CB290993
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_THET8 (30S ribosomal protein S5 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=rpsE PE=1 SV=3) HSP 1 Score: 67.3958 bits (163), Expect = 8.832e-11 Identity = 39/113 (34.51%), Postives = 62/113 (54.87%), Query Frame = 1 Query: 367 GQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI--PVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGS 699 G+R RF A VVVGD G VGLG + EV A++ A A+ +++ P++ G T+P ++ + G+ + + PA G G++A VP+ +L AG+ D+ T GS Sbjct: 23 GRRFRFGALVVVGDRQGRVGLGFGKAPEVPLAVQKAGYYARRNMVEVPLQNG----------TIPHEIEVEFGASKIVLKPAAPGTGVIAGAVPRAILELAGVTDILTKELGS 125
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_THET2 (30S ribosomal protein S5 OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=rpsE PE=1 SV=2) HSP 1 Score: 67.3958 bits (163), Expect = 8.832e-11 Identity = 39/113 (34.51%), Postives = 62/113 (54.87%), Query Frame = 1 Query: 367 GQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI--PVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGS 699 G+R RF A VVVGD G VGLG + EV A++ A A+ +++ P++ G T+P ++ + G+ + + PA G G++A VP+ +L AG+ D+ T GS Sbjct: 23 GRRFRFGALVVVGDRQGRVGLGFGKAPEVPLAVQKAGYYARRNMVEVPLQNG----------TIPHEIEVEFGASKIVLKPAAPGTGVIAGAVPRAILELAGVTDILTKELGS 125
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_THESQ (30S ribosomal protein S5 OS=Thermotoga sp. (strain RQ2) GN=rpsE PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.832e-11 Identity = 42/117 (35.90%), Postives = 63/117 (53.85%), Query Frame = 1 Query: 367 GQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI--PVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGSTRTL 711 G+ F+ +VG+ +G VGLG+ ++EV AIR AI AK ++I PV G T+P ++ G+ + V + PA G GI+A + V+ AGI ++ T S GST L Sbjct: 32 GKNLSFRVVAIVGNKNGKVGLGIGKAREVPEAIRKAISAAKRNIIEVPVING----------TIPHEIIGRQDASKVLLRPAAPGTGIIAGGTVRAVVELAGIQNILTKSLGSTNPL 138
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_THEP1 (30S ribosomal protein S5 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rpsE PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.832e-11 Identity = 42/117 (35.90%), Postives = 63/117 (53.85%), Query Frame = 1 Query: 367 GQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI--PVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGSTRTL 711 G+ F+ +VG+ +G VGLG+ ++EV AIR AI AK ++I PV G T+P ++ G+ + V + PA G GI+A + V+ AGI ++ T S GST L Sbjct: 32 GKNLSFRVVAIVGNKNGKVGLGIGKAREVPEAIRKAISAAKRNIIEVPVING----------TIPHEIIGRQDASKVLLRPAAPGTGIIAGGTVRAVVELAGIQNILTKSLGSTNPL 138
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_LEPIN (30S ribosomal protein S5 OS=Leptospira interrogans GN=rpsE PE=3 SV=2) HSP 1 Score: 67.3958 bits (163), Expect = 8.832e-11 Identity = 42/112 (37.50%), Postives = 60/112 (53.57%), Query Frame = 1 Query: 367 GQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGST 702 G+R F A VVGD G VG+G + EV AIR +I AK ++ + + HT+P +V GK S V + P+ G GI+A ++++ AGI DV T S GS+ Sbjct: 47 GRRFSFNALSVVGDQRGKVGIGFGKANEVPDAIRKSIESAKKHLVKINF--------KGHTIPHEVIGKFKSARVILKPSTAGTGIIAGASVRSIVEKAGIQDVLTKSWGSS 150
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_LEPIC (30S ribosomal protein S5 OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=rpsE PE=3 SV=2) HSP 1 Score: 67.3958 bits (163), Expect = 8.832e-11 Identity = 42/112 (37.50%), Postives = 60/112 (53.57%), Query Frame = 1 Query: 367 GQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGST 702 G+R F A VVGD G VG+G + EV AIR +I AK ++ + + HT+P +V GK S V + P+ G GI+A ++++ AGI DV T S GS+ Sbjct: 47 GRRFSFNALSVVGDQRGKVGIGFGKANEVPDAIRKSIESAKKHLVKINF--------KGHTIPHEVIGKFKSARVILKPSTAGTGIIAGASVRSIVEKAGIQDVLTKSWGSS 150
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_LACS1 (30S ribosomal protein S5 OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=rpsE PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.832e-11 Identity = 43/111 (38.74%), Postives = 62/111 (55.86%), Query Frame = 1 Query: 367 GQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGS 699 G+R RF A VVVGD +GHVG G ++EV AIR A+ A+ ++I V +G T+P +V G+ + + PA G+G+ A + V+ AGI DV + S GS Sbjct: 28 GRRLRFAALVVVGDHNGHVGFGTGKAQEVPEAIRKAVDAARKNLIEV------PTVGT--TLPHEVIGQYSGSRIMLKPAIAGSGVAAGGAVRAVMELAGIADVTSKSLGS 130
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_LACPL (30S ribosomal protein S5 OS=Lactobacillus plantarum GN=rpsE PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.832e-11 Identity = 42/111 (37.84%), Postives = 59/111 (53.15%), Query Frame = 1 Query: 367 GQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGS 699 G+R RF A V+VGD GHVG G ++EV AIR A AK ++I V +G T+P + G G + + PA G+G+ A + V+ AG+DDV + GS Sbjct: 28 GRRLRFAALVIVGDHKGHVGFGTGKAQEVPEAIRKASEAAKKNLITV------PMVGT--TIPHEALGVYGGGRIMLKPAVEGSGVAAGGAVRAVMELAGVDDVTSKRLGS 130
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_GEOLS (30S ribosomal protein S5 OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=rpsE PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.832e-11 Identity = 37/111 (33.33%), Postives = 59/111 (53.15%), Query Frame = 1 Query: 367 GQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGS 699 G+R F A VVVGD GHVG G+ + EV AIR + AK ++I V + + ++P ++ G+ G+ + M PA G G++A + + AGI ++ + GS Sbjct: 28 GRRFSFSALVVVGDASGHVGYGLGKANEVPEAIRKGVEQAKKNLIKV-------PVNQNQSIPYEIIGRFGAGRILMKPASPGTGVIAGGAARAIFEAAGISNILSKCLGS 131 The following BLAST results are available for this feature:
BLAST of CB290993 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 179
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Sequences
The
following sequences are available for this feature:
EST sequence >CB290993 ID=CB290993; Name=CB290993; organism=Citrus sinensis; type=EST; length=721bpback to top |