CB290909

Overview
NameCB290909
Unique NameCB290909
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length537
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.806e-28
Identity = 59/118 (50.00%), Postives = 81/118 (68.64%), Query Frame = -2
Query:  123 YMALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 476
            Y A+     V+ +CMV+  PIAQA +TCGQV+S+L  C+PYV           CC+GI+++N+ A TTPDRQ+ CNCLK  + S+  +N N A+ LP +CGVNIPYQISPS +C+ V+
Sbjct:    3 YSAMTKLALVVALCMVVSVPIAQA-ITCGQVSSNLAPCIPYVRGGGAVPPA--CCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTNCANVK 117          
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.689e-27
Identity = 62/117 (52.99%), Postives = 82/117 (70.09%), Query Frame = -2
Query:  123 MALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 473
            MA+ + CA +  CMV+GAP  +A ++CGQV+SSL  C+ Y+T          CCSG+KSLNSAA TTPDRQ+ C CLK+A  SI  +N   A+  P +CGV+IPY+ISPS DCS+V+
Sbjct:    4 MAMMVLCAGVT-CMVVGAPYTEA-LSCGQVSSSLAPCISYLTKGGAVPPA--CCSGVKSLNSAAKTTPDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSKVQ 116          
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLTP3_PRUDU (Non-specific lipid-transfer protein 3 OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.882e-27
Identity = 62/118 (52.54%), Postives = 77/118 (65.25%), Query Frame = -2
Query:  123 LKLACAVLLMC-MVMGAPIAQAAVTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSI--RNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 467
            LKL C V +MC M +G P A AAV+CGQV ++L  C+ YV           CC+G++SL S A TT DRQS+CNCLK A   I   N N  LA+GLP +CGVNIPY+ISPS DC  ++
Sbjct:    8 LKLVCLVAVMCCMAVGGPKAMAAVSCGQVVNNLTPCINYVANGGALNPS--CCTGVRSLYSLAQTTADRQSICNCLKQAVNGIPYTNANAGLAAGLPGKCGVNIPYKISPSTDCKSIK 123          
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLTP2_SORBI (Non-specific lipid-transfer protein 2 OS=Sorghum bicolor GN=LTP2 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.186e-26
Identity = 57/120 (47.50%), Postives = 79/120 (65.83%), Query Frame = -2
Query:  126 RTLYMALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRV 485
            R++ +A+ +A       +V+ A  ++AAVTCGQV+S++  C+ Y            CCSG++SLNSAA TT DR++ CNCLK AA  IR LN+  A+ +P +CGV+IPY IS S DCSRV
Sbjct:    3 RSMKLAVAIAVVAAAAAVVLAATTSEAAVTCGQVSSAIGPCLSYARGQGSGPSAG-CCSGVRSLNSAARTTADRRAACNCLKNAARGIRGLNVGKAASIPSKCGVSIPYTISTSTDCSRV 121          
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLLC (Non-specific lipid-transfer protein 1 OS=Solanum lycopersicum GN=TSW12 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.186e-26
Identity = 60/117 (51.28%), Postives = 81/117 (69.23%), Query Frame = -2
Query:  123 MALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 473
            M  K+AC VLL CMV+ AP A+A +TCGQVT+ L  C+PY+           CC G+K+L  +A TT DR++ C CLK+AA +I+ ++LN A+G+P  C VNIPY+ISPS DCS V+
Sbjct:    3 MVSKIACFVLL-CMVVVAPHAEA-LTCGQVTAGLAPCLPYLQGRGPLGG---CCGGVKNLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLPN (Non-specific lipid-transfer protein 1 OS=Solanum pennellii GN=LTP1 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.161e-26
Identity = 60/117 (51.28%), Postives = 80/117 (68.38%), Query Frame = -2
Query:  123 MALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 473
            M  K+AC VLL CMV+ AP A+A +TCGQVT+ L  C+PY+           CC G+K L  +A TT DR++ C CLK+AA +I+ ++LN A+G+P  C VNIPY+ISPS DCS V+
Sbjct:    3 MVSKIACFVLL-CMVVVAPHAEA-LTCGQVTAGLAPCLPYLQGRGPLGG---CCGGVKGLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLPN (Non-specific lipid-transfer protein 2 OS=Solanum pennellii GN=LTP2 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 7.097e-26
Identity = 62/117 (52.99%), Postives = 77/117 (65.81%), Query Frame = -2
Query:  123 MALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 473
            M  K+AC VLL CMV+ AP A+A +TCGQVTS+L  C+PY+           CC G+K L   A TT DRQ+ C CLK+AA S   L+L  A+ LP  C VNIPY+ISPS DCS+V+
Sbjct:    3 MVNKIACFVLL-CMVVVAPHAEA-LTCGQVTSTLAPCLPYLMNRGPLGG---CCGGVKGLLGQAQTTVDRQTACTCLKSAASSFTGLDLGKAASLPSTCSVNIPYKISPSTDCSKVQ 114          
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLTP6_GOSHI (Non-specific lipid-transfer protein 6 OS=Gossypium hirsutum GN=LTP6 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 9.270e-26
Identity = 57/117 (48.72%), Postives = 78/117 (66.67%), Query Frame = -2
Query:  123 MALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 473
            M+LKLAC V+L C+++ AP+AQ A++  QV SSL  C+ YV            C GI+SL SAA    DRQ+ C C+K+ A  I ++N  +A+GLP QC V+IPY+ISPS+DC RV+
Sbjct:    5 MSLKLACVVVL-CLLVDAPLAQGAISYDQVKSSLLPCVGYVRGNNARPAPPNYCKGIRSLKSAARIRLDRQAACKCIKSLAADISDINYGVAAGLPGQCNVHIPYKISPSIDCKRVK 120          
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLCI (Non-specific lipid-transfer protein 2 OS=Solanum chilense PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 9.270e-26
Identity = 62/117 (52.99%), Postives = 78/117 (66.67%), Query Frame = -2
Query:  123 MALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 473
            M  K+AC VLL CMV+ AP A+A +TCGQVTS+L  C+PY+           CC G+K L   A TT DRQ+ C CLK+AA S  +L+L  A+ LP  C VNIPY+ISPS DCS+V+
Sbjct:    3 MVNKIACFVLL-CMVVVAPHAEA-LTCGQVTSTLAPCLPYLMNRGPLGG---CCGGVKGLLGQAQTTVDRQAACACLKSAASSFTDLDLGKAASLPSTCNVNIPYKISPSTDCSKVQ 114          
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLTP1_ARATH (Non-specific lipid-transfer protein 1 OS=Arabidopsis thaliana GN=LTP1 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.600e-25
Identity = 59/117 (50.43%), Postives = 79/117 (67.52%), Query Frame = -2
Query:  123 LKLACAVLLMCMVMGAPI-AQAAVTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSI-RNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 467
            +KLAC +LL CM++  PI + AA++CG V S+L AC+ YV           CCSG+K+LNS A TTPDRQ  CNC++ AA ++   LN   A+G+P+ CGVNIPY+IS S +C  VR
Sbjct:    5 MKLAC-LLLACMIVAGPITSNAALSCGSVNSNLAACIGYVLQGGVIPPA--CCSGVKNLNSIAKTTPDRQQACNCIQGAARALGSGLNAGRAAGIPKACGVNIPYKISTSTNCKTVR 118          
The following BLAST results are available for this feature:
BLAST of CB290909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP1_PRUDU5.806e-2850.00Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
NLTP_HELAN1.689e-2752.99Non-specific lipid-transfer protein OS=Helianthus ... [more]
NLTP3_PRUDU2.882e-2752.54Non-specific lipid-transfer protein 3 OS=Prunus du... [more]
NLTP2_SORBI3.186e-2647.50Non-specific lipid-transfer protein 2 OS=Sorghum b... [more]
NLTP1_SOLLC3.186e-2651.28Non-specific lipid-transfer protein 1 OS=Solanum l... [more]
NLTP1_SOLPN4.161e-2651.28Non-specific lipid-transfer protein 1 OS=Solanum p... [more]
NLTP2_SOLPN7.097e-2652.99Non-specific lipid-transfer protein 2 OS=Solanum p... [more]
NLTP6_GOSHI9.270e-2648.72Non-specific lipid-transfer protein 6 OS=Gossypium... [more]
NLTP2_SOLCI9.270e-2652.99Non-specific lipid-transfer protein 2 OS=Solanum c... [more]
NLTP1_ARATH4.600e-2550.43Non-specific lipid-transfer protein 1 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ac11_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ac11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290909 ID=CB290909; Name=CB290909; organism=Citrus sinensis; type=EST; length=537bp
ATGCATACTACTAATACTCTCTTGACCTAGGAGAGTCCATATCACCCACT
TTATTATTCCATTTTATATTCATATTATATATAATAATACTTCAGCATAT
ATTCTCTTTTCCAAGATCTTCATCTCACTCTGCTGCAGTCAACGGATGGG
CTGATTTGGTAAGGAATGTTGACGCCACACTGGCGTGGGAGGCCAGAAGC
GAGGTTGAGGTTGAGGTTTCTGATGGAGCCAGCAGCGGTTTTCAAGCAGT
TGCAAACGCTCTGGCGGTCGGGTGTGGTGGTGGCTGCGGAGTTAAGACTC
TTAATCCCGCTACAGCAGGGTGGGGGCACAGCGCCTCCACCGGGGCCCGT
CACATATGGCATGCACGCTTGAAGAGAGCTTGTCACTTGGCCACATGTGA
CGGCAGCTTGGGCAATGGGCGCACCCATCACCATGCACATTAGCAGCACA
GCACAAGCAAGCTTAAGAGCCATGTATAATGTTCTTAATTAGCTCTGAGA
AATGAGAATGTTGCTTAACTTGGAACTTTTCCTCGTG
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