CB290993

Overview
NameCB290993
Unique NameCB290993
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_THET8 (30S ribosomal protein S5 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=rpsE PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 8.832e-11
Identity = 39/113 (34.51%), Postives = 62/113 (54.87%), Query Frame = 1
Query:  367 GQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI--PVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGS 699
            G+R RF A VVVGD  G VGLG   + EV  A++ A   A+ +++  P++ G          T+P ++  + G+  + + PA  G G++A  VP+ +L  AG+ D+ T   GS
Sbjct:   23 GRRFRFGALVVVGDRQGRVGLGFGKAPEVPLAVQKAGYYARRNMVEVPLQNG----------TIPHEIEVEFGASKIVLKPAAPGTGVIAGAVPRAILELAGVTDILTKELGS 125          
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_THET2 (30S ribosomal protein S5 OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=rpsE PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.832e-11
Identity = 39/113 (34.51%), Postives = 62/113 (54.87%), Query Frame = 1
Query:  367 GQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI--PVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGS 699
            G+R RF A VVVGD  G VGLG   + EV  A++ A   A+ +++  P++ G          T+P ++  + G+  + + PA  G G++A  VP+ +L  AG+ D+ T   GS
Sbjct:   23 GRRFRFGALVVVGDRQGRVGLGFGKAPEVPLAVQKAGYYARRNMVEVPLQNG----------TIPHEIEVEFGASKIVLKPAAPGTGVIAGAVPRAILELAGVTDILTKELGS 125          
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_THESQ (30S ribosomal protein S5 OS=Thermotoga sp. (strain RQ2) GN=rpsE PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.832e-11
Identity = 42/117 (35.90%), Postives = 63/117 (53.85%), Query Frame = 1
Query:  367 GQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI--PVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGSTRTL 711
            G+   F+   +VG+ +G VGLG+  ++EV  AIR AI  AK ++I  PV  G          T+P ++ G+  +  V + PA  G GI+A    + V+  AGI ++ T S GST  L
Sbjct:   32 GKNLSFRVVAIVGNKNGKVGLGIGKAREVPEAIRKAISAAKRNIIEVPVING----------TIPHEIIGRQDASKVLLRPAAPGTGIIAGGTVRAVVELAGIQNILTKSLGSTNPL 138          
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_THEP1 (30S ribosomal protein S5 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rpsE PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.832e-11
Identity = 42/117 (35.90%), Postives = 63/117 (53.85%), Query Frame = 1
Query:  367 GQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI--PVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGSTRTL 711
            G+   F+   +VG+ +G VGLG+  ++EV  AIR AI  AK ++I  PV  G          T+P ++ G+  +  V + PA  G GI+A    + V+  AGI ++ T S GST  L
Sbjct:   32 GKNLSFRVVAIVGNKNGKVGLGIGKAREVPEAIRKAISAAKRNIIEVPVING----------TIPHEIIGRQDASKVLLRPAAPGTGIIAGGTVRAVVELAGIQNILTKSLGSTNPL 138          
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_LEPIN (30S ribosomal protein S5 OS=Leptospira interrogans GN=rpsE PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.832e-11
Identity = 42/112 (37.50%), Postives = 60/112 (53.57%), Query Frame = 1
Query:  367 GQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGST 702
            G+R  F A  VVGD  G VG+G   + EV  AIR +I  AK  ++ +          + HT+P +V GK  S  V + P+  G GI+A    ++++  AGI DV T S GS+
Sbjct:   47 GRRFSFNALSVVGDQRGKVGIGFGKANEVPDAIRKSIESAKKHLVKINF--------KGHTIPHEVIGKFKSARVILKPSTAGTGIIAGASVRSIVEKAGIQDVLTKSWGSS 150          
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_LEPIC (30S ribosomal protein S5 OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=rpsE PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.832e-11
Identity = 42/112 (37.50%), Postives = 60/112 (53.57%), Query Frame = 1
Query:  367 GQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGST 702
            G+R  F A  VVGD  G VG+G   + EV  AIR +I  AK  ++ +          + HT+P +V GK  S  V + P+  G GI+A    ++++  AGI DV T S GS+
Sbjct:   47 GRRFSFNALSVVGDQRGKVGIGFGKANEVPDAIRKSIESAKKHLVKINF--------KGHTIPHEVIGKFKSARVILKPSTAGTGIIAGASVRSIVEKAGIQDVLTKSWGSS 150          
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_LACS1 (30S ribosomal protein S5 OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=rpsE PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.832e-11
Identity = 43/111 (38.74%), Postives = 62/111 (55.86%), Query Frame = 1
Query:  367 GQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGS 699
            G+R RF A VVVGD +GHVG G   ++EV  AIR A+  A+ ++I V        +G   T+P +V G+     + + PA  G+G+ A    + V+  AGI DV + S GS
Sbjct:   28 GRRLRFAALVVVGDHNGHVGFGTGKAQEVPEAIRKAVDAARKNLIEV------PTVGT--TLPHEVIGQYSGSRIMLKPAIAGSGVAAGGAVRAVMELAGIADVTSKSLGS 130          
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_LACPL (30S ribosomal protein S5 OS=Lactobacillus plantarum GN=rpsE PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.832e-11
Identity = 42/111 (37.84%), Postives = 59/111 (53.15%), Query Frame = 1
Query:  367 GQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGS 699
            G+R RF A V+VGD  GHVG G   ++EV  AIR A   AK ++I V        +G   T+P +  G  G   + + PA  G+G+ A    + V+  AG+DDV +   GS
Sbjct:   28 GRRLRFAALVIVGDHKGHVGFGTGKAQEVPEAIRKASEAAKKNLITV------PMVGT--TIPHEALGVYGGGRIMLKPAVEGSGVAAGGAVRAVMELAGVDDVTSKRLGS 130          
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_GEOLS (30S ribosomal protein S5 OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=rpsE PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.832e-11
Identity = 37/111 (33.33%), Postives = 59/111 (53.15%), Query Frame = 1
Query:  367 GQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGS 699
            G+R  F A VVVGD  GHVG G+  + EV  AIR  +  AK ++I V        + +  ++P ++ G+ G+  + M PA  G G++A    + +   AGI ++ +   GS
Sbjct:   28 GRRFSFSALVVVGDASGHVGYGLGKANEVPEAIRKGVEQAKKNLIKV-------PVNQNQSIPYEIIGRFGAGRILMKPASPGTGVIAGGAARAIFEAAGISNILSKCLGS 131          
The following BLAST results are available for this feature:
BLAST of CB290993 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 179
Match NameE-valueIdentityDescription
RS5_THET88.832e-1134.5130S ribosomal protein S5 OS=Thermus thermophilus (... [more]
RS5_THET28.832e-1134.5130S ribosomal protein S5 OS=Thermus thermophilus (... [more]
RS5_THESQ8.832e-1135.9030S ribosomal protein S5 OS=Thermotoga sp. (strain... [more]
RS5_THEP18.832e-1135.9030S ribosomal protein S5 OS=Thermotoga petrophila ... [more]
RS5_LEPIN8.832e-1137.5030S ribosomal protein S5 OS=Leptospira interrogans... [more]
RS5_LEPIC8.832e-1137.5030S ribosomal protein S5 OS=Leptospira interrogans... [more]
RS5_LACS18.832e-1138.7430S ribosomal protein S5 OS=Lactobacillus salivari... [more]
RS5_LACPL8.832e-1137.8430S ribosomal protein S5 OS=Lactobacillus plantaru... [more]
RS5_GEOLS8.832e-1133.3330S ribosomal protein S5 OS=Geobacter lovleyi (str... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_02ag10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ag10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290993 ID=CB290993; Name=CB290993; organism=Citrus sinensis; type=EST; length=721bp
GCTCGCATTTTTCACTCTCCCAAAGCCCAAACCCTAGCTTCAAACCCTAA
ACCCACAAGAACAAAACCATGGCTGAACGAGGTGGCGAGCGCGGTGCATT
CGGACGCGGCTTCGGCCGTGGTGGGCGGGGCGACCGTGGAGGCCCACGTG
GCCGTCGCCGCGCTGGACGCACAGAGGAAGAAGATAAGTGGGTCCCAGTC
ACGAAACTCGGCCGTCTGGTGAGAGAAGGCAAGATCAGGAGCCTCGAGCA
AATCTACCTCCACTCGCTCCCAATCAAGGAGTATCAAATCATCGACACGC
TTATCGGCCACAAATTGAAGGACGAGGTCATGAAGATCATGCCGGTGCAC
AAACAGACACGGTGCCGGTCAGAGGACGAGGTTCAAGGCCTTCGTCGTCG
TCGGTGACACGGACGGCCACGTGGGTCTTGGCGTTAAGTGCTCCAAAGAG
GTTGCCACTGCCATCCGTGGCGCTATCATATTGGCGAAGCTGTCGGTGAT
TCCTGTGAGAAGGGGTTACTGGGGTAACAAAATCGGGAGGCCACACACCG
TGCCGTGTAAGGTGACCGGTAAGTGTGGCAGTGTCACCGTGAGGATGGTT
CCGGCCCCACATGGTGCCGGAATTGTGGCGGCTAGGGTTCCAAAGAACGT
GCTGCACTTTGCTGGTATTGACGATGTTTTCACATCTTCTCGTGGGTCGA
CCAGGACTCTTGGAAACTTTG
back to top