CB290809

Overview
NameCB290809
Unique NameCB290809
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290809 vs. ExPASy Swiss-Prot
Match: IMA8_HUMAN (Importin subunit alpha-8 OS=Homo sapiens GN=KPNA7 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.189e-45
Identity = 100/205 (48.78%), Postives = 131/205 (63.90%), Query Frame = 1
Query:  193 VEIRKNKREDNLLKKRREGXXXXXXXXXXDASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTP 807
            +E+RK K+++  LK+R              A   A+   L  I   ++GV S DP L  +AT   RK+LS E++PP+  VI+AG++PR VEFL     P LQFEAAWALTN+ASGTSE TR V+E GA+   ++LLSS +  V EQAVWALGN+AGD P  RD V++S A+  LLA ++    ++ LRN TWTLSN CR K P P
Sbjct:   33 LELRKAKKDEQTLKRRNITSFCPDTPSEKTAKGVAVSLTLGEI---IKGVNSSDPVLCFQATQTARKMLSQEKNPPLKLVIEAGLIPRMVEFLKSSLYPCLQFEAAWALTNIASGTSEQTRAVVEGGAIQPLIELLSSSNVAVCEQAVWALGNIAGDGPEFRDNVITSNAIPHLLALISPTLPITFLRNITWTLSNLCRNKNPYP 234          
BLAST of CB290809 vs. ExPASy Swiss-Prot
Match: IMA3_CAEEL (Importin subunit alpha-3 OS=Caenorhabditis elegans GN=ima-3 PE=1 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 6.014e-44
Identity = 99/227 (43.61%), Postives = 128/227 (56.39%), Query Frame = 1
Query:  127 RKKGYKTGVXXXXXXXXXXXNLVEIRKNKREDNLLKKRREGXXXXXXXXXXDASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTP 807
            R+  YK               +V IRK+KRE+ + K+R                    +  L  +   V    S DPA QL A  Q RK+LS +R+PPID++I +G++P  V+ L   D P LQFEAAWALTN+ASGTSE T+ V+  GAVP+F+QLLS G+ +V EQ+VWALGN+ GD P  RD  L  G L PLL  +N    +  LRN TW + N CR K P P
Sbjct:    5 RQAYYKNNAKEQIGKEKRNEEVVSIRKDKREEAISKRRNINTQIEDDSETSTTPPGPFDANLLRLT--VAAAQSSDPAEQLTAVQQARKMLSTDRNPPIDDLIGSGILPVLVQCLSSTD-PNLQFEAAWALTNIASGTSEQTQAVVNAGAVPLFLQLLSCGNLNVCEQSVWALGNIIGDGPHFRDYCLELGILQPLLQFINPEIPIGFLRNVTWVIVNLCRCKDPAP 228          
BLAST of CB290809 vs. ExPASy Swiss-Prot
Match: IMA_DROME (Importin subunit alpha OS=Drosophila melanogaster GN=Pen PE=1 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 2.527e-42
Identity = 94/209 (44.98%), Postives = 127/209 (60.77%), Query Frame = 1
Query:  193 VEIRKNKREDNLLKKRREGXXXXXXXXXXDASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPT-PFEQ 816
            +E+RK+K+ED + K+R                Q+ ++  ++ I   V  + SED   Q       RK+LS ER+PPID +I  G+VP  + FL   +   LQFEAAWALTN+ASGTS+ TR VIEH AVP FV LL S S ++ EQAVWALGN+AGD  + RD+V+    +  +L  +N  + LS LRN  W +SN CR K P+ PF+Q
Sbjct:   32 IELRKSKKEDQMFKRRNINDEDLTSPLKELNGQSPVQLSVDEI---VAAMNSEDQERQFLGMQSARKMLSRERNPPIDLMIGHGIVPICIRFLQNTNNSMLQFEAAWALTNIASGTSDQTRCVIEHNAVPHFVALLQSKSMNLAEQAVWALGNIAGDGAAARDIVIHHNVIDGILPLINNETPLSFLRNIVWLMSNLCRNKNPSPPFDQ 237          
BLAST of CB290809 vs. ExPASy Swiss-Prot
Match: IMA1A_DICDI (Probable importin subunit alpha-A OS=Dictyostelium discoideum GN=DDB_G0273149 PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.365e-40
Identity = 95/263 (36.12%), Postives = 144/263 (54.75%), Query Frame = 1
Query:  115 RAEVRKKGYKTGVXXXXXXXXXXXNLVEIRKNKREDNLLKKR-----------REGXXXXXXXXXXDASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLL-SSGSDDVREQAVWALGNVAGDSPSCRDLVLSSG---ALMPLL----------AQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQGETC 828
            + + RKK +K  +           N + IRKN RE+ +LK+R           +                  +E K++++P +V  + S D A    +  QFRKLLSI   PPID+VI+ G++P+  + L  ++ P++QFE+AWALTN+ASG +  T+ V+E G+VP+F+QLL +  +D+V+EQ  WALGN+AGD+   R+ +L  G   AL+PLL             N   K+ +++N  WT+SN CRGKP   F     C
Sbjct:    6 KQDSRKKEFKKSLDSETARRKREENSIGIRKNAREELMLKRRGIVQPNPSTSYQIIVPPEVQEQFQKYENETMENKIKNLPGLVTALNSNDQAYVYSSLVQFRKLLSIHAYPPIDQVIECGIIPKLNQLLQCNN-PKVQFESAWALTNIASGNNRQTQTVMESGSVPIFIQLLCAETTDEVKEQCAWALGNIAGDTVDSRNYLLKYGAMNALIPLLHYGEDNGATTTSANSERKIGLIQNVVWTISNLCRGKPQPDFSVVSQC 267          

HSP 2 Score: 73.9442 bits (180), Expect = 1.223e-12
Identity = 43/121 (35.54%), Postives = 67/121 (55.37%), Query Frame = 1
Query:  421 IDEVIKAGVVPRFVEFLGRHDMPQLQFEAAW-ALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSN 780
            I  VI +GVVPR V+ L   D   + F  A  A+ N+ +G S  T++VI++  V +  +LL+     +R+++ WAL N+    PS  D+V+S+   +  L  L  HS+  + R A W LSN
Sbjct:  303 IQAVIDSGVVPRLVKLLEYPD--SIVFTPALRAVGNIVTGESSQTQIVIDNNGVELITRLLAVQKKSIRKESCWALSNITAGEPSQIDVVVSNPKTVTTLISLLSHSEHDIKREACWALSN 421          
BLAST of CB290809 vs. ExPASy Swiss-Prot
Match: IMA2_CAEEL (Importin subunit alpha-2 OS=Caenorhabditis elegans GN=ima-2 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.304e-22
Identity = 71/213 (33.33%), Postives = 108/213 (50.70%), Query Frame = 1
Query:  193 VEIRKNKREDNLLKKRR-----EGXXXXXXXXXXDA---SQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKL--SMLRNATWTLSNFCRGKPP 801
            VEIRK K  D ++K+R      EG          +     Q++     + I +++    SED  ++       RK LS  ++PPIDEVI  G++   V+ L   +  ++Q+EAAWALTN+ SG++E T   +E G     + L    S  + EQA+WA+ N+AGDS   RD V+    +  L+  + +  +L  S +R   W  SN CR K P
Sbjct:   43 VEIRKQKGADMMMKRRNIVDVDEGGNSESELEEPEKISHQQSSTRLSNDEIRAILSNNPSEDDMVR--CFESLRKSLSKTKNPPIDEVIHCGLLQALVQALSVEN-ERVQYEAAWALTNIVSGSTEQTIAAVEAGVTIPLIHLSVHQSAQISEQALWAVANIAGDSSQLRDYVIKCHGVEALMHLMEKVDQLGDSHVRTIAWAFSNMCRHKNP 252          
BLAST of CB290809 vs. ExPASy Swiss-Prot
Match: IMA2_ORYSJ (Importin subunit alpha-2 OS=Oryza sativa subsp. japonica GN=Os01g0158000 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.194e-21
Identity = 63/171 (36.84%), Postives = 92/171 (53.80%), Query Frame = 1
Query:  292 NAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDD-VREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPP 801
            +A+E+   ++    +GV  +    ++EA    R+LLS    P +D  IKAG VP  V++L      +   EAAW LTN+A+G  E T+ ++   A+P+ +  L   S   V EQ  WA+GNVAG+    R  +L+ GAL P L +L   SK S  R A W +SN  +G  P
Sbjct:   89 HAVEELKSALSIQGKGVQKK----KIEALRDLRRLLSQPEVPLVDTAIKAGAVPLLVQYLSFGSSDEQLLEAAWCLTNIAAGEPEETKSLLP--ALPLLIAHLGEKSSTLVAEQCAWAIGNVAGEGAELRSTLLAQGALRP-LTRLMFSSKGSTARTAAWAMSNLIKGPDP 252          
The following BLAST results are available for this feature:
BLAST of CB290809 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
IMA8_HUMAN3.189e-4548.78Importin subunit alpha-8 OS=Homo sapiens GN=KPNA7 ... [more]
IMA3_CAEEL6.014e-4443.61Importin subunit alpha-3 OS=Caenorhabditis elegans... [more]
IMA_DROME2.527e-4244.98Importin subunit alpha OS=Drosophila melanogaster ... [more]
IMA1A_DICDI2.365e-4036.12Probable importin subunit alpha-A OS=Dictyostelium... [more]
IMA2_CAEEL1.304e-2233.33Importin subunit alpha-2 OS=Caenorhabditis elegans... [more]
IMA2_ORYSJ4.194e-2136.84Importin subunit alpha-2 OS=Oryza sativa subsp. ja... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01df09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01df09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290809 ID=CB290809; Name=CB290809; organism=Citrus sinensis; type=EST; length=839bp
GTTCACCCGATCCCTTCTTCCCTCACTCTCCCTTAATCTCTCGTTCAATT
CAAGATTTTGTAAAAAAAGCGGAAGAAAGGCCGAAAGAACGACATGTCGT
TGAGACCGAGCACGCGAGCGGAGGTGAGGAAGAAGGGGTACAAAACGGGA
GTCGATGCGGATGAGGCGCGGCGGCGGAGAGAGGACAATCTGGTGGAGAT
CAGAAAGAACAAAAGGGAAGATAATTTGTTGAAGAAACGACGCGAAGGTC
TCCTGCTTCAGCCTCAGCAACAACTCCTCGATGCCTCGCAAAACGCCATT
GAAAAGAAGTTGGAAAGTATTCCTTCTATGGTACAAGGAGTGTGGTCTGA
GGATCCTGCATTACAGTTGGAAGCAACTACACAGTTTAGAAAGCTGTTAT
CAATTGAACGCAGCCCTCCAATTGATGAAGTAATTAAAGCTGGTGTTGTC
CCACGCTTTGTGGAGTTTCTAGGAAGGCATGATATGCCTCAACTACAATT
TGAGGCTGCATGGGCATTGACCAATGTTGCATCAGGGACATCAGAGCATA
CACGAGTTGTCATTGAGCATGGTGCTGTCCCCATGTTTGTCCAACTTCTT
AGCTCTGGCAGCGATGATGTCAGAGAGCAGGCAGTATGGGCTTTGGGTAA
TGTTGCTGGTGACTCCCCTAGTTGTAGAGATCTTGTTCTTTCTAGCGGTG
CTCTCATGCCATTACTAGCTCAGTTAAATGAACATTCAAAACTATCCATG
CTGAGGAATGCAACATGGACTTTATCGAACTTCTGTCGTGGCAAACCTCC
AACACCATTTGAACAGGGTGAAACCTGCTCTGCCAATTC
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