CB290910

Overview
NameCB290910
Unique NameCB290910
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length633
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290910 vs. ExPASy Swiss-Prot
Match: NLTP2_TOBAC (Non-specific lipid-transfer protein 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.345e-19
Identity = 52/117 (44.44%), Postives = 71/117 (60.68%), Query Frame = 1
Query:   67 MALKLACAVLLMCMVMGAPIAQAADTCGQVTSSLQACMPYXXXXXXXXXXXXXXXXIKSLNSTATTTPDRHSVCNCLKTAAGSIRNLNLNLASGLQRQCGVNIPYQISPSVDCTKVR 417
            M  K+AC V+L CMV+ AP A+A  +CGQV S L  C+PY                +K L   A +  DR + C CLK+AA +I+ +++  A+GL   CGVNIPY+ISPS DC+KV+
Sbjct:    3 MVGKIACFVVL-CMVVVAPHAEAL-SCGQVQSGLAPCLPYLQGRGPLGSCCGG---VKGLLGAAKSLSDRKTACTCLKSAANAIKGIDMGKAAGLPGACGVNIPYKISPSTDCSKVQ 114          
BLAST of CB290910 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.981e-19
Identity = 51/114 (44.74%), Postives = 69/114 (60.53%), Query Frame = 1
Query:   76 KLACAVLLMCMVMGAPIAQAADTCGQVTSSLQACMPYXXXXXXXXXXXXXXXXIKSLNSTATTTPDRHSVCNCLKTAAGSIRNLNLNLASGLQRQCGVNIPYQISPSVDCTKVR 417
            KLA  V L CMV+  PIAQA  TCGQV+S+L  C+ Y                I+++N+ A TT DR + CNCLK  + S+  +N N A+ L  +CGVN+PY+ISPS +C  V+
Sbjct:    8 KLALVVAL-CMVVSVPIAQAL-TCGQVSSNLAPCIAYVRGGGAVPPACCNG--IRNINNLAKTTADRQTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTNCATVK 117          
BLAST of CB290910 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.981e-19
Identity = 46/92 (50.00%), Postives = 60/92 (65.22%), Query Frame = 1
Query:  142 TCGQVTSSLQACMPYXXXXXXXXXXXXXXXXIKSLNSTATTTPDRHSVCNCLKTAAGSIRNLNLNLASGLQRQCGVNIPYQISPSVDCTKVR 417
            TCGQV+SSL  C+ Y                ++SLN+ A TT DR + CNCLK+A  SI+ LNLNLA+GL  +CGV++PY+ISPS DC  V+
Sbjct:    2 TCGQVSSSLAPCINYLRAGGVVPANCCNG--VRSLNNAAKTTADRQAACNCLKSAFNSIKGLNLNLAAGLPGKCGVSVPYKISPSTDCKSVK 91          
BLAST of CB290910 vs. ExPASy Swiss-Prot
Match: NLTP_BETVU (Non-specific lipid-transfer protein OS=Beta vulgaris GN=IWF1' PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.118e-19
Identity = 50/114 (43.86%), Postives = 68/114 (59.65%), Query Frame = 1
Query:   73 LKLACAVLLMCMVMGAPIAQAADTCGQVTSSLQACMPYXXXXXXXXXXXXXXXXIKSLNSTATTTPDRHSVCNCLKTAAGSIRNLNLNLASGLQRQCGVNIPYQISPSVDCTKV 414
            +K  CA L+MCM++ AP+A+A  TCG V S L  C+ Y                IKSLNS A +  DR + C CLK+AA SI+ +N   A+ L RQCGV++PY ISP+ +C  +
Sbjct:    7 VKFTCA-LVMCMMVAAPLAEAI-TCGLVASKLAPCIGYLQGAPGPSAACCGG--IKSLNSAAASPADRKTACTCLKSAATSIKGINYGKAASLPRQCGVSVPYAISPNTNCNAI 116          
BLAST of CB290910 vs. ExPASy Swiss-Prot
Match: NLTP1_ARATH (Non-specific lipid-transfer protein 1 OS=Arabidopsis thaliana GN=LTP1 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.031e-18
Identity = 52/117 (44.44%), Postives = 72/117 (61.54%), Query Frame = 1
Query:   73 LKLACAVLLMCMVMGAPI-AQAADTCGQVTSSLQACMPYXXXXXXXXXXXXXXXXIKSLNSTATTTPDRHSVCNCLKTAAGSIRN-LNLNLASGLQRQCGVNIPYQISPSVDCTKVR 417
            +KLAC +LL CM++  PI + AA +CG V S+L AC+ Y                +K+LNS A TTPDR   CNC++ AA ++ + LN   A+G+ + CGVNIPY+IS S +C  VR
Sbjct:    5 MKLAC-LLLACMIVAGPITSNAALSCGSVNSNLAACIGYVLQGGVIPPACCSG--VKNLNSIAKTTPDRQQACNCIQGAARALGSGLNAGRAAGIPKACGVNIPYKISTSTNCKTVR 118          
BLAST of CB290910 vs. ExPASy Swiss-Prot
Match: NLT2B_ORYSJ (Non-specific lipid-transfer protein 2B OS=Oryza sativa subsp. japonica GN=LTP2-B PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.465e-18
Identity = 46/109 (42.20%), Postives = 63/109 (57.80%), Query Frame = 1
Query:   88 AVLLMCMVMGAPIAQAADTCGQVTSSLQACMPYXXXXXXXXXXXXXXXXIKSLNSTATTTPDRHSVCNCLKTAAGSIRNLNLNLASGLQRQCGVNIPYQISPSVDCTKV 414
            A++   ++ G     AA +CGQV S++  C+ Y                ++SLNS ATTT DR + CNCLK  AGSI  LN   A+ +  +CGV+IPY ISPS+DC+ V
Sbjct:   10 ALVAALLLAGPHTTMAAISCGQVNSAVSPCLSYARGGSGPSAACCSG--VRSLNSAATTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 116          
BLAST of CB290910 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLLC (Non-specific lipid-transfer protein 2 OS=Solanum lycopersicum GN=LE16 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.525e-18
Identity = 50/114 (43.86%), Postives = 68/114 (59.65%), Query Frame = 1
Query:   76 KLACAVLLMCMVMGAPIAQAADTCGQVTSSLQACMPYXXXXXXXXXXXXXXXXIKSLNSTATTTPDRHSVCNCLKTAAGSIRNLNLNLASGLQRQCGVNIPYQISPSVDCTKVR 417
            K+AC V+  CMV+ AP A++  +CG+VTS L  C+PY                +K L   A T  DR + C CLK+AA SI+ ++   A+GL   CGVNIPY+ISPS DC+ V+
Sbjct:    6 KIACFVVF-CMVVVAPHAESL-SCGEVTSGLAPCLPYLEGRGPLGGCCGG---VKGLLGAAKTPEDRKTACTCLKSAANSIKGIDTGKAAGLPGVCGVNIPYKISPSTDCSTVQ 114          
BLAST of CB290910 vs. ExPASy Swiss-Prot
Match: NLTP2_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP2-A PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.910e-18
Identity = 47/114 (41.23%), Postives = 63/114 (55.26%), Query Frame = 1
Query:   73 LKLACAVLLMCMVMGAPIAQAADTCGQVTSSLQACMPYXXXXXXXXXXXXXXXXIKSLNSTATTTPDRHSVCNCLKTAAGSIRNLNLNLASGLQRQCGVNIPYQISPSVDCTKV 414
            L L   V    ++ G     AA +CGQV S++  C+ Y                ++SLNS A+TT DR + CNCLK  AGSI  LN   A+ +  +CGV+IPY ISPS+DC+ V
Sbjct:    6 LVLVALVAAALLLAGPHTTMAAISCGQVNSAVSPCLSYARGGSGPSAACCSG--VRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
BLAST of CB290910 vs. ExPASy Swiss-Prot
Match: NLT2A_ORYSJ (Non-specific lipid-transfer protein 2A OS=Oryza sativa subsp. japonica GN=LTP2-A PE=3 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 5.910e-18
Identity = 47/114 (41.23%), Postives = 63/114 (55.26%), Query Frame = 1
Query:   73 LKLACAVLLMCMVMGAPIAQAADTCGQVTSSLQACMPYXXXXXXXXXXXXXXXXIKSLNSTATTTPDRHSVCNCLKTAAGSIRNLNLNLASGLQRQCGVNIPYQISPSVDCTKV 414
            L L   V    ++ G     AA +CGQV S++  C+ Y                ++SLNS A+TT DR + CNCLK  AGSI  LN   A+ +  +CGV+IPY ISPS+DC+ V
Sbjct:    6 LVLVALVAAALLLAGPHTTMAAISCGQVNSAVSPCLSYARGGSGPSAACCSG--VRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
BLAST of CB290910 vs. ExPASy Swiss-Prot
Match: NLTP1_LENCU (Non-specific lipid-transfer protein 1 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.719e-18
Identity = 48/117 (41.03%), Postives = 68/117 (58.12%), Query Frame = 1
Query:   70 ALKLACAVLLMCMVM-GAPIAQAADTCGQVTSSLQACMPYXXXXXXXXXXXXXXXXIKSLNSTATTTPDRHSVCNCLKTAAGSIRNLNLNLASGLQRQCGVNIPYQISPSVDCTKVR 417
            +L+++C V LMCMV+  AP+A+AA +CG V+ +L  C+ Y                +K LN  A TT DR + CNCLK++AGSI  L     + L  +CGV +PY IS S +C  +R
Sbjct:    3 SLRVSCLVALMCMVVISAPMAEAAISCGTVSGALVPCLTYLKGGPGPSPQCCGG--VKRLNGAARTTIDRRAACNCLKSSAGSISGLKPGNVATLPGKCGVRLPYTISTSTNCNTIR 117          
The following BLAST results are available for this feature:
BLAST of CB290910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
NLTP2_TOBAC5.345e-1944.44Non-specific lipid-transfer protein 2 OS=Nicotiana... [more]
NLTP_PRUAV6.981e-1944.74Non-specific lipid-transfer protein OS=Prunus aviu... [more]
LTP1_MORNI6.981e-1950.00Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP_BETVU9.118e-1943.86Non-specific lipid-transfer protein OS=Beta vulgar... [more]
NLTP1_ARATH2.031e-1844.44Non-specific lipid-transfer protein 1 OS=Arabidops... [more]
NLT2B_ORYSJ3.465e-1842.20Non-specific lipid-transfer protein 2B OS=Oryza sa... [more]
NLTP2_SOLLC4.525e-1843.86Non-specific lipid-transfer protein 2 OS=Solanum l... [more]
NLTP2_ORYSI5.910e-1841.23Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLT2A_ORYSJ5.910e-1841.23Non-specific lipid-transfer protein 2A OS=Oryza sa... [more]
NLTP1_LENCU7.719e-1841.03Non-specific lipid-transfer protein 1 OS=Lens culi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ac11_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ac11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290910 ID=CB290910; Name=CB290910; organism=Citrus sinensis; type=EST; length=633bp
AGCACAATGAAAAGTTCCAAGTTAAGCAACATTCTCATTTCTCAAAGCTA
ATTAAGAACATTATACATGGCTCTTAAGCTTGCTTGTGCTGTGCTGCTAA
TGTGCATGGTGATGGGTGCGCCCATTGCCCAAGCTGCCGACACATGTGGC
CAAGTGACAAGCTCTCTTCAAGCGTGCATGCCATATGTGACGGGCCCCGG
TGGAGGCACTGTGCCGCCAACCTGCTGTACCGGGATTAAGAGTCTTAACT
CCACAGCCACCACCACACCCGACCGCCATAGCGTTTGCAACTGCTTGAAA
ACCGCTGCTGGCTCCATCAGAAACCTCAACCTCAACCTCGCTTCTGGCCT
CCAACGCCAGTGTGGCGTCAACATTCCTTACCAAATCAGCCCATCCGTTG
ACTGCACCAAAGTGAGATGAACATCTTGGAAAAGATAATATATGCTGAAG
TATTATTATATATAATATGAATATAAAATGGAATAATAAAGTGGGTGATA
TGGACTCTCCTAGGTCAAGAGAGAATTAGTACTATGCATCTATCATATAT
GTACCAAAGTGTCATCCACCGAGTCCCTTGCCACGATTCTCATATATAAT
ATACTACTTTGTTATTTAAAAAAAAAAAAAAAA
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