CB290909

Overview
NameCB290909
Unique NameCB290909
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length537
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLTP_DAUCA (Non-specific lipid-transfer protein OS=Daucus carota GN=EP2 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.008e-25
Identity = 52/110 (47.27%), Postives = 75/110 (68.18%), Query Frame = -2
Query:  126 AVLLMCMVMGA-PIAQAAVTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRV 452
            A+++M MV+   P A+A +TCGQVT +L  C+ Y+           CC+ ++ LN+AA TT D+++ C CLK  A ++  LNLN A+GLP +CGVNIPY+ISP+ DC+RV
Sbjct:   10 AMMVMYMVLATTPNAEAVLTCGQVTGALAPCLGYLRSQVNVPVPLTCCNVVRGLNNAARTTLDKRTACGCLKQTANAVTGLNLNAAAGLPARCGVNIPYKISPTTDCNRV 119          
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.008e-25
Identity = 52/93 (55.91%), Postives = 69/93 (74.19%), Query Frame = -2
Query:  123 VTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 401
            +TCGQV+SSL  C+ Y+           CC+G++SLN+AA TT DRQ+ CNCLK+A  SI+ LNLNLA+GLP +CGV++PY+ISPS DC  V+
Sbjct:    1 ITCGQVSSSLAPCINYLRAGGVVPAN--CCNGVRSLNNAAKTTADRQAACNCLKSAFNSIKGLNLNLAAGLPGKCGVSVPYKISPSTDCKSVK 91          
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 7.847e-25
Identity = 57/114 (50.00%), Postives = 78/114 (68.42%), Query Frame = -2
Query:  123 KLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 464
            KLA  V L CMV+  PIAQA +TCGQV+S+L  C+ YV           CC+GI+++N+ A TT DRQ+ CNCLK  + S+  +N N A+ LP +CGVN+PY+ISPS +C+ V+
Sbjct:    8 KLALVVAL-CMVVSVPIAQA-LTCGQVSSNLAPCIAYVRGGGAVPPA--CCNGIRNINNLAKTTADRQTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTNCATVK 117          
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLTP_BETVU (Non-specific lipid-transfer protein OS=Beta vulgaris GN=IWF1' PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.339e-24
Identity = 55/114 (48.25%), Postives = 77/114 (67.54%), Query Frame = -2
Query:  126 LKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRV 467
            +K  CA L+MCM++ AP+A+A +TCG V S L  C+ Y+           CC GIKSLNSAA +  DR++ C CLK+AA SI+ +N   A+ LPRQCGV++PY ISP+ +C+ +
Sbjct:    7 VKFTCA-LVMCMMVAAPLAEA-ITCGLVASKLAPCIGYLQGAPGPSAA--CCGGIKSLNSAAASPADRKTACTCLKSAATSIKGINYGKAASLPRQCGVSVPYAISPNTNCNAI 116          
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLT2B_ORYSJ (Non-specific lipid-transfer protein 2B OS=Oryza sativa subsp. japonica GN=LTP2-B PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.339e-24
Identity = 53/109 (48.62%), Postives = 71/109 (65.14%), Query Frame = -2
Query:  126 AVLLMCMVMGAPIAQAAVTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRV 452
            A++   ++ G     AA++CGQV S++  C+ Y            CCSG++SLNSAATTT DR++ CNCLK  AGSI  LN   A+ +P +CGV+IPY ISPS+DCS V
Sbjct:   10 ALVAALLLAGPHTTMAAISCGQVNSAVSPCLSYARGGSGPSAA--CCSGVRSLNSAATTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 116          
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLTP2_TOBAC (Non-specific lipid-transfer protein 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.748e-24
Identity = 57/117 (48.72%), Postives = 79/117 (67.52%), Query Frame = -2
Query:  123 MALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 473
            M  K+AC V+L CMV+ AP A+A ++CGQV S L  C+PY+           CC G+K L  AA +  DR++ C CLK+AA +I+ +++  A+GLP  CGVNIPY+ISPS DCS+V+
Sbjct:    3 MVGKIACFVVL-CMVVVAPHAEA-LSCGQVQSGLAPCLPYLQGRGPLGS---CCGGVKGLLGAAKSLSDRKTACTCLKSAANAIKGIDMGKAAGLPGACGVNIPYKISPSTDCSKVQ 114          
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLTP2_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP2-A PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.283e-24
Identity = 54/114 (47.37%), Postives = 71/114 (62.28%), Query Frame = -2
Query:  126 LKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRV 467
            L L   V    ++ G     AA++CGQV S++  C+ Y            CCSG++SLNSAA+TT DR++ CNCLK  AGSI  LN   A+ +P +CGV+IPY ISPS+DCS V
Sbjct:    6 LVLVALVAAALLLAGPHTTMAAISCGQVNSAVSPCLSYARGGSGPSAA--CCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLT2A_ORYSJ (Non-specific lipid-transfer protein 2A OS=Oryza sativa subsp. japonica GN=LTP2-A PE=3 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 2.283e-24
Identity = 54/114 (47.37%), Postives = 71/114 (62.28%), Query Frame = -2
Query:  126 LKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRV 467
            L L   V    ++ G     AA++CGQV S++  C+ Y            CCSG++SLNSAA+TT DR++ CNCLK  AGSI  LN   A+ +P +CGV+IPY ISPS+DCS V
Sbjct:    6 LVLVALVAAALLLAGPHTTMAAISCGQVNSAVSPCLSYARGGSGPSAA--CCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLTP4_ORYSJ (Non-specific lipid-transfer protein 4 OS=Oryza sativa subsp. japonica GN=Os12g0114500 PE=3 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 2.982e-24
Identity = 55/113 (48.67%), Postives = 73/113 (64.60%), Query Frame = -2
Query:  126 KLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRV 464
            K   AV+++ +++ AP A +AVTCGQV S L  C+ Y T          CC G+++LNSAA TT DRQ+ C CLK    ++  L  +L +G+P +CGVNIPY ISPS DCSRV
Sbjct:    8 KYVAAVMVVALLLAAPAA-SAVTCGQVVSMLAPCIMYATGRVSAPTGG-CCDGVRTLNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSKCGVNIPYAISPSTDCSRV 118          
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLTPB_BRAOT (Non-specific lipid-transfer protein B OS=Brassica oleracea var. italica GN=WAX9B PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.894e-24
Identity = 57/116 (49.14%), Postives = 76/116 (65.52%), Query Frame = -2
Query:  123 LKLACAVLLMCMVMGAPIA-QAAVTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 467
            +KL+C VL  CM++  PIA  AA++CG V+ +L AC+ Y+T          CC+G+ +LN+ A TTPDRQ  C CL  AA S   LN   A+GLP+ CGVNIPY+IS S +C+ VR
Sbjct:    5 VKLSCLVLA-CMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPLPRG--CCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
The following BLAST results are available for this feature:
BLAST of CB290909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP_DAUCA6.008e-2547.27Non-specific lipid-transfer protein OS=Daucus caro... [more]
LTP1_MORNI6.008e-2555.91Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP_PRUAV7.847e-2550.00Non-specific lipid-transfer protein OS=Prunus aviu... [more]
NLTP_BETVU1.339e-2448.25Non-specific lipid-transfer protein OS=Beta vulgar... [more]
NLT2B_ORYSJ1.339e-2448.62Non-specific lipid-transfer protein 2B OS=Oryza sa... [more]
NLTP2_TOBAC1.748e-2448.72Non-specific lipid-transfer protein 2 OS=Nicotiana... [more]
NLTP2_ORYSI2.283e-2447.37Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLT2A_ORYSJ2.283e-2447.37Non-specific lipid-transfer protein 2A OS=Oryza sa... [more]
NLTP4_ORYSJ2.982e-2448.67Non-specific lipid-transfer protein 4 OS=Oryza sat... [more]
NLTPB_BRAOT3.894e-2449.14Non-specific lipid-transfer protein B OS=Brassica ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ac11_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ac11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290909 ID=CB290909; Name=CB290909; organism=Citrus sinensis; type=EST; length=537bp
ATGCATACTACTAATACTCTCTTGACCTAGGAGAGTCCATATCACCCACT
TTATTATTCCATTTTATATTCATATTATATATAATAATACTTCAGCATAT
ATTCTCTTTTCCAAGATCTTCATCTCACTCTGCTGCAGTCAACGGATGGG
CTGATTTGGTAAGGAATGTTGACGCCACACTGGCGTGGGAGGCCAGAAGC
GAGGTTGAGGTTGAGGTTTCTGATGGAGCCAGCAGCGGTTTTCAAGCAGT
TGCAAACGCTCTGGCGGTCGGGTGTGGTGGTGGCTGCGGAGTTAAGACTC
TTAATCCCGCTACAGCAGGGTGGGGGCACAGCGCCTCCACCGGGGCCCGT
CACATATGGCATGCACGCTTGAAGAGAGCTTGTCACTTGGCCACATGTGA
CGGCAGCTTGGGCAATGGGCGCACCCATCACCATGCACATTAGCAGCACA
GCACAAGCAAGCTTAAGAGCCATGTATAATGTTCTTAATTAGCTCTGAGA
AATGAGAATGTTGCTTAACTTGGAACTTTTCCTCGTG
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