CB290909

Overview
NameCB290909
Unique NameCB290909
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length537
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLTPA_ARATH (Non-specific lipid-transfer protein 10 OS=Arabidopsis thaliana GN=LTP10 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.937e-15
Identity = 40/114 (35.09%), Postives = 68/114 (59.65%), Query Frame = -2
Query:  123 VLLMCMVMGAPIA---QAAVTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAG--SIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 449
            VL +C+++ +  A   +AA++C  V ++L  C+ YV           CC+GI+ L+  AT+  D+Q VC C+K+  G  S  ++ L  A+ LP +CGV +PY+I PS +C+ ++
Sbjct:    5 VLPLCLLLASIFAWGSEAAISCNAVQANLYPCVVYVVQGGAIPYS--CCNGIRMLSKQATSASDKQGVCRCIKSVVGRVSYSSIYLKKAAALPGKCGVKLPYKIDPSTNCNSIK 116          
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLTPB_ARATH (Non-specific lipid-transfer protein 11 OS=Arabidopsis thaliana GN=LTP11 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.316e-15
Identity = 40/108 (37.04%), Postives = 60/108 (55.56%), Query Frame = -2
Query:  126 VLLMCMVMGAPIAQAAVTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRV 449
            +L++ +++G      A+ C QV   L  C+PY+           CC+G+ SL +AA    DRQ  CNCLK+ A +I  +N + A  LP +CGVNI    S +VDC+ +
Sbjct:   13 LLVITILLGIAYHGEAIACPQVNMYLAQCLPYLKAGGNPSPM--CCNGLNSLKAAAPEKADRQVACNCLKSVANTIPGINDDFAKQLPAKCGVNIGVPFSKTVDCNSI 118          
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLTP_PINTA (Non-specific lipid-transfer protein OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.640e-14
Identity = 47/111 (42.34%), Postives = 62/111 (55.86%), Query Frame = -2
Query:  126 VLLMCMVMGAPIAQAAVTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGV---NIPYQISPSVDCSRV 449
            V+ M  V GA   + A++C QV S++  C  Y+           CC  I+ L+S    TPDRQ+VCNCLKT A S   + L  A+ LP  C V   N+P  ISP+VDCS+V
Sbjct:   16 VVTMMNVWGAVPVEGAISCNQVVSAMTPCATYLIGNAATPAAT-CCPSIRGLDSQVKATPDRQAVCNCLKTQAKSY-GVKLGKAANLPGLCKVTDLNVP--ISPNVDCSKV 122          
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLTPA_RICCO (Non-specific lipid-transfer protein A OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.797e-14
Identity = 35/92 (38.04%), Postives = 56/92 (60.87%), Query Frame = -2
Query:  126 VTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRV 401
            V CGQV SSL +C+P++T          CC+G+++L + A T+ DR++ C C+K AA     +  + AS LP++CGV+I   IS + +C  +
Sbjct:    1 VDCGQVNSSLASCIPFLTGGVASPSAS-CCAGVQNLKTLAPTSADRRAACECIKAAAARFPTIKQDAASSLPKKCGVDINIPISKTTNCQAI 91          
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLTP8_ARATH (Non-specific lipid-transfer protein 8 OS=Arabidopsis thaliana GN=LTP8 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.388e-13
Identity = 35/96 (36.46%), Postives = 56/96 (58.33%), Query Frame = -2
Query:  126 AQAAVTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRV 413
            +++A++C  V   LQ C+ Y+T          CC G+KSL +A TT+ D+++ C C+K+ A S+  +   LA  L   CG ++P   SP+VDC+ V
Sbjct:   22 SESAISCSVVLQDLQPCVSYLTSGSGNPPET-CCDGVKSLAAATTTSADKKAACQCIKSVANSV-TVKPELAQALASNCGASLPVDASPTVDCTTV 115          
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLTP1_HELAN (Non-specific lipid-transfer protein AP10 OS=Helianthus annuus PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.368e-13
Identity = 38/109 (34.86%), Postives = 62/109 (56.88%), Query Frame = -2
Query:  126 AVLLMCMVMGAPIAQAAVTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRV 452
            A+++M  +M  P    A+TC  VT +L  C+PY+           CC+G K L  A  T  DR++ C C KTAA  ++ +  ++AS LP +CG++    I+P+V+C+ +
Sbjct:   12 AMIVMAQLMVHP--SVAITCNDVTGNLTPCLPYLRSGGKPTPA--CCAGAKKLLGATRTQADRRTACKCAKTAAPQLK-VRPDMASSLPGKCGISTSIPINPNVNCNTI 115          
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLTPB_RICCO (Non-specific lipid-transfer protein B OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.618e-12
Identity = 34/92 (36.96%), Postives = 50/92 (54.35%), Query Frame = -2
Query:  126 VTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRV 401
            V CGQV  +L +C+P++T          CC+G+  L   A T  D++  C C+KTAA    N+  + AS LP +CGV I   IS + +C  +
Sbjct:    1 VNCGQVNKALSSCVPFLTGFDTTPSLT-CCAGVMELKRLAPTVKDKRIACECVKTAAARYPNIREDAASSLPYKCGVVINVPISKTTNCHEI 91          
The following BLAST results are available for this feature:
BLAST of CB290909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTPA_ARATH1.937e-1535.09Non-specific lipid-transfer protein 10 OS=Arabidop... [more]
NLTPB_ARATH4.316e-1537.04Non-specific lipid-transfer protein 11 OS=Arabidop... [more]
NLTP_PINTA1.640e-1442.34Non-specific lipid-transfer protein OS=Pinus taeda... [more]
NLTPA_RICCO2.797e-1438.04Non-specific lipid-transfer protein A OS=Ricinus c... [more]
NLTP8_ARATH1.388e-1336.46Non-specific lipid-transfer protein 8 OS=Arabidops... [more]
NLTP1_HELAN2.368e-1334.86Non-specific lipid-transfer protein AP10 OS=Helian... [more]
NLTPB_RICCO2.618e-1236.96Non-specific lipid-transfer protein B OS=Ricinus c... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_02ac11_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ac11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290909 ID=CB290909; Name=CB290909; organism=Citrus sinensis; type=EST; length=537bp
ATGCATACTACTAATACTCTCTTGACCTAGGAGAGTCCATATCACCCACT
TTATTATTCCATTTTATATTCATATTATATATAATAATACTTCAGCATAT
ATTCTCTTTTCCAAGATCTTCATCTCACTCTGCTGCAGTCAACGGATGGG
CTGATTTGGTAAGGAATGTTGACGCCACACTGGCGTGGGAGGCCAGAAGC
GAGGTTGAGGTTGAGGTTTCTGATGGAGCCAGCAGCGGTTTTCAAGCAGT
TGCAAACGCTCTGGCGGTCGGGTGTGGTGGTGGCTGCGGAGTTAAGACTC
TTAATCCCGCTACAGCAGGGTGGGGGCACAGCGCCTCCACCGGGGCCCGT
CACATATGGCATGCACGCTTGAAGAGAGCTTGTCACTTGGCCACATGTGA
CGGCAGCTTGGGCAATGGGCGCACCCATCACCATGCACATTAGCAGCACA
GCACAAGCAAGCTTAAGAGCCATGTATAATGTTCTTAATTAGCTCTGAGA
AATGAGAATGTTGCTTAACTTGGAACTTTTCCTCGTG
back to top