CB290892

Overview
NameCB290892
Unique NameCB290892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290892 vs. ExPASy Swiss-Prot
Match: SAP14_ORYSJ (Zinc finger AN1 domain-containing stress-associated protein 14 OS=Oryza sativa subsp. japonica GN=SAP14 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.921e-17
Identity = 37/75 (49.33%), Postives = 53/75 (70.67%), Query Frame = -2
Query:  430 ASELSESVEAKPKEGPSRCSSCKKRVGLTGFKCRCGNLYCVSHRYSDKHNCPFDYRTAARDAIIKANPVIKAEKL 654
            AS  S S     +   +RC++C+++VGLTGFKCRCG  +C  HRY+D+H C FDY+++ R+ I K NPV+ A+KL
Sbjct:  159 ASYSSSSPATGEQPEANRCATCRRKVGLTGFKCRCGGTFCGGHRYADEHGCGFDYKSSGRELIAKQNPVVVADKL 233          
BLAST of CB290892 vs. ExPASy Swiss-Prot
Match: SAP10_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 10 OS=Arabidopsis thaliana GN=SAP10 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.229e-16
Identity = 36/78 (46.15%), Postives = 55/78 (70.51%), Query Frame = -2
Query:  424 CASELSESVEAKPKEGPSRCSSCKKRVGLTGFKCRCGNLYCVSHRYSDKHNCPFDYRTAARDAIIKANPVIKAEKLDK 657
            C    S +VE +P +   RC  CK++VG+ GFKCRCG+++C SHRY ++H+CPFDY+ + R A+    P+I+A+KL +
Sbjct:   53 CPPTNSPAVEEEPVK-KRRCGICKRKVGMLGFKCRCGHMFCGSHRYPEEHSCPFDYKQSGRLALATQLPLIRADKLQR 129          
BLAST of CB290892 vs. ExPASy Swiss-Prot
Match: SAP10_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 10 OS=Oryza sativa subsp. japonica GN=SAP10 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.954e-15
Identity = 46/147 (31.29%), Postives = 72/147 (48.98%), Query Frame = -2
Query:  421 GSVATMNMCSKCYKDIMLKQDQAKLAASSIGSIVNETSSSNGSESVAAATVDVQASSVEPKIISVQPSCASELSESVEAKPKEGPSRCSSCKKRVGLTGFKCRCGNLYCVSHRYSDKHNCPFDYRTAARDAIIKANPVIKAEKLDKI 861
            GS AT  +CSKCYK    +Q Q +    +     ++TS    ++       D      E   +   P+  ++             +RC +C+K+VGL GF CRCG ++C +H       C FDY+ A R+AI + NP++ A K++KI
Sbjct:   26 GSAATDGLCSKCYKQ---QQPQPRHLIGTAAGDSDKTSLKVVADLSTLVIKDNSGVGGEGTTVMAPPATVTKAK-----------NRCKACRKKVGLLGFPCRCGGMFCGAHA------CAFDYKAAGREAIARHNPLVVAPKINKI 152          
BLAST of CB290892 vs. ExPASy Swiss-Prot
Match: ANUB1_HUMAN (AN1-type zinc finger and ubiquitin domain-containing protein 1 OS=Homo sapiens GN=ANUBL1 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.270e-12
Identity = 31/67 (46.27%), Postives = 46/67 (68.66%), Query Frame = -2
Query:  421 KEGPSRCSSCKKRVGL-TGFKCRCGNLYCVSHRYSDKHNCPFDYRTAARDAIIKANPVIKAEKLDKI 618
            K+  + C  C K+ GL + ++CRCGN +C SHRY++ H C +DY++A R  + +ANPV+ A KL KI
Sbjct:  661 KKTTNHCFLCGKKTGLASSYECRCGNNFCASHRYAETHGCTYDYKSAGRRYLHEANPVVNAPKLPKI 727          
The following BLAST results are available for this feature:
BLAST of CB290892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
SAP14_ORYSJ2.921e-1749.33Zinc finger AN1 domain-containing stress-associate... [more]
SAP10_ARATH3.229e-1646.15Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP10_ORYSJ7.954e-1531.29Zinc finger A20 and AN1 domain-containing stress-a... [more]
ANUB1_HUMAN1.270e-1246.27AN1-type zinc finger and ubiquitin domain-containi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_02ac02_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ac02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290892 ID=CB290892; Name=CB290892; organism=Citrus sinensis; type=EST; length=862bp
TTTTTGATACAAACCATAATTAAAAATTTACAGAGGCTAAGCGCAAGAAT
TGTCCATGTATGTTTTCCACATCATATGGAAATAGCACAACCATCTTTTT
CTGAATTTTTTTTTTTAAGCAGAAACTAATAAAGTGAAATGCCATATGAA
ACATAATGACAAATTGGAAAGCTATCCAAAAGTCCATAAAACCAGAGCAC
AGATTCACTCTTAAACACTGAAGCCAACATATAAGTTCTCGCCAACACAC
GACATAGAGTTCTTCATACTGCAGAGATGTCCTATAACTGATAATGGGCC
CCCAGCATATATAACATTAAAGGACACCTGATAAGATACGTGGCCTTCTC
AGAAGAAGCCTCTAACAGATGAGCAAGATCATCATTCTTTGATTATTGAA
ACCTCATCCCATTGAATCTAGATTTTATCTAGCTTCTCAGCCTTGATCAC
AGGGTTTGCTTTAATTATAGCATCCCTAGCAGCAGTGCGGTAGTCAAAGG
GGCAGTTATGTTTGTCCGAATAGCGATGTGACACACAGTATAAGTTACCA
CAGCGACATTTGAATCCTGTTAAACCAACACGCTTCTTGCAACTGCTGCA
CCGGCTGGGACCCTCCTTCGGCTTTGCCTCCACACTCTCGCTCAATTCTG
AAGCACATGATGGCTGCACAGAGATGATTTTTGGCTCCACTGAACTAGCT
TGCACATCAACAGTGGCAGCAGCAACAGATTCACTTCCATTGCTGCTTGA
CGTTTCATTCACAATGCTTCCAATAGATGAAGCAGCAAGCTTAGCTTGAT
CCTGTTTCAGCATTATATCCTTGTAGCATTTGGAACACATATTCATAGTA
GCCACACTTCCA
back to top