CB290808

Overview
NameCB290808
Unique NameCB290808
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length835
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290808 vs. ExPASy Swiss-Prot
Match: IMA1_YEAST (Importin subunit alpha OS=Saccharomyces cerevisiae GN=SRP1 PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.083e-45
Identity = 98/157 (62.42%), Postives = 123/157 (78.34%), Query Frame = -3
Query:  372 KSIKKEACWTISNITAGNRAQIQAVIEANIILPLVHLLQHAEFEIKKEAAWAISNATSGGSHQQ--IQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEADKE-MGMNNGINVYAQMIDECDGLDKIENLQTHDNNEIYEKAVKILERYW 833
            ++IKKEACWTISNITAGN  QIQAVI+AN+I PLV LL+ AE++ KKEA WAISNA+SGG  +   I++LVSQGCIKPLCDLL   D RI+ V L+ LENILK+GEADKE  G+N  IN  A  I++  G++KI N Q ++N++IYEKA KI+E Y+
Sbjct:  355 ENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLN--INENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 509          
BLAST of CB290808 vs. ExPASy Swiss-Prot
Match: IMA1_SCHPO (Importin subunit alpha-1 OS=Schizosaccharomyces pombe GN=cut15 PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.042e-44
Identity = 88/154 (57.14%), Postives = 118/154 (76.62%), Query Frame = -3
Query:  372 IKKEACWTISNITAGNRAQIQAVIEANIILPLVHLLQHAEFEIKKEAAWAISNATSGGSHQ--QIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEADKEMGMNNGINVYAQMIDECDGLDKIENLQTHDNNEIYEKAVKILERYW 827
            ++KEACWTISNITAGN +QIQ VIEANII PL+HLL  A+F+I+KEA WAISNATSGG+ +  QI++LV QG IKPLC+LL C D +I+ V L+G+ENIL+VGE D+    +  IN+YA  +++  G+D I   Q   N+EIY+KA  I+E+++
Sbjct:  348 VRKEACWTISNITAGNSSQIQYVIEANIIPPLIHLLTTADFKIQKEACWAISNATSGGARRPDQIRYLVEQGAIKPLCNLLACQDNKIIQVALDGIENILRVGELDRANNPDK-INLYAVYVEDAGGMDLIHECQNSSNSEIYQKAYNIIEKFF 500          
BLAST of CB290808 vs. ExPASy Swiss-Prot
Match: IMA4_MOUSE (Importin subunit alpha-4 OS=Mus musculus GN=Kpna4 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.598e-35
Identity = 71/155 (45.81%), Postives = 103/155 (66.45%), Query Frame = -3
Query:  369 KSIKKEACWTISNITAGNRAQIQAVIEANIILPLVHLLQHAEFEIKKEAAWAISNATSGGSHQQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEADKEMGMNNGINVYAQMIDECDGLDKIENLQTHDNNEIYEKAVKILERYWA 833
            + I KEA W +SNITAGN+ Q+QAVI+AN++  ++HLL   +F  +KEAAWAISN T  G   Q+ +L+ Q  I P C+LL   D ++V V L+GL NILK+ E   E          A +I+EC GL+KIE LQ H+N +IY+ A +I++++++
Sbjct:  340 EKINKEAVWFLSNITAGNQQQVQAVIDANLVPMIIHLLDKGDFGTQKEAAWAISNLTISGRKDQVAYLIQQNVIPPFCNLLTVKDAQVVQVVLDGLSNILKMAEDQAE--------TIANLIEECGGLEKIEQLQNHENEDIYKLAYEIIDQFFS 486          
BLAST of CB290808 vs. ExPASy Swiss-Prot
Match: IMA4_HUMAN (Importin subunit alpha-4 OS=Homo sapiens GN=KPNA4 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.467e-34
Identity = 70/155 (45.16%), Postives = 103/155 (66.45%), Query Frame = -3
Query:  369 KSIKKEACWTISNITAGNRAQIQAVIEANIILPLVHLLQHAEFEIKKEAAWAISNATSGGSHQQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEADKEMGMNNGINVYAQMIDECDGLDKIENLQTHDNNEIYEKAVKILERYWA 833
            + I KEA W +SNITAGN+ Q+QAVI+AN++  ++HLL   +F  +KEAAWAISN T  G   Q+ +L+ Q  I P C+LL   D ++V V L+GL NILK+ E + E            +I+EC GL+KIE LQ H+N +IY+ A +I++++++
Sbjct:  340 EKINKEAVWFLSNITAGNQQQVQAVIDANLVPMIIHLLDKGDFGTQKEAAWAISNLTISGRKDQVAYLIQQNVIPPFCNLLTVKDAQVVQVVLDGLSNILKMAEDEAE--------TIGNLIEECGGLEKIEQLQNHENEDIYKLAYEIIDQFFS 486          
BLAST of CB290808 vs. ExPASy Swiss-Prot
Match: IMA3_CAEEL (Importin subunit alpha-3 OS=Caenorhabditis elegans GN=ima-3 PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 8.047e-33
Identity = 69/156 (44.23%), Postives = 103/156 (66.03%), Query Frame = -3
Query:  369 KSIKKEACWTISNITAGNRAQIQAVIEANIILPLVHLLQHAEFEIKKEAAWAISNATSGGSHQQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV-GEADKEMGMNNGINVYAQMIDECDGLDKIENLQTHDNNEIYEKAVKILERYWA 833
            + I KEA W +SNITAGN+ Q+Q V +A I+  ++HLL   +F  +KEAAWAISN T  G   Q++ +V  G ++P C +L C D +I+ V L+G+ NILK+ GEA +++            I+EC GLDKIENLQ H+N +IY+ A +I++ +++
Sbjct:  333 EKINKEAVWFVSNITAGNQQQVQDVFDAGIMPMIIHLLDRGDFPTQKEAAWAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQVVLDGINNILKMAGEAAEQV---------TSEIEECGGLDKIENLQNHENEDIYKLAFEIIDNFFS 479          
BLAST of CB290808 vs. ExPASy Swiss-Prot
Match: IMA3_MOUSE (Importin subunit alpha-3 OS=Mus musculus GN=Kpna3 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.216e-32
Identity = 69/155 (44.52%), Postives = 103/155 (66.45%), Query Frame = -3
Query:  369 KSIKKEACWTISNITAGNRAQIQAVIEANIILPLVHLLQHAEFEIKKEAAWAISNATSGGSHQQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEADKEMGMNNGINVYAQMIDECDGLDKIENLQTHDNNEIYEKAVKILERYWA 833
            + I KEA W +SNITAGN+ Q+QAVI+A +I  ++H L   +F  +KEAAWAISN T  G   Q+++LV Q  I P C+LL   D ++V V L+GL+NIL +          +  +  A++I+EC GL+KIE LQ H+N +IY+ A +I+++Y++
Sbjct:  340 EKINKEAVWFLSNITAGNQQQVQAVIDAGLIPMIIHQLAKGDFGTQKEAAWAISNLTISGRKDQVEYLVQQNVIPPFCNLLSVKDSQVVQVVLDGLKNILIMA--------GDEASTIAEIIEECGGLEKIEVLQQHENEDIYKLAFEIIDQYFS 486          
BLAST of CB290808 vs. ExPASy Swiss-Prot
Match: IMA3_HUMAN (Importin subunit alpha-3 OS=Homo sapiens GN=KPNA3 PE=1 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 5.216e-32
Identity = 69/155 (44.52%), Postives = 103/155 (66.45%), Query Frame = -3
Query:  369 KSIKKEACWTISNITAGNRAQIQAVIEANIILPLVHLLQHAEFEIKKEAAWAISNATSGGSHQQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEADKEMGMNNGINVYAQMIDECDGLDKIENLQTHDNNEIYEKAVKILERYWA 833
            + I KEA W +SNITAGN+ Q+QAVI+A +I  ++H L   +F  +KEAAWAISN T  G   Q+++LV Q  I P C+LL   D ++V V L+GL+NIL +          +  +  A++I+EC GL+KIE LQ H+N +IY+ A +I+++Y++
Sbjct:  340 EKINKEAVWFLSNITAGNQQQVQAVIDAGLIPMIIHQLAKGDFGTQKEAAWAISNLTISGRKDQVEYLVQQNVIPPFCNLLSVKDSQVVQVVLDGLKNILIMA--------GDEASTIAEIIEECGGLEKIEVLQQHENEDIYKLAFEIIDQYFS 486          
BLAST of CB290808 vs. ExPASy Swiss-Prot
Match: IMA2_MOUSE (Importin subunit alpha-2 OS=Mus musculus GN=Kpna2 PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 7.532e-31
Identity = 68/154 (44.16%), Postives = 106/154 (68.83%), Query Frame = -3
Query:  369 SIKKEACWTISNITAGNRAQIQAVIEANIILPLVHLLQHAEFEIKKEAAWAISNATSGGSHQQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEADKEMGMNNGINVYAQMIDECDGLDKIENLQTHDNNEIYEKAVKILERYWA 830
            +I+KEA WT+SNITAG + QIQ V+   ++  LV +L  A+F+ +KEAAWAI+N TSGG+ +QI +LV  G I+PL +LL   D +I+ V L+ + NI +  E   ++G    +++   MI+EC GLDKIE LQ H+N  +Y+ ++ ++E+Y++
Sbjct:  350 NIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE---KLGETEKLSI---MIEECGGLDKIEALQRHENESVYKASLNLIEKYFS 497          
BLAST of CB290808 vs. ExPASy Swiss-Prot
Match: IMA2_HUMAN (Importin subunit alpha-2 OS=Homo sapiens GN=KPNA2 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 9.837e-31
Identity = 66/154 (42.86%), Postives = 105/154 (68.18%), Query Frame = -3
Query:  369 SIKKEACWTISNITAGNRAQIQAVIEANIILPLVHLLQHAEFEIKKEAAWAISNATSGGSHQQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEADKEMGMNNGINVYAQMIDECDGLDKIENLQTHDNNEIYEKAVKILERYWA 830
            +I+KEA WT+SNITAG + QIQ V+   ++  LV +L  A+F+ +KEA WA++N TSGG+ +QI +LV  G I+PL +LL   D +I+ V L+ + NI +  E   ++G    +++   MI+EC GLDKIE LQ H+N  +Y+ ++ ++E+Y++
Sbjct:  350 NIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKIILVILDAISNIFQAAE---KLGETEKLSI---MIEECGGLDKIEALQNHENESVYKASLSLIEKYFS 497          
BLAST of CB290808 vs. ExPASy Swiss-Prot
Match: IMA_DROME (Importin subunit alpha OS=Drosophila melanogaster GN=Pen PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 5.398e-29
Identity = 74/192 (38.54%), Postives = 107/192 (55.73%), Query Frame = -3
Query:  258 SIKKEACWTISNITAGNRAQIQAVIEANIILPLVHLLQHAEFEIKKEAAWAISNATSGGSHQQIQFLVSQ-GCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEADKEMGMNNGINVYAQMIDECDGLDKIENLQTHDNNEIYEKAVKILERYWAXXXXXXXXXXXXXXXXXXXXXXFATNQPNIPPGGFKF 830
            +I KEA WT+SNITAGN+ QIQAVI+A I   L  +L+  +F+ +KEAAWA++N T+ G+ +QI  L+ +   +KP  DLL   DPR + V   GL N+  + E   ++G   G      M++E  GLDK+E LQ H+N E+Y+KA  I++ Y++                          QP  P GG+ F
Sbjct:  339 NIVKEAAWTVSNITAGNQKQIQAVIQAGIFQQLRTVLEKGDFKAQKEAAWAVTNTTTSGTPEQIVDLIEKYKILKPFIDLLDTKDPRTIKVVQTGLSNLFALAE---KLG---GTENLCLMVEEMGGLDKLETLQQHENEEVYKKAYAIIDTYFSNGDDEAEQELAPQEVNGALEFN--ATQPKAPEGGYTF 522          
The following BLAST results are available for this feature:
BLAST of CB290808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
IMA1_YEAST1.083e-4562.42Importin subunit alpha OS=Saccharomyces cerevisiae... [more]
IMA1_SCHPO2.042e-4457.14Importin subunit alpha-1 OS=Schizosaccharomyces po... [more]
IMA4_MOUSE8.598e-3545.81Importin subunit alpha-4 OS=Mus musculus GN=Kpna4 ... [more]
IMA4_HUMAN1.467e-3445.16Importin subunit alpha-4 OS=Homo sapiens GN=KPNA4 ... [more]
IMA3_CAEEL8.047e-3344.23Importin subunit alpha-3 OS=Caenorhabditis elegans... [more]
IMA3_MOUSE5.216e-3244.52Importin subunit alpha-3 OS=Mus musculus GN=Kpna3 ... [more]
IMA3_HUMAN5.216e-3244.52Importin subunit alpha-3 OS=Homo sapiens GN=KPNA3 ... [more]
IMA2_MOUSE7.532e-3144.16Importin subunit alpha-2 OS=Mus musculus GN=Kpna2 ... [more]
IMA2_HUMAN9.837e-3142.86Importin subunit alpha-2 OS=Homo sapiens GN=KPNA2 ... [more]
IMA_DROME5.398e-2938.54Importin subunit alpha OS=Drosophila melanogaster ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01df09_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01df09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290808 ID=CB290808; Name=CB290808; organism=Citrus sinensis; type=EST; length=835bp
TTTTTTTTTTTTTTTATCCATGTAAGATTTTTCCTATGAACCTTTAAATT
GAGAAATACAATTCAAGTTGAAAACTGCAAGCCATCTCGAAAAGTTTTAA
CATATTCCATGAAAGTAAAAAGCCTATGTGCCAGACCAAAAATCCTGACC
CTTGGCGACAACGACAAGACAATATAGAAAATTCCAAAATTCACTGCAAT
GGGAGAAACAATGCCCTATAAAGCTAGTAAAGATATTCTCAAACTACTAC
TTCAACCAAATTTGAAGCCACCAGGTGGAATGTTGGGCTGGTTGGTTGCA
AAACCAAAACCCTGCTGCTGATTTCCAATACCACCTTCTTGGATAAGCTG
CTCTTCCTCCTCTTCCTCAGCCCAATATCTCTCCAAAATCTTCACAGCCT
TCTCATAAATCTCATTGTTGTCGTGGGTTTGCAAATTCTCAATCTTATCT
AATCCATCACACTCATCAATCATTTGGGCATAAACATTAATCCCATTATT
CATTCCCATTTCCTTGTCAGCCTCACCCACCTTCAAAATGTTCTCAAGAC
CCTCTAGACAAACTGTCACAATCCTTGGGTCCGGACAAACCAGAAGATCA
CAGAGAGGTTTGATGCAACCTTGGCTTACCAGGAATTGAATCTGTTGATG
AGATCCTCCAGACGTGGCATTTGAGATAGCCCATGCAGCCTCCTTCTTGA
TTTCGAACTCCGCATGTTGAAGAAGGTGCACAAGAGGAAGGATGATATTG
GCCTCAATAACAGCCTGTATCTGAGCTCTATTCCCAGCTGTAATATTTGA
GATCGTCCAACAAGCTTCTTTCTTGATGCTTTTTT
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