CB290908

Overview
NameCB290908
Unique NameCB290908
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290908 vs. ExPASy Swiss-Prot
Match: RPIA_BUCAT (Ribose-5-phosphate isomerase A OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) GN=rpiA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.918e-18
Identity = 63/186 (33.87%), Postives = 100/186 (53.76%), Query Frame = 2
Query:  218 LKKLAADKAVDYVKSGMALGLGTGSTGAFVVDKIGQLLKTGELRDIVG-IPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFKELGCEAKLKEG---ENGKPYITDNFNYIIDLY 763
            LKK AA  A+DY+  G  +G+GTG+T  + ++ +G +        I G + +S  +    K   I +  L +  SL + +D ADE++  + ++KG GGAL REK++ + SK FV + D+SK V  LG     +P+E++     Y       +F+E+     +K G   +  K  ITDN N IID+Y
Sbjct:    6 LKKKAAWAALDYIDPGTIIGVGTGTTIFYFIEALGTIKNL-----IYGAVSSSNSSTVLLKKHGIEVFDLKNFSSLAIYVDSADEINNHMQMIKGGGGALTREKIIASMSKKFVCIIDKSKKVDVLG--TFPLPIEIIPMALSY-------IFREM-----IKIGGTPKYRKNVITDNGNIIIDVY 172          
BLAST of CB290908 vs. ExPASy Swiss-Prot
Match: RPIA_BUCAI (Ribose-5-phosphate isomerase A OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=rpiA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.918e-18
Identity = 63/186 (33.87%), Postives = 100/186 (53.76%), Query Frame = 2
Query:  218 LKKLAADKAVDYVKSGMALGLGTGSTGAFVVDKIGQLLKTGELRDIVG-IPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFKELGCEAKLKEG---ENGKPYITDNFNYIIDLY 763
            LKK AA  A+DY+  G  +G+GTG+T  + ++ +G +        I G + +S  +    K   I +  L +  SL + +D ADE++  + ++KG GGAL REK++ + SK FV + D+SK V  LG     +P+E++     Y       +F+E+     +K G   +  K  ITDN N IID+Y
Sbjct:    6 LKKKAAWAALDYIDPGTIIGVGTGTTIFYFIEALGTIKNL-----IYGAVSSSNSSTVLLKKHGIEVFDLKNFSSLAIYVDSADEINNHMQMIKGGGGALTREKIIASMSKKFVCIIDKSKKVDVLG--TFPLPIEIIPMALSY-------IFREM-----IKIGGTPKYRKNVITDNGNIIIDVY 172          
BLAST of CB290908 vs. ExPASy Swiss-Prot
Match: RPIA_BUCA5 (Ribose-5-phosphate isomerase A OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=rpiA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.918e-18
Identity = 63/186 (33.87%), Postives = 100/186 (53.76%), Query Frame = 2
Query:  218 LKKLAADKAVDYVKSGMALGLGTGSTGAFVVDKIGQLLKTGELRDIVG-IPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFKELGCEAKLKEG---ENGKPYITDNFNYIIDLY 763
            LKK AA  A+DY+  G  +G+GTG+T  + ++ +G +        I G + +S  +    K   I +  L +  SL + +D ADE++  + ++KG GGAL REK++ + SK FV + D+SK V  LG     +P+E++     Y       +F+E+     +K G   +  K  ITDN N IID+Y
Sbjct:    6 LKKKAAWAALDYIDPGTIIGVGTGTTIFYFIEALGTIKNL-----IYGAVSSSNSSTVLLKKHGIEVFDLKNFSSLAIYVDSADEINNHMQMIKGGGGALTREKIIASMSKKFVCIIDKSKKVDVLG--TFPLPIEIIPMALSY-------IFREM-----IKIGGTPKYRKNVITDNGNIIIDVY 172          
BLAST of CB290908 vs. ExPASy Swiss-Prot
Match: RPIA_POLSQ (Ribose-5-phosphate isomerase A OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=rpiA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.470e-17
Identity = 63/199 (31.66%), Postives = 104/199 (52.26%), Query Frame = 2
Query:  203 LTQDDLKKLAADKAVDYV---KSGMALGLGTGSTGAFVVDKIGQLLKTGELRDIVG-IPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFKELGCEAKLKEGEN---------GKPYITDNFNYIIDL 760
            + QD LKK+  D A D V    +G  LG+GTGST    +D +             G + +S  T E+       +   +D  SL   +DGADE+DP+ +++KG GGAL REK++ + ++ F+ + D SK V  LG    A+PVE++        V  ++L ++LG +  L+  ++          +P++TDN  +I+D+
Sbjct:    1 MNQDQLKKMVGDAARDEVLKLPAGQILGVGTGSTANCFIDALAP-----HKDHFAGTVSSSNATTERLLKHGFKVLDPNDVVSLPAYVDGADEIDPQGHMIKGGGGALTREKIIASMAQQFICICDSSKQVPVLG--NFALPVEIIPLA---KGVVTREL-EKLGGKVTLRLAKSTRADLNQTPSEPFVTDNGGWILDI 188          
BLAST of CB290908 vs. ExPASy Swiss-Prot
Match: RPIA_DICNV (Ribose-5-phosphate isomerase A OS=Dichelobacter nodosus (strain VCS1703A) GN=rpiA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.731e-16
Identity = 56/187 (29.95%), Postives = 100/187 (53.48%), Query Frame = 2
Query:  203 LTQDDLKKLAADKAVDYVKSGMALGLGTGSTGAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFKELGCEAKLKEGENGKPYITDNFNYIIDLY 763
            + Q  LK+  A   +++V   + LG+G+GST    ++ + Q  +  + RDIV    +     +A    +      D P  D+ +DGADE++ +  ++KG G AL REK++ +A+K F+ + DESK V+ LG  +  + VEV+     Y    +     +LG E + ++G      +TDN ++I+D++
Sbjct:    1 MNQQLLKEKVAAAVLEHVPENITLGVGSGSTVLCFIEALKQAKR--QFRDIVAASETSSKALEAAGFRVRDLNACDPP--DIYVDGADEINDDKIMIKGGGAALTREKIIASAAKEFICIIDESKKVAQLG--RFPVAVEVIPMARSY----VAREIVKLGAEPRWRQG-----VVTDNGHWILDVH 172          
BLAST of CB290908 vs. ExPASy Swiss-Prot
Match: RPIA_POLNS (Ribose-5-phosphate isomerase A OS=Polynucleobacter necessarius (strain STIR1) GN=rpiA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.084e-16
Identity = 59/198 (29.80%), Postives = 99/198 (50.00%), Query Frame = 2
Query:  203 LTQDDLKKLAADKAVDYV---KSGMALGLGTGSTGAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFKELGCEAKLKEGEN---------GKPYITDNFNYIIDL 760
            + QD LK++  + A D V    +G  LG+GTGST  + +D +   L  G     V   +S  T E+       +   +D   L   +DGADE+DP  +++KG GG L  EK++ + +K F+ + D SK V  LG    A+PVE++       +V  +   ++ G    L+  ++          +P++TDN  +I+D+
Sbjct:    1 MNQDQLKQMVGEAARDEVLKLPAGQVLGVGTGSTANYFIDALA--LHKGHFAGTVS--SSNATTERLLKHGFKVLDPNDVQGLPAYVDGADEIDPAGHMIKGGGGVLTGEKIIASMAKQFICICDSSKQVPVLG--NFALPVEIIPL--SQGVVSRE--LEKFGGRVTLRLAKHTRADLNQTPSEPFVTDNGGWILDV 188          
BLAST of CB290908 vs. ExPASy Swiss-Prot
Match: RPIA_HALSA (Ribose-5-phosphate isomerase A OS=Halobacterium salinarium GN=rpiA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.945e-16
Identity = 66/181 (36.46%), Postives = 97/181 (53.59%), Query Frame = 2
Query:  221 KKLAADKAV-DYVKSGMALGLGTGSTGAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFKELGCEAKLKEGE-NGKPYITDNFNYIID 757
            K+ A + AV + V  G  +GLGTGST A  +  +G      E  D+ G+ TS  +  +A    + +T+L+   S+D+AIDGAD+V   + LVKG G A  REK V A++  FVVVAD SK    +    + +PV VV   W      + D  + LG  A L++ E    P +TD  + ++D
Sbjct:   11 KRRAGEAAVAEEVTEGAVVGLGTGSTVAHAIRALG-----AEASDVSGVATSFESRRRAVDAGVTVTSLEA-ASVDVAIDGADQVADGV-LVKGGGAAHTREKYVAASADRFVVVADPSKESDVV---DVPVPVAVVPDAWPV----VVDRVEALGGTATLRDAERKDGPVVTDTGSLVVD 177          
BLAST of CB290908 vs. ExPASy Swiss-Prot
Match: RPIA_HALS3 (Ribose-5-phosphate isomerase A OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpiA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.945e-16
Identity = 66/181 (36.46%), Postives = 97/181 (53.59%), Query Frame = 2
Query:  221 KKLAADKAV-DYVKSGMALGLGTGSTGAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFKELGCEAKLKEGE-NGKPYITDNFNYIID 757
            K+ A + AV + V  G  +GLGTGST A  +  +G      E  D+ G+ TS  +  +A    + +T+L+   S+D+AIDGAD+V   + LVKG G A  REK V A++  FVVVAD SK    +    + +PV VV   W      + D  + LG  A L++ E    P +TD  + ++D
Sbjct:   11 KRRAGEAAVAEEVTEGAVVGLGTGSTVAHAIRALG-----AEASDVSGVATSFESRRRAVDAGVTVTSLEA-ASVDVAIDGADQVADGV-LVKGGGAAHTREKYVAASADRFVVVADPSKESDVV---DVPVPVAVVPDAWPV----VVDRVEALGGTATLRDAERKDGPVVTDTGSLVVD 177          
The following BLAST results are available for this feature:
BLAST of CB290908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 458
Match NameE-valueIdentityDescription
RPIA_BUCAT2.918e-1833.87Ribose-5-phosphate isomerase A OS=Buchnera aphidic... [more]
RPIA_BUCAI2.918e-1833.87Ribose-5-phosphate isomerase A OS=Buchnera aphidic... [more]
RPIA_BUCA52.918e-1833.87Ribose-5-phosphate isomerase A OS=Buchnera aphidic... [more]
RPIA_POLSQ2.470e-1731.66Ribose-5-phosphate isomerase A OS=Polynucleobacter... [more]
RPIA_DICNV2.731e-1629.95Ribose-5-phosphate isomerase A OS=Dichelobacter no... [more]
RPIA_POLNS6.084e-1629.80Ribose-5-phosphate isomerase A OS=Polynucleobacter... [more]
RPIA_HALSA7.945e-1636.46Ribose-5-phosphate isomerase A OS=Halobacterium sa... [more]
RPIA_HALS37.945e-1636.46Ribose-5-phosphate isomerase A OS=Halobacterium sa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ac10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ac10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290908 ID=CB290908; Name=CB290908; organism=Citrus sinensis; type=EST; length=780bp
GAACAACTTCTCACAACTCACATCTCATTTATTTTCCTCTCAAACTCACC
CCATCACCACCACAGCCTCCGCCCAAGAAAAATGACATTCTTTATCCTTC
CTCCCCACTCTCCATCTCTCCACCTCCGCTCACTTCCTCCCACGCGCCCC
CAAATCCCTCAGACCACGCGCCATTTCCATCAAAGCCCAGGCCGTCCCGG
CCCTCACCCAAGACGACTTGAAGAAGCTCGCCGCCGACAAGGCCGTTGAC
TACGTCAAATCCGGCATGGCCCTCGGCCTCGGTACCGGCTCCACCGGCGC
CTTCGTCGTCGACAAGATCGGCCAACTCTTGAAAACCGGCGAGTTAAGGG
ACATCGTCGGAATCCCAACTTCAAAACGCACGGAAGAGCAAGCCAAGTCG
CTTAACATTCCCTTAACCACACTTGACGATCACCCATCACTGGATTTGGC
CATTGACGGCGCCGATGAGGTTGACCCAGAATTGAACCTCGTTAAAGGCC
GAGGCGGGGCGCTTTTGAGAGAGAAGATGGTGGAAGCTGCGTCCAAAAGC
TTCGTTGTTGTGGCTGATGAGAGTAAATTAGTGAGCGGACTCGGTGGGAG
TAAGCTTGCGATGCCAGTTGAAGTGGTTCAGTTTTGCTGGAAATACAATT
TGGTTAGGCTTCAAGACTTGTTCAAGGAACTGGGTTGTGAGGCCAAGCTT
AAAGAAGGGGAAAACGGGAAGCCTTATATCACTGATAATTTTAACTACAT
TATCGATTTGTATATCAAGACGGCCATTAA
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