CB290809

Overview
NameCB290809
Unique NameCB290809
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290809 vs. ExPASy Swiss-Prot
Match: IMA7_PONAB (Importin subunit alpha-7 OS=Pongo abelii GN=KPNA6 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.478e-50
Identity = 109/210 (51.90%), Postives = 140/210 (66.67%), Query Frame = 1
Query:  193 VEIRKNKREDNLLKKRR----EGXXXXXXXXXXDASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAG-VVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTP 807
            +++RK KRE  L K+R                 D+  ++   +      MV+ ++S+D  LQL  T +FRKLLS E SPPIDEVI    VV RFVEFL R++   LQFEAAWALTN+ASGTS+ T++VIE GAVP+F++LL+S  +DV+EQAVWALGN+AGDS  CRD VL+   L PLL  L + ++L+M RNA W LSN CRGK P P
Sbjct:   36 IQLRKQKREQQLFKRRNVELINEEAAMFDSLLMDSYVSSTTGESVITREMVEMLFSDDSDLQLATTQKFRKLLSKEPSPPIDEVINTPRVVDRFVEFLKRNENCTLQFEAAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDYVLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPP 245          
BLAST of CB290809 vs. ExPASy Swiss-Prot
Match: IMA7_HUMAN (Importin subunit alpha-7 OS=Homo sapiens GN=KPNA6 PE=1 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.478e-50
Identity = 109/210 (51.90%), Postives = 140/210 (66.67%), Query Frame = 1
Query:  193 VEIRKNKREDNLLKKRR----EGXXXXXXXXXXDASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAG-VVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTP 807
            +++RK KRE  L K+R                 D+  ++   +      MV+ ++S+D  LQL  T +FRKLLS E SPPIDEVI    VV RFVEFL R++   LQFEAAWALTN+ASGTS+ T++VIE GAVP+F++LL+S  +DV+EQAVWALGN+AGDS  CRD VL+   L PLL  L + ++L+M RNA W LSN CRGK P P
Sbjct:   36 IQLRKQKREQQLFKRRNVELINEEAAMFDSLLMDSYVSSTTGESVITREMVEMLFSDDSDLQLATTQKFRKLLSKEPSPPIDEVINTPRVVDRFVEFLKRNENCTLQFEAAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDYVLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPP 245          
BLAST of CB290809 vs. ExPASy Swiss-Prot
Match: IMA3_MOUSE (Importin subunit alpha-3 OS=Mus musculus GN=Kpna3 PE=1 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.930e-50
Identity = 104/208 (50.00%), Postives = 137/208 (65.87%), Query Frame = 1
Query:  193 VEIRKNKREDNLLKKRREGXXXXXXXXXXDASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK-PPTPFE 813
            VE+RKNKR+++LLKKR             DA   A    LE+I   +Q   S++P +QL A    RKLLS +R+PPID++IK+G++P  V+ L R D P LQFEAAWALTN+ASGTS  T+ V++  AVP+F++LL S   +V EQAVWALGN+ GD P CRD V+S G + PLL+ +N    ++ LRN TW + N CR K PP P E
Sbjct:   34 VELRKNKRDEHLLKKRNVPQEESLEDSDVDADFKAQNVTLEAI---LQNATSDNPVVQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVKCLERDDNPSLQFEAAWALTNIASGTSAQTQAVVQSNAVPLFLRLLHSPHQNVCEQAVWALGNIIGDGPQCRDYVISLGVVKPLLSFINPSIPITFLRNVTWVIVNLCRNKDPPPPME 238          
BLAST of CB290809 vs. ExPASy Swiss-Prot
Match: IMA5_DANRE (Importin subunit alpha-6 OS=Danio rerio GN=kpna5 PE=2 SV=2)

HSP 1 Score: 198.749 bits (504), Expect = 3.292e-50
Identity = 110/213 (51.64%), Postives = 140/213 (65.73%), Query Frame = 1
Query:  193 VEIRKNKREDNLLKKRR-------EGXXXXXXXXXXDASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKA-GVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTP 807
            +++RK KRE+ L K+R        E            +S   +  +      ++Q ++SEDP  QL AT +FRKLLS E +PPIDEVI   GVV RFVEFL R D   LQFEAAWALTN+ASGT +HT+VVIE GAVP+F++LL+S  +DV+EQAVWALGN+AGD+  CRD VL+ G L  L   L + ++L+  RNA W LSN CRGK P P
Sbjct:   33 IQLRKQKREEQLFKRRNVSLPPGDESMLECPIQDPDVSSTVPVSGEGVITQDVIQMIFSEDPDQQLIATQKFRKLLSKEPNPPIDEVIGTPGVVNRFVEFLRRSDNCTLQFEAAWALTNIASGTFQHTKVVIETGAVPIFIELLNSEYEDVQEQAVWALGNIAGDNAECRDYVLNCGILPSLQQLLAKSNRLTTTRNAVWALSNLCRGKNPPP 245          
BLAST of CB290809 vs. ExPASy Swiss-Prot
Match: IMA1_CHICK (Importin subunit alpha-1 OS=Gallus gallus GN=KPNA1 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.292e-50
Identity = 108/215 (50.23%), Postives = 139/215 (64.65%), Query Frame = 1
Query:  193 VEIRKNKREDNLLKKRREGXXXXXXXXXX-------DASQNAIEKKLESI--PSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKA-GVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTP 807
            +++RK KRE+ L K+R                    +A  N +E    ++    M++ ++S  P  QL AT +FRKLLS E +PPIDEVI   GVV RFVEFL R +   LQFEAAW LTN+ASG S  TR+VI+ GAVP+F++LLSS  +DV+EQAVWALGN+AGDS  CRD VL    L PLL  L++ ++++M RNA W LSN CRGK P P
Sbjct:   33 LQLRKQKREEQLFKRRNVATAEEEAEEEVMSDGGFHEAQMNNMEMTSSAVITSDMIEMIFSNSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFEAAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLLSKQNRITMTRNAVWALSNLCRGKNPPP 247          
BLAST of CB290809 vs. ExPASy Swiss-Prot
Match: IMA5_RAT (Importin subunit alpha-6 OS=Rattus norvegicus GN=Kpna5 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 5.615e-50
Identity = 108/213 (50.70%), Postives = 138/213 (64.79%), Query Frame = 1
Query:  193 VEIRKNKREDNLLKKRREGXXXXXXXXXXDASQNAIEKKLESIPS-------MVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVI-KAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTP 807
            +++RK KRE+ L K+R                Q+        IP        M+Q ++S +   QL AT +FRKLLS E +PPID+VI K GVV RFV+FL R++   LQFEAAWALTN+ASGT  HT+VVIE GAVP+F++LL+S  +DV+EQAVWALGN+AGD+  CRD VL+   L PLL  L   ++L+  RNA W LSN CRGK P P
Sbjct:   33 IQLRKQKREEQLFKRRNVSLPRNDDCMLESPIQDPDVSSTVPIPEEDMITADMIQMIFSNNAEQQLTATQKFRKLLSKEPNPPIDQVIQKPGVVQRFVKFLERNENCTLQFEAAWALTNIASGTFLHTKVVIETGAVPIFIRLLTSEHEDVQEQAVWALGNIAGDNAECRDFVLNCEILPPLLELLTNSNRLTTTRNAVWALSNLCRGKNPPP 245          
BLAST of CB290809 vs. ExPASy Swiss-Prot
Match: IMA3_HUMAN (Importin subunit alpha-3 OS=Homo sapiens GN=KPNA3 PE=1 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 7.334e-50
Identity = 103/208 (49.52%), Postives = 137/208 (65.87%), Query Frame = 1
Query:  193 VEIRKNKREDNLLKKRREGXXXXXXXXXXDASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK-PPTPFE 813
            VE+RKNKR+++LLKKR             DA   A    LE+I   +Q   S++P +QL A    RKLLS +R+PPID++IK+G++P  V+ L R D P LQFEAAWALTN+ASGTS  T+ V++  AVP+F++LL S   +V EQAVWALGN+ GD P CRD V+S G + PLL+ ++    ++ LRN TW + N CR K PP P E
Sbjct:   34 VELRKNKRDEHLLKKRNVPQEESLEDSDVDADFKAQNVTLEAI---LQNATSDNPVVQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVKCLERDDNPSLQFEAAWALTNIASGTSAQTQAVVQSNAVPLFLRLLRSPHQNVCEQAVWALGNIIGDGPQCRDYVISLGVVKPLLSFISPSIPITFLRNVTWVIVNLCRNKDPPPPME 238          
BLAST of CB290809 vs. ExPASy Swiss-Prot
Match: IMA5_HUMAN (Importin subunit alpha-6 OS=Homo sapiens GN=KPNA5 PE=1 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 1.634e-49
Identity = 109/213 (51.17%), Postives = 138/213 (64.79%), Query Frame = 1
Query:  193 VEIRKNKREDNLLKKRREGXXXXXXXXXXDASQNAIEKKLESIPS-------MVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVI-KAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTP 807
            +++RK KRE+ L K+R                Q+        IP        MVQ ++S +   QL AT +FRKLLS E +PPID+VI K GVV RFV+FL R++   LQFEAAWALTN+ASGT  HT+VVIE GAVP+F++LL+S  +DV+EQAVWALGN+AGD+  CRD VL+   L PLL  L   ++L+  RNA W LSN CRGK P P
Sbjct:   33 IQLRKQKREEQLFKRRNVYLPRNDESMLESPIQDPDISSTVPIPEEEVVTTDMVQMIFSNNADQQLTATQKFRKLLSKEPNPPIDQVIQKPGVVQRFVKFLERNENCTLQFEAAWALTNIASGTFLHTKVVIETGAVPIFIKLLNSEHEDVQEQAVWALGNIAGDNAECRDFVLNCEILPPLLELLTNSNRLTTTRNAVWALSNLCRGKNPPP 245          
BLAST of CB290809 vs. ExPASy Swiss-Prot
Match: IMA1_PONAB (Importin subunit alpha-1 OS=Pongo abelii GN=KPNA1 PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.787e-49
Identity = 105/215 (48.84%), Postives = 138/215 (64.19%), Query Frame = 1
Query:  193 VEIRKNKREDNLLKKRREGXXXXXXXXXXDASQNAIEKKLESIP---------SMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKA-GVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTP 807
            +++RK KRE+ L K+R              +     E ++ ++           M++ ++S+ P  QL AT +FRKLLS E +PPIDEVI   GVV RFVEFL R +   LQFE+AW LTN+ASG S  TR+VI+ GAVP+F++LLSS  +DV+EQAVWALGN+AGDS  CRD VL    L PLL   ++ ++L+M RNA W LSN CRGK P P
Sbjct:   33 LQLRKQKREEQLFKRRNVATAEEETEEEVMSDGGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP 247          
BLAST of CB290809 vs. ExPASy Swiss-Prot
Match: IMA1_HUMAN (Importin subunit alpha-1 OS=Homo sapiens GN=KPNA1 PE=1 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 2.787e-49
Identity = 105/215 (48.84%), Postives = 138/215 (64.19%), Query Frame = 1
Query:  193 VEIRKNKREDNLLKKRREGXXXXXXXXXXDASQNAIEKKLESIP---------SMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKA-GVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTP 807
            +++RK KRE+ L K+R              +     E ++ ++           M++ ++S+ P  QL AT +FRKLLS E +PPIDEVI   GVV RFVEFL R +   LQFE+AW LTN+ASG S  TR+VI+ GAVP+F++LLSS  +DV+EQAVWALGN+AGDS  CRD VL    L PLL   ++ ++L+M RNA W LSN CRGK P P
Sbjct:   33 LQLRKQKREEQLFKRRNVATAEEETEEEVMSDGGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP 247          
The following BLAST results are available for this feature:
BLAST of CB290809 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
IMA7_PONAB1.478e-5051.90Importin subunit alpha-7 OS=Pongo abelii GN=KPNA6 ... [more]
IMA7_HUMAN1.478e-5051.90Importin subunit alpha-7 OS=Homo sapiens GN=KPNA6 ... [more]
IMA3_MOUSE1.930e-5050.00Importin subunit alpha-3 OS=Mus musculus GN=Kpna3 ... [more]
IMA5_DANRE3.292e-5051.64Importin subunit alpha-6 OS=Danio rerio GN=kpna5 P... [more]
IMA1_CHICK3.292e-5050.23Importin subunit alpha-1 OS=Gallus gallus GN=KPNA1... [more]
IMA5_RAT5.615e-5050.70Importin subunit alpha-6 OS=Rattus norvegicus GN=K... [more]
IMA3_HUMAN7.334e-5049.52Importin subunit alpha-3 OS=Homo sapiens GN=KPNA3 ... [more]
IMA5_HUMAN1.634e-4951.17Importin subunit alpha-6 OS=Homo sapiens GN=KPNA5 ... [more]
IMA1_PONAB2.787e-4948.84Importin subunit alpha-1 OS=Pongo abelii GN=KPNA1 ... [more]
IMA1_HUMAN2.787e-4948.84Importin subunit alpha-1 OS=Homo sapiens GN=KPNA1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01df09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01df09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290809 ID=CB290809; Name=CB290809; organism=Citrus sinensis; type=EST; length=839bp
GTTCACCCGATCCCTTCTTCCCTCACTCTCCCTTAATCTCTCGTTCAATT
CAAGATTTTGTAAAAAAAGCGGAAGAAAGGCCGAAAGAACGACATGTCGT
TGAGACCGAGCACGCGAGCGGAGGTGAGGAAGAAGGGGTACAAAACGGGA
GTCGATGCGGATGAGGCGCGGCGGCGGAGAGAGGACAATCTGGTGGAGAT
CAGAAAGAACAAAAGGGAAGATAATTTGTTGAAGAAACGACGCGAAGGTC
TCCTGCTTCAGCCTCAGCAACAACTCCTCGATGCCTCGCAAAACGCCATT
GAAAAGAAGTTGGAAAGTATTCCTTCTATGGTACAAGGAGTGTGGTCTGA
GGATCCTGCATTACAGTTGGAAGCAACTACACAGTTTAGAAAGCTGTTAT
CAATTGAACGCAGCCCTCCAATTGATGAAGTAATTAAAGCTGGTGTTGTC
CCACGCTTTGTGGAGTTTCTAGGAAGGCATGATATGCCTCAACTACAATT
TGAGGCTGCATGGGCATTGACCAATGTTGCATCAGGGACATCAGAGCATA
CACGAGTTGTCATTGAGCATGGTGCTGTCCCCATGTTTGTCCAACTTCTT
AGCTCTGGCAGCGATGATGTCAGAGAGCAGGCAGTATGGGCTTTGGGTAA
TGTTGCTGGTGACTCCCCTAGTTGTAGAGATCTTGTTCTTTCTAGCGGTG
CTCTCATGCCATTACTAGCTCAGTTAAATGAACATTCAAAACTATCCATG
CTGAGGAATGCAACATGGACTTTATCGAACTTCTGTCGTGGCAAACCTCC
AACACCATTTGAACAGGGTGAAACCTGCTCTGCCAATTC
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