CB290908

Overview
NameCB290908
Unique NameCB290908
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290908 vs. ExPASy Swiss-Prot
Match: RPIA_STRS7 (Ribose-5-phosphate isomerase A OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=rpiA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.458e-33
Identity = 87/181 (48.07%), Postives = 113/181 (62.43%), Query Frame = 2
Query:  218 LKKLAADKAVDYVKSGMALGLGTGSTGAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFKELGCEAKLKEGENGKPYITDNFNYIIDL 760
            LKKLA   A  YV  GM +GLGTGST  + V++IG+ +K   L+ +VG+ TS  T +QA+ L IPLT++DD   +DL +DGADEVD   N +KG G ALL EK+V   +K ++ V DESKLV  LG  KL  PVEVVQ    Y   RL  +F+  G +   +  +  K  ITD  N+IIDL
Sbjct:    4 LKKLAGVTAAQYVTDGMTIGLGTGSTAYYFVEEIGRRIKEEGLQ-VVGVTTSSVTTKQAEGLGIPLTSIDDIDCIDLTVDGADEVDKAFNGIKGGGAALLMEKIVATPTKEYIWVVDESKLVDHLGAFKL--PVEVVQ----YGADRLFRVFERAGYKPSFRM-KGDKRLITDMQNFIIDL 176          
BLAST of CB290908 vs. ExPASy Swiss-Prot
Match: RPIA_STRPN (Ribose-5-phosphate isomerase A OS=Streptococcus pneumoniae GN=rpiA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.458e-33
Identity = 82/183 (44.81%), Postives = 119/183 (65.03%), Query Frame = 2
Query:  212 DDLKKLAADKAVDYVKSGMALGLGTGSTGAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFKELGCEAKLKEGENGKPYITDNFNYIIDL 760
            ++LKK+A   A +++K GM +GLGTGST  + V++IG+ +K   L+ I  + TS  T +QA+ LNIPL ++D    +D+ +DGADEVD + N +KG GGALL EK+V   SK ++ V DESKLV  LG  KL  PVEVVQ    Y   ++   F+  G +   +E ++G+ ++TD  N+IIDL
Sbjct:    2 ENLKKMAGITAAEFIKDGMVVGLGTGSTAYYFVEEIGRRIKEEGLQ-ITAVTTSSVTSKQAEGLNIPLKSIDQVDFVDVTVDGADEVDSQFNGIKGGGGALLMEKVVATPSKEYIWVVDESKLVEKLGAFKL--PVEVVQ----YGAEQVFRHFERAGYKPSFRE-KDGQRFVTDMQNFIIDL 176          
BLAST of CB290908 vs. ExPASy Swiss-Prot
Match: RPIA_STREM (Ribose-5-phosphate isomerase A OS=Streptococcus equi subsp. zooepidemicus (strain MGCS10565) GN=rpiA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.458e-33
Identity = 87/181 (48.07%), Postives = 113/181 (62.43%), Query Frame = 2
Query:  218 LKKLAADKAVDYVKSGMALGLGTGSTGAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFKELGCEAKLKEGENGKPYITDNFNYIIDL 760
            LKKLA   A  YV  GM +GLGTGST  + V++IG+ +K   L+ +VG+ TS  T +QA+ L IPLT++DD   +DL +DGADEVD   N +KG G ALL EK+V   +K ++ V DESKLV  LG  KL  PVEVVQ    Y   RL  +F+  G +   +  +  K  ITD  N+IIDL
Sbjct:    4 LKKLAGVTAAQYVTDGMTIGLGTGSTAYYFVEEIGRRIKEEGLQ-VVGVTTSSVTTKQAEGLGIPLTSIDDIDCIDLTVDGADEVDKAFNGIKGGGAALLMEKIVATPTKEYIWVVDESKLVDHLGAFKL--PVEVVQ----YGADRLFRVFERAGYKPSFRM-KGDKRLITDMQNFIIDL 176          
BLAST of CB290908 vs. ExPASy Swiss-Prot
Match: RPIA_LACLS (Ribose-5-phosphate isomerase A OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=rpiA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.458e-33
Identity = 81/185 (43.78%), Postives = 117/185 (63.24%), Query Frame = 2
Query:  212 DDLKKLAADKAVDYVKSGMALGLGTGSTGAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFKELGCEAKLKEGENGKPYITDNFNYIIDLYI 766
            ++LKK    KA ++VKSGM +GLGTGST A+ V+++G+ +   +L +I G+ TS  T EQAK+L IPL ++D+   +DL +DGADE+D  LN +KG G ALL EK+V   SK ++ + DESKL   LG  K  +PVEV+    +Y   +L   F+        +  E G+  ITD  ++IIDL+I
Sbjct:    2 ENLKKQVGIKAAEFVKSGMVVGLGTGSTAAYFVEELGRRVAEEQL-EITGVTTSSVTSEQAKALGIPLASIDEVDYVDLTVDGADEIDSHLNGIKGGGAALLMEKIVATYSKDYIWIVDESKLSENLGSFK--VPVEVI----RYGSEQLFKEFERAAYAPTWRLNEEGEKLITDMQHFIIDLHI 179          
BLAST of CB290908 vs. ExPASy Swiss-Prot
Match: RPIA_STRSV (Ribose-5-phosphate isomerase A OS=Streptococcus sanguinis (strain SK36) GN=rpiA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.193e-33
Identity = 83/183 (45.36%), Postives = 119/183 (65.03%), Query Frame = 2
Query:  212 DDLKKLAADKAVDYVKSGMALGLGTGSTGAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFKELGCEAKLKEGENGKPYITDNFNYIIDL 760
            ++LKKLA  KA ++V+SGM +GLGTGST  + V++IG+ +K   L+ I  + TS  T +QA+ L IPL ++DD   +D+ +DGADEVD   N +KG GGALL EK+V   +K ++ V DESK+V  LG  KL  PVEVVQ    Y   +L   F+  G +   +E ++ + ++TD  N+IIDL
Sbjct:    2 ENLKKLAGIKAAEFVQSGMIVGLGTGSTAYYFVEEIGRRIKEEGLQ-ITAVTTSSVTSKQAEGLGIPLKSIDDVDQVDVTVDGADEVDSAFNGIKGGGGALLMEKVVAVPTKHYIWVVDESKMVEKLGAFKL--PVEVVQ----YGAEQLFRRFERAGYKPAFREKDDQR-FVTDMQNFIIDL 176          
BLAST of CB290908 vs. ExPASy Swiss-Prot
Match: RPIA_STRE4 (Ribose-5-phosphate isomerase A OS=Streptococcus equi subsp. equi (strain 4047) GN=rpiA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.193e-33
Identity = 86/181 (47.51%), Postives = 113/181 (62.43%), Query Frame = 2
Query:  218 LKKLAADKAVDYVKSGMALGLGTGSTGAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFKELGCEAKLKEGENGKPYITDNFNYIIDL 760
            LKK+A   A  YV  GM +GLGTGST  + V++IG+ +K   L+ +VG+ TS  T +QA+ L IPLT++DD   +DL +DGADEVD   N +KG G ALL EK+V   +K ++ V DESKLV  LG  KL  PVEVVQ    Y   RL  +F+  G +   +  +  K  ITD  N+IIDL
Sbjct:    4 LKKIAGVTAAQYVTDGMTIGLGTGSTAYYFVEEIGRRIKEEGLQ-VVGVTTSSVTTKQAEGLGIPLTSIDDIDCIDLTVDGADEVDKAFNGIKGGGAALLMEKIVATPTKEYIWVVDESKLVDHLGAFKL--PVEVVQ----YGADRLFRVFERAGYKPSFRM-KGDKRLITDMQNFIIDL 176          
BLAST of CB290908 vs. ExPASy Swiss-Prot
Match: RPIA_PROMP (Ribose-5-phosphate isomerase A OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rpiA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.193e-33
Identity = 75/188 (39.89%), Postives = 117/188 (62.23%), Query Frame = 2
Query:  218 LKKLAADKAVDYVKSGMALGLGTGSTGAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFKELGCEAKLKEG-ENGKPYITDNFNYIIDLYIKTAI 778
            +K++ AD A++ V+ GM LGLG+GST A ++  + + +++G+L++I G+PTS ++E  A  LNIPL  L   P +DLAIDGADEVDP+  L+KG G   +REK+V + +   ++V DESKLV  L      +PVEV+   WK    +++D+  E+   + L+   +   P +TD  N I+D+     I
Sbjct:    1 MKQIVADSAIEEVEDGMILGLGSGSTAALMIKSLAEKIRSGKLKNIKGVPTSFQSEVLALELNIPLIDLASVPYIDLAIDGADEVDPDFQLIKGGGACHVREKLVASKANKLLIVIDESKLVQNL-NQVFPLPVEVMPSAWK----QVKDIISEMSGVSNLRMATKKAGPVVTDQGNLILDVLFDAGI 183          
BLAST of CB290908 vs. ExPASy Swiss-Prot
Match: RPIA_THET8 (Ribose-5-phosphate isomerase A OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=rpiA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.477e-33
Identity = 84/182 (46.15%), Postives = 116/182 (63.74%), Query Frame = 2
Query:  212 DDLKKLAADKAVDYVKSGMALGLGTGSTGAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFKELGCEAKLKEGENGKPYITDNFNYIID 757
            +  KK AA  A+ YV+ GM +GLGTGST  + V ++ + L+ GEL+ +VG+PTS+ TEE AK   IPL  L     +DLAIDGADE+ P L L+KG GGALLREK+VE  +K F+V+AD +K V  LG  +  +PVE+V F ++  L  + D    LG E +L+  +  + Y TD  + I D
Sbjct:    6 ESYKKEAAHAAIAYVQDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATEELAKREGIPLVDLPPE-GVDLAIDGADEIAPGLALIKGMGGALLREKIVERVAKEFIVIADHTKKVPVLG--RGPVPVEIVPFGYRATLKAIAD----LGGEPELRM-DGDEFYFTDGGHLIAD 179          
BLAST of CB290908 vs. ExPASy Swiss-Prot
Match: RPIA_SYNPX (Ribose-5-phosphate isomerase A OS=Synechococcus sp. (strain WH8102) GN=rpiA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.477e-33
Identity = 82/191 (42.93%), Postives = 117/191 (61.26%), Query Frame = 2
Query:  209 QDDLKKLAADKAVDYVKSGMALGLGTGSTGAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFKELGCEAKLKEGE-NGKPYITDNFNYIIDLYIKTAI 778
            Q  +K+  AD AV+ +K GM LGLG+GST A ++  +G  L +GEL+DIVG+ TS + E  A  LNIPL +L+    +DLAIDGADEVDP   L+KG G   ++EK+V A +  FVVV D +KLV  L    L +PVEV+   W+    ++Q     LG +A+L+  +    P +TD  N ++D+ +   I
Sbjct:    5 QTQMKQAVADAAVEQIKDGMVLGLGSGSTAALMIKALGAKLASGELKDIVGVTTSFQGEVLAAELNIPLLSLNAVDRIDLAIDGADEVDPGFQLIKGGGACHVQEKLVAARADRFVVVVDSTKLVERLNLGFL-LPVEVLPGAWR----QVQQQLAALGGKAELRMAQRKAGPVVTDQGNLVLDVTMNGGI 190          
BLAST of CB290908 vs. ExPASy Swiss-Prot
Match: RPIA_LACLM (Ribose-5-phosphate isomerase A OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=rpiA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.477e-33
Identity = 81/185 (43.78%), Postives = 116/185 (62.70%), Query Frame = 2
Query:  212 DDLKKLAADKAVDYVKSGMALGLGTGSTGAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFKELGCEAKLKEGENGKPYITDNFNYIIDLYI 766
            ++LKK    KA ++VKSGM +GLGTGST A+ V+++G+ +   +L +I G+ TS  T EQAK+L IPL ++D+   +DL +DGADE+D  LN +KG G ALL EK+V   SK ++ + DESKL   LG  K  +PVEV+     Y   +L   F+        +  E G+  ITD  ++IIDL+I
Sbjct:    2 ENLKKQVGIKAAEFVKSGMVVGLGTGSTAAYFVEELGRRVAEEQL-EITGVTTSSVTSEQAKALGIPLASIDEVDYVDLTVDGADEIDSHLNGIKGGGAALLMEKIVATYSKDYIWIVDESKLSENLGSFK--VPVEVI----TYGSEQLFKEFERAAYAPTWRLNEEGEKLITDMQHFIIDLHI 179          
The following BLAST results are available for this feature:
BLAST of CB290908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 458
Match NameE-valueIdentityDescription
RPIA_STRS72.458e-3348.07Ribose-5-phosphate isomerase A OS=Streptococcus eq... [more]
RPIA_STRPN2.458e-3344.81Ribose-5-phosphate isomerase A OS=Streptococcus pn... [more]
RPIA_STREM2.458e-3348.07Ribose-5-phosphate isomerase A OS=Streptococcus eq... [more]
RPIA_LACLS2.458e-3343.78Ribose-5-phosphate isomerase A OS=Lactococcus lact... [more]
RPIA_STRSV4.193e-3345.36Ribose-5-phosphate isomerase A OS=Streptococcus sa... [more]
RPIA_STRE44.193e-3347.51Ribose-5-phosphate isomerase A OS=Streptococcus eq... [more]
RPIA_PROMP4.193e-3339.89Ribose-5-phosphate isomerase A OS=Prochlorococcus ... [more]
RPIA_THET85.477e-3346.15Ribose-5-phosphate isomerase A OS=Thermus thermoph... [more]
RPIA_SYNPX5.477e-3342.93Ribose-5-phosphate isomerase A OS=Synechococcus sp... [more]
RPIA_LACLM5.477e-3343.78Ribose-5-phosphate isomerase A OS=Lactococcus lact... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ac10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ac10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290908 ID=CB290908; Name=CB290908; organism=Citrus sinensis; type=EST; length=780bp
GAACAACTTCTCACAACTCACATCTCATTTATTTTCCTCTCAAACTCACC
CCATCACCACCACAGCCTCCGCCCAAGAAAAATGACATTCTTTATCCTTC
CTCCCCACTCTCCATCTCTCCACCTCCGCTCACTTCCTCCCACGCGCCCC
CAAATCCCTCAGACCACGCGCCATTTCCATCAAAGCCCAGGCCGTCCCGG
CCCTCACCCAAGACGACTTGAAGAAGCTCGCCGCCGACAAGGCCGTTGAC
TACGTCAAATCCGGCATGGCCCTCGGCCTCGGTACCGGCTCCACCGGCGC
CTTCGTCGTCGACAAGATCGGCCAACTCTTGAAAACCGGCGAGTTAAGGG
ACATCGTCGGAATCCCAACTTCAAAACGCACGGAAGAGCAAGCCAAGTCG
CTTAACATTCCCTTAACCACACTTGACGATCACCCATCACTGGATTTGGC
CATTGACGGCGCCGATGAGGTTGACCCAGAATTGAACCTCGTTAAAGGCC
GAGGCGGGGCGCTTTTGAGAGAGAAGATGGTGGAAGCTGCGTCCAAAAGC
TTCGTTGTTGTGGCTGATGAGAGTAAATTAGTGAGCGGACTCGGTGGGAG
TAAGCTTGCGATGCCAGTTGAAGTGGTTCAGTTTTGCTGGAAATACAATT
TGGTTAGGCTTCAAGACTTGTTCAAGGAACTGGGTTGTGAGGCCAAGCTT
AAAGAAGGGGAAAACGGGAAGCCTTATATCACTGATAATTTTAACTACAT
TATCGATTTGTATATCAAGACGGCCATTAA
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