CB290908

Overview
NameCB290908
Unique NameCB290908
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB290908 vs. ExPASy Swiss-Prot
Match: RPIA_THET2 (Ribose-5-phosphate isomerase A OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=rpiA PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.882e-33
Identity = 85/182 (46.70%), Postives = 117/182 (64.29%), Query Frame = 2 
Query:  212 DDLKKLAADKAVDYVKSGMALGLGTGSTGAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFKELGCEAKLKEGENGKPYITDNFNYIID 757
            +  KK AA  A+ YV+ GM +GLGTGST  + V ++ + L+ GEL+ +VG+PTS+ TEE AK   IPL  L     +DLAIDGADE+ P L L+KG GGALLREK+VE A+K F+V+AD +K V  LG  +  +PVE+V F ++  L  + D    LG E +L+  +  + Y TD  + I D
Sbjct:    6 ESYKKEAAHAAIAYVQDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATEELAKREGIPLVDLPPE-GVDLAIDGADEIAPGLALIKGMGGALLREKIVERAAKEFIVIADHTKKVPVLG--RGPVPVEIVPFGYRATLKAIAD----LGGEPELRM-DGDEFYFTDGGHLIAD 179
[Close]
BLAST of CB290908 vs. ExPASy Swiss-Prot
Match: RPIA_STRZT (Ribose-5-phosphate isomerase A OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=rpiA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.882e-33
Identity = 83/183 (45.36%), Postives = 119/183 (65.03%), Query Frame = 2 
Query:  212 DDLKKLAADKAVDYVKSGMALGLGTGSTGAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFKELGCEAKLKEGENGKPYITDNFNYIIDL 760
            ++LKK+A  KA ++V  GM +GLGTGST  + V++IG+ +K   L+ I  + TS  T +QA+ LNIPL ++D    +D+ +DGADEVD + N +KG GGALL EK+V   SK ++ V DESKLV  LG  KL  PVEVVQ    Y   ++   F+  G +   +E ++G+ ++TD  N+IIDL
Sbjct:    2 ENLKKMAGIKAAEFVSDGMVVGLGTGSTAYYFVEEIGRRIKEEGLQ-ITAVTTSSVTTKQAEGLNIPLKSIDQVDFVDVTVDGADEVDSQFNGIKGGGGALLMEKVVATPSKEYIWVVDESKLVEKLGAFKL--PVEVVQ----YGAEQVFRHFERAGYKPSFRE-KDGQRFVTDMQNFIIDL 176
[Close]
BLAST of CB290908 vs. ExPASy Swiss-Prot
Match: RPIA_STRZP (Ribose-5-phosphate isomerase A OS=Streptococcus pneumoniae (strain P1031) GN=rpiA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.882e-33
Identity = 83/183 (45.36%), Postives = 119/183 (65.03%), Query Frame = 2 
Query:  212 DDLKKLAADKAVDYVKSGMALGLGTGSTGAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFKELGCEAKLKEGENGKPYITDNFNYIIDL 760
            ++LKK+A  KA ++V  GM +GLGTGST  + V++IG+ +K   L+ I  + TS  T +QA+ LNIPL ++D    +D+ +DGADEVD + N +KG GGALL EK+V   SK ++ V DESKLV  LG  KL  PVEVVQ    Y   ++   F+  G +   +E ++G+ ++TD  N+IIDL
Sbjct:    2 ENLKKMAGIKAAEFVSDGMVVGLGTGSTAYYFVEEIGRRIKEEGLQ-ITAVTTSSVTTKQAEGLNIPLKSIDQVDFVDVTVDGADEVDSQFNGIKGGGGALLMEKVVATPSKEYIWVVDESKLVEKLGAFKL--PVEVVQ----YGAEQVFRHFERAGYKPSFRE-KDGQRFVTDMQNFIIDL 176
[Close]
BLAST of CB290908 vs. ExPASy Swiss-Prot
Match: RPIA_STRR6 (Ribose-5-phosphate isomerase A OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=rpiA PE=3 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.882e-33
Identity = 83/183 (45.36%), Postives = 119/183 (65.03%), Query Frame = 2 
Query:  212 DDLKKLAADKAVDYVKSGMALGLGTGSTGAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFKELGCEAKLKEGENGKPYITDNFNYIIDL 760
            ++LKK+A  KA ++V  GM +GLGTGST  + V++IG+ +K   L+ I  + TS  T +QA+ LNIPL ++D    +D+ +DGADEVD + N +KG GGALL EK+V   SK ++ V DESKLV  LG  KL  PVEVVQ    Y   ++   F+  G +   +E ++G+ ++TD  N+IIDL
Sbjct:    2 ENLKKMAGIKAAEFVSDGMVVGLGTGSTAYYFVEEIGRRIKEEGLQ-ITAVTTSSVTTKQAEGLNIPLKSIDQVDFVDVTVDGADEVDSQFNGIKGGGGALLMEKVVATPSKEYIWVVDESKLVEKLGAFKL--PVEVVQ----YGAEQVFRHFERAGYKPSFRE-KDGQRFVTDMQNFIIDL 176
[Close]
BLAST of CB290908 vs. ExPASy Swiss-Prot
Match: RPIA_STRP7 (Ribose-5-phosphate isomerase A OS=Streptococcus pneumoniae (strain 70585) GN=rpiA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.882e-33
Identity = 83/183 (45.36%), Postives = 119/183 (65.03%), Query Frame = 2 
Query:  212 DDLKKLAADKAVDYVKSGMALGLGTGSTGAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFKELGCEAKLKEGENGKPYITDNFNYIIDL 760
            ++LKK+A  KA ++V  GM +GLGTGST  + V++IG+ +K   L+ I  + TS  T +QA+ LNIPL ++D    +D+ +DGADEVD + N +KG GGALL EK+V   SK ++ V DESKLV  LG  KL  PVEVVQ    Y   ++   F+  G +   +E ++G+ ++TD  N+IIDL
Sbjct:    2 ENLKKMAGIKAAEFVSDGMVVGLGTGSTAYYFVEEIGRRIKEEGLQ-ITAVTTSSVTTKQAEGLNIPLKSIDQVDFVDVTVDGADEVDSQFNGIKGGGGALLMEKVVATPSKEYIWVVDESKLVEKLGAFKL--PVEVVQ----YGAEQVFRHFERAGYKPSFRE-KDGQRFVTDMQNFIIDL 176
[Close]
BLAST of CB290908 vs. ExPASy Swiss-Prot
Match: RPIA_STRP4 (Ribose-5-phosphate isomerase A OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=rpiA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.882e-33
Identity = 83/183 (45.36%), Postives = 119/183 (65.03%), Query Frame = 2 
Query:  212 DDLKKLAADKAVDYVKSGMALGLGTGSTGAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFKELGCEAKLKEGENGKPYITDNFNYIIDL 760
            ++LKK+A  KA ++V  GM +GLGTGST  + V++IG+ +K   L+ I  + TS  T +QA+ LNIPL ++D    +D+ +DGADEVD + N +KG GGALL EK+V   SK ++ V DESKLV  LG  KL  PVEVVQ    Y   ++   F+  G +   +E ++G+ ++TD  N+IIDL
Sbjct:    2 ENLKKMAGIKAAEFVSDGMVVGLGTGSTAYYFVEEIGRRIKEEGLQ-ITAVTTSSVTTKQAEGLNIPLKSIDQVDFVDVTVDGADEVDSQFNGIKGGGGALLMEKVVATPSKEYIWVVDESKLVEKLGAFKL--PVEVVQ----YGAEQVFRHFERAGYKPSFRE-KDGQRFVTDMQNFIIDL 176
[Close]
BLAST of CB290908 vs. ExPASy Swiss-Prot
Match: RPIA_STRP2 (Ribose-5-phosphate isomerase A OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=rpiA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.882e-33
Identity = 83/183 (45.36%), Postives = 119/183 (65.03%), Query Frame = 2 
Query:  212 DDLKKLAADKAVDYVKSGMALGLGTGSTGAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFKELGCEAKLKEGENGKPYITDNFNYIIDL 760
            ++LKK+A  KA ++V  GM +GLGTGST  + V++IG+ +K   L+ I  + TS  T +QA+ LNIPL ++D    +D+ +DGADEVD + N +KG GGALL EK+V   SK ++ V DESKLV  LG  KL  PVEVVQ    Y   ++   F+  G +   +E ++G+ ++TD  N+IIDL
Sbjct:    2 ENLKKMAGIKAAEFVSDGMVVGLGTGSTAYYFVEEIGRRIKEEGLQ-ITAVTTSSVTTKQAEGLNIPLKSIDQVDFVDVTVDGADEVDSQFNGIKGGGGALLMEKVVATPSKEYIWVVDESKLVEKLGAFKL--PVEVVQ----YGAEQVFRHFERAGYKPSFRE-KDGQRFVTDMQNFIIDL 176
[Close]
BLAST of CB290908 vs. ExPASy Swiss-Prot
Match: RPIA_RHOSK (Ribose-5-phosphate isomerase A OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=rpiA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.882e-33
Identity = 85/189 (44.97%), Postives = 120/189 (63.49%), Query Frame = 2 
Query:  212 DDLKKLAADKAVDYVKSGMALGLGTGSTGAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFK---ELGCEAKLKEGENGKPYITDNFNYIIDLYIK 769
            D  K  AA +AVD V+ GM LGLGTGST A++V  + + ++   LR + G+PTS RT E A++L I + TLD+   LDL IDGADE D + NL+KG G ALL+EK+V  AS   VV+AD +K V+ LG     +PVEV+ F W+   + +++  +    LG E  L+   +  P +TD  NYI+DL++K
Sbjct:    9 DTAKFAAARRAVDLVQDGMKLGLGTGSTAAWMVRCLAERVREEGLR-VQGVPTSTRTAELARALGIQVVTLDEAKWLDLTIDGADEFDADFNLIKGGGAALLQEKIVATASDRMVVIADAAKEVAHLGA--FPLPVEVIPFGWQSTKMLIEETLEGMDVLGREVTLRLSGDA-PLLTDEKNYILDLHLK 193
[Close]
BLAST of CB290908 vs. ExPASy Swiss-Prot
Match: RPIA_RHOS4 (Ribose-5-phosphate isomerase A OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rpiA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.882e-33
Identity = 85/189 (44.97%), Postives = 120/189 (63.49%), Query Frame = 2 
Query:  212 DDLKKLAADKAVDYVKSGMALGLGTGSTGAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFK---ELGCEAKLKEGENGKPYITDNFNYIIDLYIK 769
            D  K  AA +AVD V+ GM LGLGTGST A++V  + + ++   LR + G+PTS RT E A++L I + TLD+   LDL IDGADE D + NL+KG G ALL+EK+V  AS   VV+AD +K V+ LG     +PVEV+ F W+   + +++  +    LG E  L+   +  P +TD  NYI+DL++K
Sbjct:    9 DTAKFAAARRAVDLVQDGMKLGLGTGSTAAWMVRCLAERVREEGLR-VQGVPTSTRTAELARALGIQVVTLDEAKWLDLTIDGADEFDADFNLIKGGGAALLQEKIVATASDRMVVIADAAKEVAHLGA--FPLPVEVIPFGWQSTKMLIEETLEGMDVLGREVTLRLSGDA-PLLTDEKNYILDLHLK 193
[Close]
BLAST of CB290908 vs. ExPASy Swiss-Prot
Match: RPIA_RHOS1 (Ribose-5-phosphate isomerase A OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=rpiA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.882e-33
Identity = 85/189 (44.97%), Postives = 120/189 (63.49%), Query Frame = 2 
Query:  212 DDLKKLAADKAVDYVKSGMALGLGTGSTGAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFK---ELGCEAKLKEGENGKPYITDNFNYIIDLYIK 769
            D  K  AA +AVD V+ GM LGLGTGST A++V  + + ++   LR + G+PTS RT E A++L I + TLD+   LDL IDGADE D + NL+KG G ALL+EK+V  AS   VV+AD +K V+ LG     +PVEV+ F W+   + +++  +    LG E  L+   +  P +TD  NYI+DL++K
Sbjct:    9 DTAKFAAARRAVDLVQDGMKLGLGTGSTAAWMVRCLAERVREEGLR-VQGVPTSTRTAELARALGIQVVTLDEAKWLDLTIDGADEFDADFNLIKGGGAALLQEKIVATASDRMVVIADAAKEVAHLGA--FPLPVEVIPFGWQSTKMLIEETLEGMDVLGREVTLRLSGDA-PLLTDEKNYILDLHLK 193
The following BLAST results are available for this feature:
BLAST of CB290908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 458
Match NameE-valueIdentityDescription
RPIA_THET21.882e-3346.70Ribose-5-phosphate isomerase A OS=Thermus thermoph... [more]
RPIA_STRZT1.882e-3345.36Ribose-5-phosphate isomerase A OS=Streptococcus pn... [more]
RPIA_STRZP1.882e-3345.36Ribose-5-phosphate isomerase A OS=Streptococcus pn... [more]
RPIA_STRR61.882e-3345.36Ribose-5-phosphate isomerase A OS=Streptococcus pn... [more]
RPIA_STRP71.882e-3345.36Ribose-5-phosphate isomerase A OS=Streptococcus pn... [more]
RPIA_STRP41.882e-3345.36Ribose-5-phosphate isomerase A OS=Streptococcus pn... [more]
RPIA_STRP21.882e-3345.36Ribose-5-phosphate isomerase A OS=Streptococcus pn... [more]
RPIA_RHOSK1.882e-3344.97Ribose-5-phosphate isomerase A OS=Rhodobacter spha... [more]
RPIA_RHOS41.882e-3344.97Ribose-5-phosphate isomerase A OS=Rhodobacter spha... [more]
RPIA_RHOS11.882e-3344.97Ribose-5-phosphate isomerase A OS=Rhodobacter spha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ac10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ac10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290908 ID=CB290908; Name=CB290908; organism=Citrus sinensis; type=EST; length=780bp
GAACAACTTCTCACAACTCACATCTCATTTATTTTCCTCTCAAACTCACC
CCATCACCACCACAGCCTCCGCCCAAGAAAAATGACATTCTTTATCCTTC
CTCCCCACTCTCCATCTCTCCACCTCCGCTCACTTCCTCCCACGCGCCCC
CAAATCCCTCAGACCACGCGCCATTTCCATCAAAGCCCAGGCCGTCCCGG
CCCTCACCCAAGACGACTTGAAGAAGCTCGCCGCCGACAAGGCCGTTGAC
TACGTCAAATCCGGCATGGCCCTCGGCCTCGGTACCGGCTCCACCGGCGC
CTTCGTCGTCGACAAGATCGGCCAACTCTTGAAAACCGGCGAGTTAAGGG
ACATCGTCGGAATCCCAACTTCAAAACGCACGGAAGAGCAAGCCAAGTCG
CTTAACATTCCCTTAACCACACTTGACGATCACCCATCACTGGATTTGGC
CATTGACGGCGCCGATGAGGTTGACCCAGAATTGAACCTCGTTAAAGGCC
GAGGCGGGGCGCTTTTGAGAGAGAAGATGGTGGAAGCTGCGTCCAAAAGC
TTCGTTGTTGTGGCTGATGAGAGTAAATTAGTGAGCGGACTCGGTGGGAG
TAAGCTTGCGATGCCAGTTGAAGTGGTTCAGTTTTGCTGGAAATACAATT
TGGTTAGGCTTCAAGACTTGTTCAAGGAACTGGGTTGTGAGGCCAAGCTT
AAAGAAGGGGAAAACGGGAAGCCTTATATCACTGATAATTTTAACTACAT
TATCGATTTGTATATCAAGACGGCCATTAA
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