CB290993
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_METHJ (30S ribosomal protein S5P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps5p PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 2.107e-31 Identity = 53/121 (43.80%), Postives = 76/121 (62.81%), Query Frame = 1 Query: 364 AGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGSTRTLGNF 720 +G+R +F+A VVVG+ DG++G G +V AI+ AI+ AK++++ VRRG W PH++P VTG GSV V + PAP G G+V + K VL AGI DV+ ++G TRT N+ Sbjct: 65 SGRRVKFRAVVVVGNRDGYIGFGQGKDAQVGDAIKKAIVSAKINLVKVRRGCGSWECGCSNPHSIPMLVTGDAGSVRVTLRPAPQGIGLVTGDIGKKVLELAGIRDVWAQTQGQTRTTINY 185 HSP 2 Score: 51.2174 bits (121), Expect = 2.107e-31 Identity = 25/61 (40.98%), Postives = 41/61 (67.21%), Query Frame = 3 Query: 177 EEDKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVHKQT 359 ++ +WVP+T LGR+V+ G+I+S+++I PIKE +I+D + L DEV+ I V + T Sbjct: 4 DKSEWVPLTGLGRMVQAGEIKSIDEILSSGKPIKEPEIVDAFL-PDLVDEVLDINMVQRMT 63
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_METMJ (30S ribosomal protein S5P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps5p PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 2.107e-31 Identity = 55/121 (45.45%), Postives = 76/121 (62.81%), Query Frame = 1 Query: 364 AGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGSTRTLGNF 720 +G+R +F+ VVVG+ +G+VG G +V AI+ AI+ AKL++I V RG W H++P +VTGK GSV V + PAP G G+V +PK VL AGI DV+ +RG TRT N+ Sbjct: 65 SGRRVKFRTVVVVGNRNGYVGFGQGKDVQVGNAIQKAIVNAKLNLIKVSRGCGSWECGCETAHSIPIEVTGKAGSVKVTLKPAPQGIGLVTGDIPKKVLMLAGIKDVWAFNRGQTRTTINY 185 HSP 2 Score: 52.7582 bits (125), Expect = 2.107e-31 Identity = 25/60 (41.67%), Postives = 41/60 (68.33%), Query Frame = 3 Query: 180 EDKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVHKQT 359 +++W+P+T LGR+V G+I S++++ PIKE QI+D L+ L+DEV+ I V + T Sbjct: 5 QEEWIPLTGLGRMVAAGEITSIDEVLASGRPIKEPQIVDLLL-PDLEDEVLDINMVQRMT 63
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_UNCMA (30S ribosomal protein S5P OS=Uncultured methanogenic archaeon RC-I GN=rps5p PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.741e-31 Identity = 54/121 (44.63%), Postives = 73/121 (60.33%), Query Frame = 1 Query: 364 AGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGSTRTLGNF 720 +G+R +F+ VVVG+ +G+VGL +V AIR AI AKL++I V RG W G HTVP +V G+ GS+ V ++PAP G G+ A K VL AG DV++ + G TRT NF Sbjct: 69 SGRRVKFRTTVVVGNGNGYVGLAQGKGVQVGPAIRKAIENAKLNIIKVARGCGSWECGCGLTHTVPSQVEGRAGSLKVVLMPAPRGLGLAAGGPAKKVLEMAGYKDVWSRTEGETRTTINF 189 HSP 2 Score: 60.077 bits (144), Expect = 2.741e-31 Identity = 29/61 (47.54%), Postives = 42/61 (68.85%), Query Frame = 3 Query: 177 EEDKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVHKQT 359 E+ W+P T+LG++V EGKI ++E+ + LPIKEYQI+D L+ L DEV+ I V + T Sbjct: 8 EQAAWIPKTRLGKMVAEGKITTMEEAFETGLPIKEYQIVDALL-PDLVDEVLDISMVQRMT 67
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_METM5 (30S ribosomal protein S5P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps5p PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 6.045e-31 Identity = 61/123 (49.59%), Postives = 79/123 (64.23%), Query Frame = 1 Query: 358 HGAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGSTRTLGNF 720 H +G+R R++A V VG+ +G+VG+G+ SKEV AIR AI AKLS+I VR G W G PH++P G CGSV V ++PAP G G+VA V K VL AG+ D +T + G TRT NF Sbjct: 75 HKSGRRARYRATVAVGNKNGYVGVGMGKSKEVGPAIRKAIAHAKLSLIKVRVGCGSWECGCGSPHSIPFAAKGACGSVKVELLPAPRGVGLVAGNVAKAVLGLAGVKDAWTKTFGDTRTTFNF 197 HSP 2 Score: 40.0466 bits (92), Expect = 6.045e-31 Identity = 19/57 (33.33%), Postives = 35/57 (61.40%), Query Frame = 3 Query: 183 DKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVHK 353 + W P T++GR+V+EG I + I LP+ E +I+D L+ L+++V+ + V + Sbjct: 18 EAWEPKTQIGRMVKEGTISDISYIMDKGLPLLEPEIVDALL-PDLEEQVLDVKLVQR 73
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_META3 (30S ribosomal protein S5P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps5p PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 7.876e-31 Identity = 62/123 (50.41%), Postives = 78/123 (63.41%), Query Frame = 1 Query: 358 HGAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGSTRTLGNF 720 H +G+R RF+A VVG+ +G VG+G+ SKEV AIR AI AKLS+I VR G W G H++P G CGSV V ++PAP G G+VA V K VL AGI D++T + G TRT NF Sbjct: 68 HKSGRRARFRATAVVGNRNGFVGVGMGKSKEVGPAIRKAIAHAKLSLIKVRTGCGSWECGCGTAHSIPFAAKGSCGSVKVELLPAPRGVGLVAGNVAKAVLGLAGIKDIWTKTFGDTRTTYNF 190 HSP 2 Score: 40.0466 bits (92), Expect = 7.876e-31 Identity = 19/57 (33.33%), Postives = 36/57 (63.16%), Query Frame = 3 Query: 183 DKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVHK 353 D W P T++G+ V+EG I ++ I + LP+ E +I+D L+ L+++V+ + V + Sbjct: 11 DAWEPKTQVGKKVKEGTITDIDYIIDNGLPLLEPEIVDALL-PDLEEQVLDVSLVQR 66
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_PYRKO (30S ribosomal protein S5P OS=Pyrococcus kodakaraensis GN=rps5p PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 1.024e-30 Identity = 54/121 (44.63%), Postives = 78/121 (64.46%), Query Frame = 1 Query: 364 AGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGSTRTLGNF 720 +G+R RF+ VG+ DG+VGLG+ +EV AIR AI AK+++I ++RG W + RPH++P V GK GSV V+++P P G G+V V K +L AG+ DV++ + G TRT NF Sbjct: 76 SGRRIRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKMNIIEIKRGCGSWECRCRRPHSIPFAVEGKEGSVRVKLMPGPRGLGLVIGDVGKKILTLAGVQDVWSQTLGETRTTVNF 196 HSP 2 Score: 45.0542 bits (105), Expect = 1.024e-30 Identity = 19/41 (46.34%), Postives = 29/41 (70.73%), Query Frame = 3 Query: 183 DKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLI 305 ++W P TKLGRLV+EG+I + +I+ IKE +I+D L+ Sbjct: 13 EEWEPKTKLGRLVKEGQITDIHEIFRKGYQIKEPEIVDVLL 53
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_SULAC (30S ribosomal protein S5P OS=Sulfolobus acidocaldarius GN=rps5p PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.337e-30 Identity = 52/121 (42.98%), Postives = 77/121 (63.64%), Query Frame = 1 Query: 364 AGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGSTRTLGNF 720 AG+ +R+K +V+G+ DG++ G +K++ AI+ AI AK+ +IPVRRG W G H++P V+GK GSV V ++PAP G G+V V K L AG+ DV++ ++GST T NF Sbjct: 70 AGELSRYKVLIVMGNMDGYISYGTGKAKQLRVAIQKAIRDAKMRIIPVRRGCGSWECTCGESHSLPFIVSGKAGSVEVTLLPAPKGTGLVVGSVLKTFLSLAGLKDVWSRTKGSTYTHENF 190 HSP 2 Score: 52.7582 bits (125), Expect = 1.337e-30 Identity = 25/59 (42.37%), Postives = 43/59 (72.88%), Query Frame = 3 Query: 183 DKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVHKQT 359 + W P TK+G+L++EGKI S+++++ +LPI E +I+D L+ KL+ +++ I V KQT Sbjct: 11 EDWKPRTKVGQLIKEGKINSMKELFERNLPIVEPEIVDVLL-PKLRYDIVDIGIVQKQT 68
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_METST (30S ribosomal protein S5P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps5p PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.738e-30 Identity = 56/123 (45.53%), Postives = 76/123 (61.79%), Query Frame = 1 Query: 358 HGAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGSTRTLGNF 720 H +G++ F+ V VG+ +G+VGLG S+EV AIR A+ AK ++I VRRG WG GR HTVP K+ GK SV+ ++PAP G G+ V K +L AGI DV++ G T+T NF Sbjct: 77 HKSGRKVNFRVIVAVGNRNGYVGLGQGKSQEVGPAIRKAVDAAKYNLIKVRRGCGDWGCGCGRRHTVPFKIEGKMSSVSATLIPAPAGVGLAIGNVGKTILSLAGIADVWSMCSGQTQTTINF 199 HSP 2 Score: 46.2098 bits (108), Expect = 1.738e-30 Identity = 23/57 (40.35%), Postives = 37/57 (64.91%), Query Frame = 3 Query: 183 DKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVHK 353 + W P T+LGR V++G+I ++QI LPI E +I+D L+ L++EVM + V + Sbjct: 20 ENWEPKTELGRKVKDGEITDIDQILDKGLPIMELEIVDALL-PDLEEEVMDVNLVQR 75
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_PICTO (30S ribosomal protein S5P OS=Picrophilus torridus GN=rps5p PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 1.739e-30 Identity = 52/121 (42.98%), Postives = 75/121 (61.98%), Query Frame = 1 Query: 364 AGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGSTRTLGNF 720 +G+R + VVG+ +G+VG+G +KE A AI+ AI AKL++I ++RG W G+PHT+P V GK GSV+V + PAP G G+ V K +L AGIDD + + G T+T N+ Sbjct: 62 SGRRMNYSITAVVGNGNGYVGVGRGKAKEAAPAIKKAIDNAKLNIIEIKRGCGSWECGCGKPHTLPFLVNGKSGSVSVTLKPAPQGVGLAVGDVVKVILRMAGIDDAWGFAAGHTKTTVNY 182 HSP 2 Score: 55.0694 bits (131), Expect = 1.739e-30 Identity = 27/60 (45.00%), Postives = 40/60 (66.67%), Query Frame = 3 Query: 180 EDKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVHKQT 359 +++W P T+LGRLV G+I+++ + LP+KEYQI+D LI LKDEV+ I + T Sbjct: 2 DEEWTPRTELGRLVANGEIKTISEALHSKLPLKEYQIVDYLI-PDLKDEVINIERAQRMT 60
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_HALSA (30S ribosomal protein S5P OS=Halobacterium salinarium GN=rps5p PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 1.741e-30 Identity = 57/121 (47.11%), Postives = 75/121 (61.98%), Query Frame = 1 Query: 364 AGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGSTRTLGNF 720 +G+R +F+ V +G+ DG+VG +V AI+ AI +AKL++I V RG W GRPHTV K TGK GSV V ++PAP G G+ ++VL AGIDDV+T S G TRT NF Sbjct: 64 SGRRVKFRCVVAIGNRDGYVGYAEGRDDQVGGAIQKAIEVAKLNIIDVSRGCGSWECGCGRPHTVALKSTGKAGSVDVELMPAPRGLGLAGGETVQHVLELAGIDDVWTRSSGKTRTTVNF 184 HSP 2 Score: 45.0542 bits (105), Expect = 1.741e-30 Identity = 23/59 (38.98%), Postives = 36/59 (61.02%), Query Frame = 3 Query: 183 DKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVHKQT 359 D W P T+LG LV++G++ + + LP+KE +I+D L+ L DEV+ I V + T Sbjct: 5 DTWQPKTRLGGLVQDGEVEDMSEALDTGLPLKEPEIVDQLL-PGLDDEVLDINMVQRMT 62 The following BLAST results are available for this feature:
BLAST of CB290993 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 179
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Sequences
The
following sequences are available for this feature:
EST sequence >CB290993 ID=CB290993; Name=CB290993; organism=Citrus sinensis; type=EST; length=721bpback to top |