  Y
Sbjct:  337 RAIRKEACWTISNITAGDKNQIQQVIDANIIPSLVYLLANAEFEIQKEAAWAISNATSCGTPQQIHFLVSQGCVKPLCDLLKVSDPRIINVALEGIENILVAGKKEAQV---TGVNPYKKIIEDADGLGKIYDLQHHMNKDTFEKVSRIISTY 486          
BLAST of CB290808 vs. ExPASy Swiss-Prot
Match: IMA2_SCHPO (Importin subunit alpha-2 OS=Schizosaccharomyces pombe GN=imp1 PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.859e-46
Identity = 93/157 (59.24%), Postives = 122/157 (77.71%), Query Frame = -3
Query:  369 KSIKKEACWTISNITAGNRAQIQAVIEANIILPLVHLLQHAEFEIKKEAAWAISNATSGGSHQ--QIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEADKEMGMNNGINVYAQMIDECDGLDKIENLQTHDNNEIYEKAVKILERYWA 833
            ++I+KEACWTISNITAGN  QIQA+IE+N+I PLVHLL +A+++ KKEA WAISNATSGG  Q  QI++LVSQG IKPLCD+L   D +I+ V L+ +ENILKVGE D+ M + N IN YA  ++E  G+D I +LQ+  NN+IY KA  I+E+Y++
Sbjct:  346 ENIRKEACWTISNITAGNTQQIQAIIESNLIPPLVHLLSYADYKTKKEACWAISNATSGGLGQPDQIRYLVSQGVIKPLCDMLNGSDNKIIQVALDAIENILKVGEMDRTMDLEN-INQYAVYVEEAGGMDMIHDLQSSGNNDIYLKAYSIIEKYFS 501          
The following BLAST results are available for this feature:
BLAST of CB290808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
IMA1_HUMAN1.046e-4862.99Importin subunit alpha-1 OS=Homo sapiens GN=KPNA1 ... [more]
IMA1_BOVIN1.046e-4862.99Importin subunit alpha-1 OS=Bos taurus GN=KPNA1 PE... [more]
IMA5_HUMAN1.366e-4862.58Importin subunit alpha-6 OS=Homo sapiens GN=KPNA5 ... [more]
IMA1_RAT1.784e-4862.34Importin subunit alpha-1 OS=Rattus norvegicus GN=K... [more]
IMA1_MOUSE1.784e-4862.34Importin subunit alpha-1 OS=Mus musculus GN=Kpna1 ... [more]
IMA1_CHICK3.044e-4862.34Importin subunit alpha-1 OS=Gallus gallus GN=KPNA1... [more]
IMA5_RAT1.973e-4761.29Importin subunit alpha-6 OS=Rattus norvegicus GN=K... [more]
IMA5_DANRE5.740e-4759.74Importin subunit alpha-6 OS=Danio rerio GN=kpna5 P... [more]
IMAB_DICDI3.721e-4660.13Importin subunit alpha-B OS=Dictyostelium discoide... [more]
IMA2_SCHPO4.859e-4659.24Importin subunit alpha-2 OS=Schizosaccharomyces po... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01df09_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01df09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290808 ID=CB290808; Name=CB290808; organism=Citrus sinensis; type=EST; length=835bp
TTTTTTTTTTTTTTTATCCATGTAAGATTTTTCCTATGAACCTTTAAATT
GAGAAATACAATTCAAGTTGAAAACTGCAAGCCATCTCGAAAAGTTTTAA
CATATTCCATGAAAGTAAAAAGCCTATGTGCCAGACCAAAAATCCTGACC
CTTGGCGACAACGACAAGACAATATAGAAAATTCCAAAATTCACTGCAAT
GGGAGAAACAATGCCCTATAAAGCTAGTAAAGATATTCTCAAACTACTAC
TTCAACCAAATTTGAAGCCACCAGGTGGAATGTTGGGCTGGTTGGTTGCA
AAACCAAAACCCTGCTGCTGATTTCCAATACCACCTTCTTGGATAAGCTG
CTCTTCCTCCTCTTCCTCAGCCCAATATCTCTCCAAAATCTTCACAGCCT
TCTCATAAATCTCATTGTTGTCGTGGGTTTGCAAATTCTCAATCTTATCT
AATCCATCACACTCATCAATCATTTGGGCATAAACATTAATCCCATTATT
CATTCCCATTTCCTTGTCAGCCTCACCCACCTTCAAAATGTTCTCAAGAC
CCTCTAGACAAACTGTCACAATCCTTGGGTCCGGACAAACCAGAAGATCA
CAGAGAGGTTTGATGCAACCTTGGCTTACCAGGAATTGAATCTGTTGATG
AGATCCTCCAGACGTGGCATTTGAGATAGCCCATGCAGCCTCCTTCTTGA
TTTCGAACTCCGCATGTTGAAGAAGGTGCACAAGAGGAAGGATGATATTG
GCCTCAATAACAGCCTGTATCTGAGCTCTATTCCCAGCTGTAATATTTGA
GATCGTCCAACAAGCTTCTTTCTTGATGCTTTTTT
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