CB290908

Overview
NameCB290908
Unique NameCB290908
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290908 vs. ExPASy Swiss-Prot
Match: RPIA_STRPC (Ribose-5-phosphate isomerase A OS=Streptococcus pyogenes serotype M12 (strain MGAS9429) GN=rpiA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.081e-32
Identity = 83/181 (45.86%), Postives = 114/181 (62.98%), Query Frame = 2
Query:  218 LKKLAADKAVDYVKSGMALGLGTGSTGAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFKELGCEAKLKEGENGKPYITDNFNYIIDL 760
            LKK+A   A  YV  GM +GLGTGST  + V++IG+ +K   L+ +VG+ TS  T +QA+ L IPL ++DD  S+DL +DGADEVD + N +KG G ALL EK+V   +K ++ V D SK+V  LG  KL  PVEVVQ    Y   RL  +F++ G +   +   + +  +TD  NYIIDL
Sbjct:    4 LKKIAGVTAAQYVTDGMTIGLGTGSTAYYFVEEIGRRVKQEGLQ-VVGVTTSSVTSKQAEGLGIPLKSIDDIDSIDLTVDGADEVDKDFNGIKGGGAALLMEKIVATPTKEYIWVVDASKMVEHLGAFKL--PVEVVQ----YGADRLFRVFEKAGYKPSFRMKGDSR-LVTDMQNYIIDL 176          
BLAST of CB290908 vs. ExPASy Swiss-Prot
Match: RPIA_STRPB (Ribose-5-phosphate isomerase A OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) GN=rpiA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.081e-32
Identity = 83/181 (45.86%), Postives = 114/181 (62.98%), Query Frame = 2
Query:  218 LKKLAADKAVDYVKSGMALGLGTGSTGAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFKELGCEAKLKEGENGKPYITDNFNYIIDL 760
            LKK+A   A  YV  GM +GLGTGST  + V++IG+ +K   L+ +VG+ TS  T +QA+ L IPL ++DD  S+DL +DGADEVD + N +KG G ALL EK+V   +K ++ V D SK+V  LG  KL  PVEVVQ    Y   RL  +F++ G +   +   + +  +TD  NYIIDL
Sbjct:    4 LKKIAGVTAAQYVTDGMTIGLGTGSTAYYFVEEIGRRVKQEGLQ-VVGVTTSSVTSKQAEGLGIPLKSIDDIDSIDLTVDGADEVDKDFNGIKGGGAALLMEKIVATPTKEYIWVVDASKMVEHLGAFKL--PVEVVQ----YGADRLFRVFEKAGYKPSFRMKGDSR-LVTDMQNYIIDL 176          
BLAST of CB290908 vs. ExPASy Swiss-Prot
Match: RPIA_STRP6 (Ribose-5-phosphate isomerase A OS=Streptococcus pyogenes serotype M6 GN=rpiA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.081e-32
Identity = 83/181 (45.86%), Postives = 114/181 (62.98%), Query Frame = 2
Query:  218 LKKLAADKAVDYVKSGMALGLGTGSTGAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFKELGCEAKLKEGENGKPYITDNFNYIIDL 760
            LKK+A   A  YV  GM +GLGTGST  + V++IG+ +K   L+ +VG+ TS  T +QA+ L IPL ++DD  S+DL +DGADEVD + N +KG G ALL EK+V   +K ++ V D SK+V  LG  KL  PVEVVQ    Y   RL  +F++ G +   +   + +  +TD  NYIIDL
Sbjct:    4 LKKIAGVTAAQYVTDGMTIGLGTGSTAYYFVEEIGRRVKQEGLQ-VVGVTTSSVTSKQAEGLGIPLKSIDDIDSIDLTVDGADEVDKDFNGIKGGGAALLMEKIVATPTKEYIWVVDASKMVEHLGAFKL--PVEVVQ----YGADRLFRVFEKAGYKPSFRMKGDSR-LVTDMQNYIIDL 176          
BLAST of CB290908 vs. ExPASy Swiss-Prot
Match: RPIA_PEDPA (Ribose-5-phosphate isomerase A OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=rpiA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.081e-32
Identity = 78/188 (41.49%), Postives = 122/188 (64.89%), Query Frame = 2
Query:  203 LTQDDLKKLAADKAVDYVKSGMALGLGTGSTGAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFKELGCEAKLKEGENGKPYITDNFNYIIDLYI 766
            + Q++LKKL  ++AV +++ GM +GLGTGST  F+VD +G+ +K   L +IVG+PTS RT EQA+SL I + ++D+   +DL IDGADE+  +   +KG G A L EK+V   SK  + + DESK+V  LG     +P+EV+ +  K    +L+   KE G   + ++ + G+  +TD+ NY+IDL++
Sbjct:    1 MDQNELKKLVGEEAVKFIEDGMTVGLGTGSTVKFMVDALGERVKNENL-NIVGVPTSDRTAEQARSLGINVKSVDEVDHIDLTIDGADEISSDFQGIKGGGAAHLFEKIVATNSKKVMWIVDESKMVDHLGA--FPLPLEVIPYGSKQVFKKLE---KE-GLHPEFRKNDAGEYVLTDSKNYVIDLHL 181          
BLAST of CB290908 vs. ExPASy Swiss-Prot
Match: RPIA_LACRJ (Ribose-5-phosphate isomerase A OS=Lactobacillus reuteri (strain JCM 1112) GN=rpiA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.081e-32
Identity = 78/188 (41.49%), Postives = 120/188 (63.83%), Query Frame = 2
Query:  203 LTQDDLKKLAADKAVDYVKSGMALGLGTGSTGAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFKELGCEAKLKEGENGKPYITDNFNYIIDLYI 766
            + Q+ LK+    ++V Y+KSGM +GLGTGST  ++VD++G+ ++ G+++DI+G+ TS RT +QA+ L I +  +DD   +DL IDGADE+  +   +KG GGALL EK+V  AS   + + DESKLV  LG     +PVEV+ F  ++   RL+    + G +   +  +  K + TD  NYIIDL++
Sbjct:    1 MDQNALKEQTGKESVKYIKSGMIVGLGTGSTVKYMVDELGKQVQEGKIKDIIGVTTSNRTAKQARDLGITIKDIDDVDHIDLTIDGADEISDDFQGIKGGGGALLWEKIVANASNKVMWIVDESKLVHKLGA--FPLPVEVIPFGSQHVFDRLE----KKGYKPTWRM-DGDKKFRTDENNYIIDLHL 181          
BLAST of CB290908 vs. ExPASy Swiss-Prot
Match: RPIA_LACRD (Ribose-5-phosphate isomerase A OS=Lactobacillus reuteri (strain DSM 20016) GN=rpiA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.081e-32
Identity = 78/188 (41.49%), Postives = 120/188 (63.83%), Query Frame = 2
Query:  203 LTQDDLKKLAADKAVDYVKSGMALGLGTGSTGAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFKELGCEAKLKEGENGKPYITDNFNYIIDLYI 766
            + Q+ LK+    ++V Y+KSGM +GLGTGST  ++VD++G+ ++ G+++DI+G+ TS RT +QA+ L I +  +DD   +DL IDGADE+  +   +KG GGALL EK+V  AS   + + DESKLV  LG     +PVEV+ F  ++   RL+    + G +   +  +  K + TD  NYIIDL++
Sbjct:    1 MDQNALKEQTGKESVKYIKSGMIVGLGTGSTVKYMVDELGKQVQEGKIKDIIGVTTSNRTAKQARDLGITIKDIDDVDHIDLTIDGADEISDDFQGIKGGGGALLWEKIVANASNKVMWIVDESKLVHKLGA--FPLPVEVIPFGSQHVFDRLE----KKGYKPTWRM-DGDKKFRTDENNYIIDLHL 181          
BLAST of CB290908 vs. ExPASy Swiss-Prot
Match: RPIA_BARBK (Ribose-5-phosphate isomerase A OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=rpiA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.081e-32
Identity = 75/186 (40.32%), Postives = 117/186 (62.90%), Query Frame = 2
Query:  203 LTQDDLKKLAADKAVDYVKSGMALGLGTGSTGAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFKELGCEAKLKEGENG-KPYITDNFNYIID 757
            +   +LKK+AA KA+++V+ GM LG+G+GST    +  +G+ +  G    ++G+ TS  +E+  + + +P+TTL+  P LDL IDGADE+ P + L+KG GGALLREK+V AAS   +++ADE+K+V  LG    A+P+ V QF        ++ + K LG   K+    NG  P+ TD+ ++I D
Sbjct:    1 MNAQELKKVAAAKALEFVQDGMRLGIGSGSTANEFIRLLGERVANG--LHVIGVATSHYSEQLCRQVGVPVTTLEQIPELDLDIDGADEIGPNMTLIKGGGGALLREKIVAAASHEMLIIADETKVVKTLGA--FALPIAVNQFGLSVTRSAIEKMAKGLGLSGKVTLRMNGDNPFKTDDGHFIFD 182          
BLAST of CB290908 vs. ExPASy Swiss-Prot
Match: RPIA_SYNS9 (Ribose-5-phosphate isomerase A OS=Synechococcus sp. (strain CC9902) GN=rpiA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.718e-32
Identity = 80/191 (41.88%), Postives = 116/191 (60.73%), Query Frame = 2
Query:  209 QDDLKKLAADKAVDYVKSGMALGLGTGSTGAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFKELGCEAKLKEGE-NGKPYITDNFNYIIDLYIKTAI 778
            Q  +K   AD AV+ +K GM LGLG+GST A ++  +G  L +GEL++IVG+ TS + E  A  LNIPL +L+    +DLAIDGADEVDP   L+KG G   ++EK+V A +  FVVV D +KLV  L    L +PVEV+   W+    ++Q     +G  A+L+  +    P +TD  N ++D+ ++  I
Sbjct:    5 QTQMKHAVADAAVEQIKDGMVLGLGSGSTAALMIRALGAKLASGELKNIVGVTTSFQGEVLAAELNIPLLSLNAVDRIDLAIDGADEVDPSFQLIKGGGACHVQEKLVAAMADRFVVVVDSTKLVDRLNLDFL-LPVEVLPGAWR----QIQKTLAAMGGSAELRMAQRKAGPVVTDQGNLVLDVKLEGGI 190          
BLAST of CB290908 vs. ExPASy Swiss-Prot
Match: RPIA_SILPO (Ribose-5-phosphate isomerase A OS=Silicibacter pomeroyi GN=rpiA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.718e-32
Identity = 82/189 (43.39%), Postives = 119/189 (62.96%), Query Frame = 2
Query:  212 DDLKKLAADKAVDYVKSGMALGLGTGSTGAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDL---FKELGCEAKLKEGENGKPYITDNFNYIIDLYIK 769
            D  K +AA +A D V+ GM +GLGTGST A++V  +G +++   L+ + G+PTS RT + A+ + I + TLD+   LD+ IDGADE D +LNL+KG GGALL+EK+V  AS   VV+AD  K VS LG     +PVEV+ F W+     L++       LG  A L+      P++TD  N+I+DL+++
Sbjct:    9 DKAKFVAAKRAADLVEDGMRVGLGTGSTAAWLVRCLGDMVRKEGLK-MRGVPTSTRTAQLAREVGIEVITLDEARWLDITIDGADEFDGDLNLIKGGGGALLQEKIVATASDQMVVIADLGKEVSRLGA--FPLPVEVIPFGWQTTQALLEETLISMDVLGRTATLRM-NGDTPFVTDEGNHILDLHLQ 193          
BLAST of CB290908 vs. ExPASy Swiss-Prot
Match: RPIA_RHIEC (Ribose-5-phosphate isomerase A OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=rpiA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.718e-32
Identity = 80/182 (43.96%), Postives = 115/182 (63.19%), Query Frame = 2
Query:  215 DLKKLAADKAVDYVKSGMALGLGTGSTGAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFKELGCEAKLKEGENGK-PYITDNFNYIID 757
            ++K  AA+ A+ +V+SGM LG+GTGST    V  + + +  G    + G+PTS+RT      L +PL +LD+ P+LDL +DGADEVDP L L+KG GGALLREK+V AAS+  +V+ADESKLV  LG    A+P+EV  F      + ++ +   LG   +L   ++G   + TD  ++IID
Sbjct:    5 EMKIKAAEAALAHVESGMRLGIGTGSTAEEFVRLLAEKVAGGF--QVEGVPTSERTARLCVELGVPLKSLDELPALDLTVDGADEVDPALRLIKGGGGALLREKIVAAASQRMIVIADESKLVETLGA--FALPIEVNPFGLVSTRIAIEKVAARLGLSGELNLRQSGDGEFTTDGGHHIID 182          
The following BLAST results are available for this feature:
BLAST of CB290908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 458
Match NameE-valueIdentityDescription
RPIA_STRPC2.081e-3245.86Ribose-5-phosphate isomerase A OS=Streptococcus py... [more]
RPIA_STRPB2.081e-3245.86Ribose-5-phosphate isomerase A OS=Streptococcus py... [more]
RPIA_STRP62.081e-3245.86Ribose-5-phosphate isomerase A OS=Streptococcus py... [more]
RPIA_PEDPA2.081e-3241.49Ribose-5-phosphate isomerase A OS=Pediococcus pent... [more]
RPIA_LACRJ2.081e-3241.49Ribose-5-phosphate isomerase A OS=Lactobacillus re... [more]
RPIA_LACRD2.081e-3241.49Ribose-5-phosphate isomerase A OS=Lactobacillus re... [more]
RPIA_BARBK2.081e-3240.32Ribose-5-phosphate isomerase A OS=Bartonella bacil... [more]
RPIA_SYNS92.718e-3241.88Ribose-5-phosphate isomerase A OS=Synechococcus sp... [more]
RPIA_SILPO2.718e-3243.39Ribose-5-phosphate isomerase A OS=Silicibacter pom... [more]
RPIA_RHIEC2.718e-3243.96Ribose-5-phosphate isomerase A OS=Rhizobium etli (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ac10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ac10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290908 ID=CB290908; Name=CB290908; organism=Citrus sinensis; type=EST; length=780bp
GAACAACTTCTCACAACTCACATCTCATTTATTTTCCTCTCAAACTCACC
CCATCACCACCACAGCCTCCGCCCAAGAAAAATGACATTCTTTATCCTTC
CTCCCCACTCTCCATCTCTCCACCTCCGCTCACTTCCTCCCACGCGCCCC
CAAATCCCTCAGACCACGCGCCATTTCCATCAAAGCCCAGGCCGTCCCGG
CCCTCACCCAAGACGACTTGAAGAAGCTCGCCGCCGACAAGGCCGTTGAC
TACGTCAAATCCGGCATGGCCCTCGGCCTCGGTACCGGCTCCACCGGCGC
CTTCGTCGTCGACAAGATCGGCCAACTCTTGAAAACCGGCGAGTTAAGGG
ACATCGTCGGAATCCCAACTTCAAAACGCACGGAAGAGCAAGCCAAGTCG
CTTAACATTCCCTTAACCACACTTGACGATCACCCATCACTGGATTTGGC
CATTGACGGCGCCGATGAGGTTGACCCAGAATTGAACCTCGTTAAAGGCC
GAGGCGGGGCGCTTTTGAGAGAGAAGATGGTGGAAGCTGCGTCCAAAAGC
TTCGTTGTTGTGGCTGATGAGAGTAAATTAGTGAGCGGACTCGGTGGGAG
TAAGCTTGCGATGCCAGTTGAAGTGGTTCAGTTTTGCTGGAAATACAATT
TGGTTAGGCTTCAAGACTTGTTCAAGGAACTGGGTTGTGAGGCCAAGCTT
AAAGAAGGGGAAAACGGGAAGCCTTATATCACTGATAATTTTAACTACAT
TATCGATTTGTATATCAAGACGGCCATTAA
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