CB290909

Overview
NameCB290909
Unique NameCB290909
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length537
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLTPC_ARATH (Non-specific lipid-transfer protein 12 OS=Arabidopsis thaliana GN=LTP12 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.888e-19
Identity = 46/113 (40.71%), Postives = 67/113 (59.29%), Query Frame = -2
Query:  126 KLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRV 464
            K+   ++++ + M +P  ++ + CG VTS+L  C+ Y+T          CC G+KSL   A TTPDR+ VC CLK A   I+ LN +L + LP  CGV+IPY IS S +C  +
Sbjct:    6 KIITCLIVLTIYMASP-TESTIQCGTVTSTLAQCLTYLTNSGPLPSQ--CCVGVKSLYQLAQTTPDRKQVCECLKLAGKEIKGLNTDLVAALPTTCGVSIPYPISFSTNCDSI 115          
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLTP_ELECO (Non-specific lipid-transfer protein OS=Eleusine coracana PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.872e-18
Identity = 45/94 (47.87%), Postives = 62/94 (65.96%), Query Frame = -2
Query:  126 AVTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNC-LKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRV 404
            A++CGQV+S++  C+ Y            C SG++SLN+AA TT DR++ CNC LK+AA  +  LN   AS +P +CGV +PY IS S+DCSRV
Sbjct:    1 AISCGQVSSAIGPCLAYARGAGAAPSAS-CQSGVRSLNAAARTTADRRAACNCSLKSAASRVSGLNAGKASSIPGRCGVRLPYAISASIDCSRV 93          
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLTP7_ARATH (Non-specific lipid-transfer protein 7 OS=Arabidopsis thaliana GN=LTP7 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.872e-18
Identity = 44/115 (38.26%), Postives = 68/115 (59.13%), Query Frame = -2
Query:  132 LKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSI-RNLNLNLASGLPRQCGVNIPY--QISPSVDCS 467
            +KL C V +  +  G   A+AA++CG+V S+L+ C  Y+T          CC+G++ LN    TT DR+  C C+K AA ++   LN + A+G+PR+CG+ IPY  QI  +  C+
Sbjct:    5 MKLGCLVFVFVIAAGPITAKAALSCGEVNSNLKPCTGYLTNGGITSPGPQCCNGVRKLNGMVLTTLDRRQACRCIKNAARNVGPGLNADRAAGIPRRCGIKIPYSTQIRFNTKCN 119          
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLTP1_PHAAU (Non-specific lipid-transfer protein 1 OS=Phaseolus aureus PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.171e-18
Identity = 40/92 (43.48%), Postives = 63/92 (68.48%), Query Frame = -2
Query:  126 VTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRV 401
            +TCGQV  +L  C+ ++           CC+G+K++ +++ TT DR++VC+CLK AAG++R +N N A  LP +CGVNIPY+IS S +C+ +
Sbjct:    1 MTCGQVQGNLAQCIGFLQKGGVVPPS--CCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIPYKISTSTNCNSI 90          
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLTP5_VITSX (Non-specific lipid-transfer protein P5 OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.447e-18
Identity = 41/92 (44.57%), Postives = 60/92 (65.22%), Query Frame = -2
Query:  126 VTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRV 401
            ++CG V + L  C+ Y+           CC+G+K+L ++A TT DR++ C CL  A+ SI  +N  LA+GLP +CGVNIPY+ISPS +C +V
Sbjct:    1 LSCGDVATQLAPCINYLRSAGPLPVA--CCNGVKNLKNSAATTQDRRTACKCLINASKSISGVNFGLAAGLPGKCGVNIPYKISPSTNCDQV 90          
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLTP3_VITSX (Non-specific lipid-transfer protein P3 OS=Vitis sp. PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 7.114e-18
Identity = 39/92 (42.39%), Postives = 63/92 (68.48%), Query Frame = -2
Query:  126 VTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRV 401
            ++CG V + + +C+ Y+           CC+G+K+L ++ATTT DR++ C CL +A+ +I  +N  LA+GLP +CGV+IPY+ISPS +C +V
Sbjct:    1 LSCGDVATQMASCINYLRGAGPLPAA--CCNGVKNLKNSATTTQDRRTACKCLISASKTISGVNFGLAAGLPAKCGVSIPYKISPSTNCDQV 90          
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLTP_AMACA (Non-specific lipid-transfer protein OS=Amaranthus caudatus PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.213e-17
Identity = 40/94 (42.55%), Postives = 59/94 (62.77%), Query Frame = -2
Query:  123 AVTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 404
            AVTC  VT +L  CM Y+           CC+G++SL +AA T  DR+  CNC+K+AA   ++LN  +A+ L  QCGV + Y +SP+V+C+ V+
Sbjct:    1 AVTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLTP1_AMAHP (Non-specific lipid-transfer protein 1 OS=Amaranthus hypochondriacus PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.213e-17
Identity = 40/94 (42.55%), Postives = 59/94 (62.77%), Query Frame = -2
Query:  123 AVTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 404
            AVTC  VT +L  CM Y+           CC+G++SL +AA T  DR+  CNC+K+AA   ++LN  +A+ L  QCGV + Y +SP+V+C+ V+
Sbjct:    1 AVTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLTP5_ARATH (Non-specific lipid-transfer protein 5 OS=Arabidopsis thaliana GN=LTP5 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.022e-17
Identity = 51/117 (43.59%), Postives = 70/117 (59.83%), Query Frame = -2
Query:  123 LKLACAVLLMCMVMGAPIA-QAAVTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSI-RNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 467
            LKL+  V++ CM++ AP+A +AA++CG VT SL  C  Y+T          CCSG++ LNS A TT DRQ  C C++ AA ++   LN   A+ LP  C V I Y IS   +C+ VR
Sbjct:    5 LKLSTLVIV-CMLVTAPMASEAAISCGAVTGSLGQCYNYLTRGGFIPRG--CCSGVQRLNSLARTTRDRQQACRCIQGAARALGSRLNAGRAARLPGACRVRISYPISARTNCNTVR 118          
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLTP6_ARATH (Non-specific lipid-transfer protein 6 OS=Arabidopsis thaliana GN=LTP6 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 7.865e-17
Identity = 42/111 (37.84%), Postives = 65/111 (58.56%), Query Frame = -2
Query:  123 VLLMCMVMGAPIAQAAVTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAG--SIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 449
            +L +C+V+     +AAV+C  V + L  C+ YVT          CC+G+ +L S A T+ DRQ VC C+K+A G  ++    +  A  LP +CGV++PY+ SPS DC  ++
Sbjct:    5 LLAVCLVLALHCGEAAVSCNTVIADLYPCLSYVTQGGPVPTL--CCNGLTTLKSQAQTSVDRQGVCRCIKSAIGGLTLSPRTIQNALELPSKCGVDLPYKFSPSTDCDSIQ 113          
The following BLAST results are available for this feature:
BLAST of CB290909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTPC_ARATH2.888e-1940.71Non-specific lipid-transfer protein 12 OS=Arabidop... [more]
NLTP_ELECO1.872e-1847.87Non-specific lipid-transfer protein OS=Eleusine co... [more]
NLTP7_ARATH1.872e-1838.26Non-specific lipid-transfer protein 7 OS=Arabidops... [more]
NLTP1_PHAAU4.171e-1843.48Non-specific lipid-transfer protein 1 OS=Phaseolus... [more]
NLTP5_VITSX5.447e-1844.57Non-specific lipid-transfer protein P5 OS=Vitis sp... [more]
NLTP3_VITSX7.114e-1842.39Non-specific lipid-transfer protein P3 OS=Vitis sp... [more]
NLTP_AMACA1.213e-1742.55Non-specific lipid-transfer protein OS=Amaranthus ... [more]
NLTP1_AMAHP1.213e-1742.55Non-specific lipid-transfer protein 1 OS=Amaranthu... [more]
NLTP5_ARATH6.022e-1743.59Non-specific lipid-transfer protein 5 OS=Arabidops... [more]
NLTP6_ARATH7.865e-1737.84Non-specific lipid-transfer protein 6 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ac11_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ac11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290909 ID=CB290909; Name=CB290909; organism=Citrus sinensis; type=EST; length=537bp
ATGCATACTACTAATACTCTCTTGACCTAGGAGAGTCCATATCACCCACT
TTATTATTCCATTTTATATTCATATTATATATAATAATACTTCAGCATAT
ATTCTCTTTTCCAAGATCTTCATCTCACTCTGCTGCAGTCAACGGATGGG
CTGATTTGGTAAGGAATGTTGACGCCACACTGGCGTGGGAGGCCAGAAGC
GAGGTTGAGGTTGAGGTTTCTGATGGAGCCAGCAGCGGTTTTCAAGCAGT
TGCAAACGCTCTGGCGGTCGGGTGTGGTGGTGGCTGCGGAGTTAAGACTC
TTAATCCCGCTACAGCAGGGTGGGGGCACAGCGCCTCCACCGGGGCCCGT
CACATATGGCATGCACGCTTGAAGAGAGCTTGTCACTTGGCCACATGTGA
CGGCAGCTTGGGCAATGGGCGCACCCATCACCATGCACATTAGCAGCACA
GCACAAGCAAGCTTAAGAGCCATGTATAATGTTCTTAATTAGCTCTGAGA
AATGAGAATGTTGCTTAACTTGGAACTTTTCCTCGTG
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