CB290810

Overview
NameCB290810
Unique NameCB290810
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length817
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290810 vs. ExPASy Swiss-Prot
Match: PK3_DICDI (Protein kinase 3 OS=Dictyostelium discoideum GN=pkgC PE=3 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.620e-22
Identity = 52/120 (43.33%), Postives = 75/120 (62.50%), Query Frame = -3
Query:  402 SNSFVGTEEYIAPEIIAGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQKTFANILHKDLKFPSSTPTSLHAKQLMYRLLHRDPKSRLGSHEGANEIKKHPFFKGVNWALV--RCMNPP 755
            + +F GT EY+APEII GAGH  A DWW++GILL+EML G +PF    R   + +++  +L+ P     S  A+ L+ +LL  DP  RLGS +G  EI  HPFF+ + W ++  + + PP
Sbjct:  662 ATTFCGTPEYLAPEIITGAGHGKAADWWSVGILLFEMLTGRSPFLASNRNDMYKSMIQGNLRMPMF--LSSDAQDLLEKLLVPDPNKRLGSTQGFEEISSHPFFELIPWRMLESKMITPP 779          
BLAST of CB290810 vs. ExPASy Swiss-Prot
Match: GAD8_SCHPO (Serine/threonine-protein kinase gad8 OS=Schizosaccharomyces pombe GN=gad8 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.620e-22
Identity = 57/131 (43.51%), Postives = 77/131 (58.78%), Query Frame = -3
Query:  369 SNSFVGTEEYIAPEIIAGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQKTFANILHKDLKFPSSTPTSLHAKQLMYRLLHRDPKSRLGSHEGANEIKKHPFFKGVNW--ALVRCMNPPELDAPLFATDT 755
            +N+F GT EY+APE++ G G+T  VDWW LG+LLYEM+ G  PF  +   + +  IL   L+FP +      AK L+  LL R P+ RLGS  GA EIK HPFF  ++W     + + PP   +   A DT
Sbjct:  385 TNTFCGTPEYLAPELLLGHGYTKVVDWWTLGVLLYEMITGLPPFYDENINEMYRKILQDPLRFPDNIDEK--AKDLLSGLLTRAPEKRLGS-GGAQEIKNHPFFDDIDWKKLCAKKIQPPFKPSVESAIDT 512          
BLAST of CB290810 vs. ExPASy Swiss-Prot
Match: PKN2_HUMAN (Serine/threonine-protein kinase N2 OS=Homo sapiens GN=PKN2 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.762e-22
Identity = 49/121 (40.50%), Postives = 82/121 (67.77%), Query Frame = -3
Query:  402 SNSFVGTEEYIAPEIIAGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQKTFANILHKDLKFPSSTPTSLHAKQLMYRLLHRDPKSRLG-SHEGANEIKKHPFFKGVNWALV--RCMNPP 755
            +++F GT E++APE++    +T AVDWW LG+L+YEML G +PF G   ++ F +I++ ++++P    T   A  +M RLL R+P+ RLG S + A ++KKHPFF+ ++W+ +  + + PP
Sbjct:  814 TSTFCGTPEFLAPEVLTETSYTRAVDWWGLGVLIYEMLVGESPFPGDDEEEVFDSIVNDEVRYPRFLST--EAISIMRRLLRRNPERRLGASEKDAEDVKKHPFFRLIDWSALMDKKVKPP 932          
BLAST of CB290810 vs. ExPASy Swiss-Prot
Match: CBK1_ASHGO (Serine/threonine-protein kinase CBK1 OS=Ashbya gossypii GN=CBK1 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.762e-22
Identity = 59/130 (45.38%), Postives = 78/130 (60.00%), Query Frame = -3
Query:  369 SFVGTEEYIAPEIIAGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQKTFANILH--KDLKFPSSTPTSLHAKQLMYRLL-HRDPKSRLGSHEGANEIKKHPFFKGVNWALVRCMNPPELDAPLFATDT 749
            S VGT +YIAPEI    G+    DWW+LG ++YE L G+ PF  +T Q+T+  I++  + L FP     S  A+ L+ RLL H D   RLG H GANEIK HPFF+GV+W  +R +  P +      TDT
Sbjct:  530 STVGTPDYIAPEIFLYQGYGQECDWWSLGAIMYECLIGWPPFCSETPQETYRKIMNFEQTLVFPDDIHISYEAEDLIRRLLSHAD--ERLGRH-GANEIKNHPFFRGVDWETIRQVGAPYIPKLSSVTDT 656          
BLAST of CB290810 vs. ExPASy Swiss-Prot
Match: PKN1_MOUSE (Serine/threonine-protein kinase N1 OS=Mus musculus GN=Pkn1 PE=1 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 3.608e-22
Identity = 52/121 (42.98%), Postives = 79/121 (65.29%), Query Frame = -3
Query:  402 SNSFVGTEEYIAPEIIAGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQKTFANILHKDLKFPSSTPTSLHAKQLMYRLLHRDPKSRLGSHE-GANEIKKHPFFKGVNW--ALVRCMNPP 755
            +++F GT E++APE++    +T AVDWW LG+LLYEML G +PF G   ++ F +I++ ++++P     S  A  +M RLL R+P+ RLGS E  A ++KK PFF+ + W   L R + PP
Sbjct:  776 TSTFCGTPEFLAPEVLTDTSYTRAVDWWGLGVLLYEMLVGESPFPGDDEEEVFDSIVNDEVRYPRF--LSAEAIGIMRRLLRRNPERRLGSTERDAEDVKKQPFFRSLGWDVLLARRLPPP 894          
BLAST of CB290810 vs. ExPASy Swiss-Prot
Match: KS6B1_RAT (Ribosomal protein S6 kinase beta-1 OS=Rattus norvegicus GN=Rps6kb1 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.608e-22
Identity = 55/121 (45.45%), Postives = 77/121 (63.64%), Query Frame = -3
Query:  402 SNSFVGTEEYIAPEIIAGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQKTFANILHKDLKFPSSTPTSLHAKQLMYRLLHRDPKSRLGSHEG-ANEIKKHPFFKGVNW--ALVRCMNPP 755
            +++F GT EY+APEI+  +GH  AVDWW+LG L+Y+ML G  PF G+ R+KT   IL   L  P     +  A+ L+ +LL R+  SRLG+  G A E++ HPFF+ +NW   L R + PP
Sbjct:  250 THTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKKTIDKILKCKLNLPPY--LTQEARDLLKKLLKRNAASRLGAGPGDAGEVQAHPFFRHINWEELLARKVEPP 368          
BLAST of CB290810 vs. ExPASy Swiss-Prot
Match: KS6B1_RABIT (Ribosomal protein S6 kinase beta-1 OS=Oryctolagus cuniculus GN=RPS6KB1 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.608e-22
Identity = 55/121 (45.45%), Postives = 77/121 (63.64%), Query Frame = -3
Query:  402 SNSFVGTEEYIAPEIIAGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQKTFANILHKDLKFPSSTPTSLHAKQLMYRLLHRDPKSRLGSHEG-ANEIKKHPFFKGVNW--ALVRCMNPP 755
            +++F GT EY+APEI+  +GH  AVDWW+LG L+Y+ML G  PF G+ R+KT   IL   L  P     +  A+ L+ +LL R+  SRLG+  G A E++ HPFF+ +NW   L R + PP
Sbjct:  250 THTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKKTIDKILKCKLNLPPY--LTQEARDLLKKLLKRNAASRLGAGPGDAGEVQAHPFFRHINWEELLARKVEPP 368          
BLAST of CB290810 vs. ExPASy Swiss-Prot
Match: KS6B1_MOUSE (Ribosomal protein S6 kinase beta-1 OS=Mus musculus GN=Rps6kb1 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.608e-22
Identity = 55/121 (45.45%), Postives = 77/121 (63.64%), Query Frame = -3
Query:  402 SNSFVGTEEYIAPEIIAGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQKTFANILHKDLKFPSSTPTSLHAKQLMYRLLHRDPKSRLGSHEG-ANEIKKHPFFKGVNW--ALVRCMNPP 755
            +++F GT EY+APEI+  +GH  AVDWW+LG L+Y+ML G  PF G+ R+KT   IL   L  P     +  A+ L+ +LL R+  SRLG+  G A E++ HPFF+ +NW   L R + PP
Sbjct:  250 THTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKKTIDKILKCKLNLPPY--LTQEARDLLKKLLKRNAASRLGAGPGDAGEVQAHPFFRHINWEELLARKVEPP 368          
BLAST of CB290810 vs. ExPASy Swiss-Prot
Match: KS6B1_HUMAN (Ribosomal protein S6 kinase beta-1 OS=Homo sapiens GN=RPS6KB1 PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 3.608e-22
Identity = 55/121 (45.45%), Postives = 77/121 (63.64%), Query Frame = -3
Query:  402 SNSFVGTEEYIAPEIIAGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQKTFANILHKDLKFPSSTPTSLHAKQLMYRLLHRDPKSRLGSHEG-ANEIKKHPFFKGVNW--ALVRCMNPP 755
            +++F GT EY+APEI+  +GH  AVDWW+LG L+Y+ML G  PF G+ R+KT   IL   L  P     +  A+ L+ +LL R+  SRLG+  G A E++ HPFF+ +NW   L R + PP
Sbjct:  250 THTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKKTIDKILKCKLNLPPY--LTQEARDLLKKLLKRNAASRLGAGPGDAGEVQAHPFFRHINWEELLARKVEPP 368          
BLAST of CB290810 vs. ExPASy Swiss-Prot
Match: KS6B1_BOVIN (Ribosomal protein S6 kinase beta-1 OS=Bos taurus GN=RPS6KB1 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.608e-22
Identity = 55/121 (45.45%), Postives = 77/121 (63.64%), Query Frame = -3
Query:  402 SNSFVGTEEYIAPEIIAGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQKTFANILHKDLKFPSSTPTSLHAKQLMYRLLHRDPKSRLGSHEG-ANEIKKHPFFKGVNW--ALVRCMNPP 755
            +++F GT EY+APEI+  +GH  AVDWW+LG L+Y+ML G  PF G+ R+KT   IL   L  P     +  A+ L+ +LL R+  SRLG+  G A E++ HPFF+ +NW   L R + PP
Sbjct:  250 THTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKKTIDKILKCKLNLPPY--LTQEARDLLKKLLKRNAASRLGAGPGDAGEVQAHPFFRHINWEELLARKVEPP 368          
The following BLAST results are available for this feature:
BLAST of CB290810 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
PK3_DICDI1.620e-2243.33Protein kinase 3 OS=Dictyostelium discoideum GN=pk... [more]
GAD8_SCHPO1.620e-2243.51Serine/threonine-protein kinase gad8 OS=Schizosacc... [more]
PKN2_HUMAN2.762e-2240.50Serine/threonine-protein kinase N2 OS=Homo sapiens... [more]
CBK1_ASHGO2.762e-2245.38Serine/threonine-protein kinase CBK1 OS=Ashbya gos... [more]
PKN1_MOUSE3.608e-2242.98Serine/threonine-protein kinase N1 OS=Mus musculus... [more]
KS6B1_RAT3.608e-2245.45Ribosomal protein S6 kinase beta-1 OS=Rattus norve... [more]
KS6B1_RABIT3.608e-2245.45Ribosomal protein S6 kinase beta-1 OS=Oryctolagus ... [more]
KS6B1_MOUSE3.608e-2245.45Ribosomal protein S6 kinase beta-1 OS=Mus musculus... [more]
KS6B1_HUMAN3.608e-2245.45Ribosomal protein S6 kinase beta-1 OS=Homo sapiens... [more]
KS6B1_BOVIN3.608e-2245.45Ribosomal protein S6 kinase beta-1 OS=Bos taurus G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01df10_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01df10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290810 ID=CB290810; Name=CB290810; organism=Citrus sinensis; type=EST; length=817bp
TTTTTTTTTTTTTGAAGAAAGAGATAGAAAATGGATTAATTACCTATTAA
ATTAATAAAATACAAAACTTACAAAGTACCCACCCTTACAGATACAAACG
ATGCATACAAGTAATATATTACATACACAAGGCCTCCAAGATTATCTATC
GACGACAACTGCCGAGGTGAAAGCACAAGCAGAATCAATGAAACTGTTAT
TACTCGTCAAGTTGAGCTCCCCTTCCATAGCCTCTACTAAATGGGATGCA
CGTACCAACACAAATTTGCAGCAGACACTTCAAATAAAATAACAAAGAAT
TAGACTCCTCAGAAAACGTTTTGTTGCAGATCTTGCATTCCTGGATCCAC
AACTTTATACTCCTTCTCAGTATCGGTAGCGAAGAGAGGGGCATCCAGCT
CAGGAGGGTTCATGCAACGAACTAGTGCCCAATTGACACCTTTGAAAAAT
GGATGCTTCTTTATTTCATTTGCTCCTTCATGCGAACCTAATCTGCTCTT
TGGATCTCTATGCAACAGGCGGTACATTAGCTGCTTTGCATGAAGACTTG
TCGGTGTACTTGACGGAAATTTGAGGTCTTTGTGGAGAATATTTGCAAAT
GTTTTTTGTCTTGTCTTGCCCCTGAATGGTGTGTATCCATAAAGCATTTC
ATACAGAAGAATTCCAAGAGCCCACCAGTCCACTGCACTTGTATGGCCTG
CACCGGCTATAATTTCCGGAGCTATATATTCTTCTGTGCCAACAAAAGAA
TTTGATGCTCGCATTGGTTCAGCCATGAAGACTGGATTCTGTTGGCCTTT
GTGGCGCCTTTTCTTTT
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