CB290909

Overview
NameCB290909
Unique NameCB290909
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length537
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLTP_MAIZE (Non-specific lipid-transfer protein OS=Zea mays PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.345e-23
Identity = 53/120 (44.17%), Postives = 75/120 (62.50%), Query Frame = -2
Query:  126 RTLYMALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRV 485
            RT  +A+     V L+  ++ A  ++AA++CGQV S++  C+ Y            CCSG++SLN+AA TT DR++ CNCLK AA  +  LN   A+ +P +CGV+IPY IS S DCSRV
Sbjct:    3 RTQQLAVVATAVVALV--LLAAATSEAAISCGQVASAIAPCISYARGQGSGPSAG-CCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV 119          
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLTPA_BRAOT (Non-specific lipid-transfer protein A OS=Brassica oleracea var. italica GN=WAX9A PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.253e-22
Identity = 53/117 (45.30%), Postives = 76/117 (64.96%), Query Frame = -2
Query:  123 LKLACAVLLMCMVMGAPI-AQAAVTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSI-RNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 467
            +KLAC VL  CM++  PI A  A+TCG V S++  C+ Y+T          CC+G+  LNS A TTPDRQ  C CL+TAA ++  NLN   A+G+P+ CGV++P+ IS + +C+ V+
Sbjct:    5 MKLACLVLA-CMIVAGPITANRALTCGTVNSNVAPCIGYITQGGTLPGA--CCTGVSKLNSMARTTPDRQQACRCLETAARALGPNLNAGRAAGIPKACGVSVPFPISTNTNCNNVK 118          
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLTP3_ARATH (Non-specific lipid-transfer protein 3 OS=Arabidopsis thaliana GN=LTP3 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.645e-22
Identity = 51/111 (45.95%), Postives = 70/111 (63.06%), Query Frame = -2
Query:  123 CAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 455
            C VL +C+V       AA++CG V  SL  C  Y++          CC+G+K+LNS A TTPDRQ  C C+++ A SI  LN +LASGLP +CGV+IPY IS S +C+ ++
Sbjct:   10 CLVLTVCIVASV---DAAISCGTVAGSLAPCATYLSKGGLVPPS--CCAGVKTLNSMAKTTPDRQQACRCIQSTAKSISGLNPSLASGLPGKCGVSIPYPISMSTNCNNIK 115          
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLTP_GERHY (Non-specific lipid-transfer protein OS=Gerbera hybrida PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 8.121e-22
Identity = 50/116 (43.10%), Postives = 73/116 (62.93%), Query Frame = -2
Query:  126 MALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRV 473
            M + + C V + CMV  A  A A ++CGQVTS L  C  Y+           CC+G++ LN+AA TTPDRQ+ C CLK    +   +NLN A+ LP +CG++I Y+I+P++DCS++
Sbjct:    4 MVMNVLC-VAVACMVFSASYADA-ISCGQVTSGLVPCFGYLAAGGPVPPA--CCNGVRGLNNAAKTTPDRQTACGCLKGILAANTRINLNNANSLPGKCGISIGYKITPNIDCSKI 115          
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLTPD_BRAOT (Non-specific lipid-transfer protein D OS=Brassica oleracea var. italica GN=WAX9D PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 8.121e-22
Identity = 50/116 (43.10%), Postives = 75/116 (64.66%), Query Frame = -2
Query:  123 LKLACAVLLMCMVMGAPI-AQAAVTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 467
            +KLAC ++  CM++  PI + AA++CG V+  +  C+ Y+           CCSG+ SLN+ A TTPDRQ  C CL  AA ++  +N+  A+GLP+ CGVNIPY+IS + +C+ V+
Sbjct:    5 MKLAC-LIFACMIVAGPITSNAALSCGTVSGYVAPCIGYLAQNAPAVPTA-CCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 118          
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.086e-21
Identity = 52/115 (45.22%), Postives = 71/115 (61.74%), Query Frame = -2
Query:  123 LKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 467
            +KLA  V L CM +       A+TC QV+++L  C+ YV           CC+GIK++N  A TTPDRQ+ CNCLK  AGS+  +N   A  LP +CGVN+PY+IS S +C+ V+
Sbjct:    7 IKLALVVAL-CMAVSVA---HAITCSQVSANLAPCINYVRSGGAVPPA--CCNGIKTINGLAKTTPDRQAACNCLKNLAGSVSGVNPGNAESLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUAR (Non-specific lipid-transfer protein 1 OS=Prunus armeniaca PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 4.030e-21
Identity = 47/93 (50.54%), Postives = 65/93 (69.89%), Query Frame = -2
Query:  123 VTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 401
            +TCGQV+SSL  C+ YV           CC+GI+++N+ A TTPDR++ CNCLK  +GSI  +N N A+ LP +CGVNIPY+IS S +C+ V+
Sbjct:    1 ITCGQVSSSLAPCIGYVRGGGAVPPA--CCNGIRNVNNLARTTPDRRTACNCLKQLSGSISGVNPNNAAALPGKCGVNIPYKISASTNCATVK 91          
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: SCA_LILLO (Stigma/stylar cysteine-rich adhesin OS=Lilium longiflorum GN=SCA PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.264e-21
Identity = 47/111 (42.34%), Postives = 68/111 (61.26%), Query Frame = -2
Query:  123 CAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 455
            C +LL+  ++G     +A+TCGQV S L +C+ Y            CC+G+++LN+ A TTPDRQ+ CNCLK+       LN  + +G+P +CGVNIPY I    DC++VR
Sbjct:    8 CFLLLLAFLIGTA---SAITCGQVDSDLTSCLGYARKGGVIPPG--CCAGVRTLNNLAKTTPDRQTACNCLKSLVNPSLGLNAAIVAGIPGKCGVNIPYPIRMQTDCNKVR 113          
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSJ (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. japonica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.264e-21
Identity = 51/116 (43.97%), Postives = 74/116 (63.79%), Query Frame = -2
Query:  126 MALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRV 473
            MAL    AV+   +V  A  A AAV+CG VTSS+  C+ YV           CCSG+++LN  A+++ DR++ C+CLK  A S RNLN+  A+ +P +CGV++ + IS SVDCS++
Sbjct:    8 MALVALVAVVAAAVV--AERASAAVSCGDVTSSIAPCLSYVMGRESSPSSS-CCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSI (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. indica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.264e-21
Identity = 51/116 (43.97%), Postives = 74/116 (63.79%), Query Frame = -2
Query:  126 MALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRV 473
            MAL    AV+   +V  A  A AAV+CG VTSS+  C+ YV           CCSG+++LN  A+++ DR++ C+CLK  A S RNLN+  A+ +P +CGV++ + IS SVDCS++
Sbjct:    8 MALVALVAVVAAAVV--AERASAAVSCGDVTSSIAPCLSYVMGRESSPSSS-CCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
The following BLAST results are available for this feature:
BLAST of CB290909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP_MAIZE7.345e-2344.17Non-specific lipid-transfer protein OS=Zea mays PE... [more]
NLTPA_BRAOT1.253e-2245.30Non-specific lipid-transfer protein A OS=Brassica ... [more]
NLTP3_ARATH3.645e-2245.95Non-specific lipid-transfer protein 3 OS=Arabidops... [more]
NLTP_GERHY8.121e-2243.10Non-specific lipid-transfer protein OS=Gerbera hyb... [more]
NLTPD_BRAOT8.121e-2243.10Non-specific lipid-transfer protein D OS=Brassica ... [more]
NLTP_PYRCO3.086e-2145.22Non-specific lipid-transfer protein OS=Pyrus commu... [more]
NLTP1_PRUAR4.030e-2150.54Non-specific lipid-transfer protein 1 OS=Prunus ar... [more]
SCA_LILLO5.264e-2142.34Stigma/stylar cysteine-rich adhesin OS=Lilium long... [more]
NLTP3_ORYSJ5.264e-2143.97Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTP3_ORYSI5.264e-2143.97Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ac11_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ac11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290909 ID=CB290909; Name=CB290909; organism=Citrus sinensis; type=EST; length=537bp
ATGCATACTACTAATACTCTCTTGACCTAGGAGAGTCCATATCACCCACT
TTATTATTCCATTTTATATTCATATTATATATAATAATACTTCAGCATAT
ATTCTCTTTTCCAAGATCTTCATCTCACTCTGCTGCAGTCAACGGATGGG
CTGATTTGGTAAGGAATGTTGACGCCACACTGGCGTGGGAGGCCAGAAGC
GAGGTTGAGGTTGAGGTTTCTGATGGAGCCAGCAGCGGTTTTCAAGCAGT
TGCAAACGCTCTGGCGGTCGGGTGTGGTGGTGGCTGCGGAGTTAAGACTC
TTAATCCCGCTACAGCAGGGTGGGGGCACAGCGCCTCCACCGGGGCCCGT
CACATATGGCATGCACGCTTGAAGAGAGCTTGTCACTTGGCCACATGTGA
CGGCAGCTTGGGCAATGGGCGCACCCATCACCATGCACATTAGCAGCACA
GCACAAGCAAGCTTAAGAGCCATGTATAATGTTCTTAATTAGCTCTGAGA
AATGAGAATGTTGCTTAACTTGGAACTTTTCCTCGTG
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