CB290993

Overview
NameCB290993
Unique NameCB290993
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_METHJ (30S ribosomal protein S5P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps5p PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.107e-31
Identity = 53/121 (43.80%), Postives = 76/121 (62.81%), Query Frame = 1
Query:  364 AGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGSTRTLGNF 720
            +G+R +F+A VVVG+ DG++G G     +V  AI+ AI+ AK++++ VRRG   W      PH++P  VTG  GSV V + PAP G G+V   + K VL  AGI DV+  ++G TRT  N+
Sbjct:   65 SGRRVKFRAVVVVGNRDGYIGFGQGKDAQVGDAIKKAIVSAKINLVKVRRGCGSWECGCSNPHSIPMLVTGDAGSVRVTLRPAPQGIGLVTGDIGKKVLELAGIRDVWAQTQGQTRTTINY 185          

HSP 2 Score: 51.2174 bits (121), Expect = 2.107e-31
Identity = 25/61 (40.98%), Postives = 41/61 (67.21%), Query Frame = 3
Query:  177 EEDKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVHKQT 359
            ++ +WVP+T LGR+V+ G+I+S+++I     PIKE +I+D  +   L DEV+ I  V + T
Sbjct:    4 DKSEWVPLTGLGRMVQAGEIKSIDEILSSGKPIKEPEIVDAFL-PDLVDEVLDINMVQRMT 63          
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_METMJ (30S ribosomal protein S5P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps5p PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.107e-31
Identity = 55/121 (45.45%), Postives = 76/121 (62.81%), Query Frame = 1
Query:  364 AGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGSTRTLGNF 720
            +G+R +F+  VVVG+ +G+VG G     +V  AI+ AI+ AKL++I V RG   W       H++P +VTGK GSV V + PAP G G+V   +PK VL  AGI DV+  +RG TRT  N+
Sbjct:   65 SGRRVKFRTVVVVGNRNGYVGFGQGKDVQVGNAIQKAIVNAKLNLIKVSRGCGSWECGCETAHSIPIEVTGKAGSVKVTLKPAPQGIGLVTGDIPKKVLMLAGIKDVWAFNRGQTRTTINY 185          

HSP 2 Score: 52.7582 bits (125), Expect = 2.107e-31
Identity = 25/60 (41.67%), Postives = 41/60 (68.33%), Query Frame = 3
Query:  180 EDKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVHKQT 359
            +++W+P+T LGR+V  G+I S++++     PIKE QI+D L+   L+DEV+ I  V + T
Sbjct:    5 QEEWIPLTGLGRMVAAGEITSIDEVLASGRPIKEPQIVDLLL-PDLEDEVLDINMVQRMT 63          
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_UNCMA (30S ribosomal protein S5P OS=Uncultured methanogenic archaeon RC-I GN=rps5p PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.741e-31
Identity = 54/121 (44.63%), Postives = 73/121 (60.33%), Query Frame = 1
Query:  364 AGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGSTRTLGNF 720
            +G+R +F+  VVVG+ +G+VGL      +V  AIR AI  AKL++I V RG   W    G  HTVP +V G+ GS+ V ++PAP G G+ A    K VL  AG  DV++ + G TRT  NF
Sbjct:   69 SGRRVKFRTTVVVGNGNGYVGLAQGKGVQVGPAIRKAIENAKLNIIKVARGCGSWECGCGLTHTVPSQVEGRAGSLKVVLMPAPRGLGLAAGGPAKKVLEMAGYKDVWSRTEGETRTTINF 189          

HSP 2 Score: 60.077 bits (144), Expect = 2.741e-31
Identity = 29/61 (47.54%), Postives = 42/61 (68.85%), Query Frame = 3
Query:  177 EEDKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVHKQT 359
            E+  W+P T+LG++V EGKI ++E+ +   LPIKEYQI+D L+   L DEV+ I  V + T
Sbjct:    8 EQAAWIPKTRLGKMVAEGKITTMEEAFETGLPIKEYQIVDALL-PDLVDEVLDISMVQRMT 67          
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_METM5 (30S ribosomal protein S5P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps5p PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.045e-31
Identity = 61/123 (49.59%), Postives = 79/123 (64.23%), Query Frame = 1
Query:  358 HGAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGSTRTLGNF 720
            H +G+R R++A V VG+ +G+VG+G+  SKEV  AIR AI  AKLS+I VR G   W    G PH++P    G CGSV V ++PAP G G+VA  V K VL  AG+ D +T + G TRT  NF
Sbjct:   75 HKSGRRARYRATVAVGNKNGYVGVGMGKSKEVGPAIRKAIAHAKLSLIKVRVGCGSWECGCGSPHSIPFAAKGACGSVKVELLPAPRGVGLVAGNVAKAVLGLAGVKDAWTKTFGDTRTTFNF 197          

HSP 2 Score: 40.0466 bits (92), Expect = 6.045e-31
Identity = 19/57 (33.33%), Postives = 35/57 (61.40%), Query Frame = 3
Query:  183 DKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVHK 353
            + W P T++GR+V+EG I  +  I    LP+ E +I+D L+   L+++V+ +  V +
Sbjct:   18 EAWEPKTQIGRMVKEGTISDISYIMDKGLPLLEPEIVDALL-PDLEEQVLDVKLVQR 73          
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_META3 (30S ribosomal protein S5P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps5p PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.876e-31
Identity = 62/123 (50.41%), Postives = 78/123 (63.41%), Query Frame = 1
Query:  358 HGAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGSTRTLGNF 720
            H +G+R RF+A  VVG+ +G VG+G+  SKEV  AIR AI  AKLS+I VR G   W    G  H++P    G CGSV V ++PAP G G+VA  V K VL  AGI D++T + G TRT  NF
Sbjct:   68 HKSGRRARFRATAVVGNRNGFVGVGMGKSKEVGPAIRKAIAHAKLSLIKVRTGCGSWECGCGTAHSIPFAAKGSCGSVKVELLPAPRGVGLVAGNVAKAVLGLAGIKDIWTKTFGDTRTTYNF 190          

HSP 2 Score: 40.0466 bits (92), Expect = 7.876e-31
Identity = 19/57 (33.33%), Postives = 36/57 (63.16%), Query Frame = 3
Query:  183 DKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVHK 353
            D W P T++G+ V+EG I  ++ I  + LP+ E +I+D L+   L+++V+ +  V +
Sbjct:   11 DAWEPKTQVGKKVKEGTITDIDYIIDNGLPLLEPEIVDALL-PDLEEQVLDVSLVQR 66          
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_PYRKO (30S ribosomal protein S5P OS=Pyrococcus kodakaraensis GN=rps5p PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.024e-30
Identity = 54/121 (44.63%), Postives = 78/121 (64.46%), Query Frame = 1
Query:  364 AGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGSTRTLGNF 720
            +G+R RF+    VG+ DG+VGLG+   +EV  AIR AI  AK+++I ++RG   W  +  RPH++P  V GK GSV V+++P P G G+V   V K +L  AG+ DV++ + G TRT  NF
Sbjct:   76 SGRRIRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKMNIIEIKRGCGSWECRCRRPHSIPFAVEGKEGSVRVKLMPGPRGLGLVIGDVGKKILTLAGVQDVWSQTLGETRTTVNF 196          

HSP 2 Score: 45.0542 bits (105), Expect = 1.024e-30
Identity = 19/41 (46.34%), Postives = 29/41 (70.73%), Query Frame = 3
Query:  183 DKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLI 305
            ++W P TKLGRLV+EG+I  + +I+     IKE +I+D L+
Sbjct:   13 EEWEPKTKLGRLVKEGQITDIHEIFRKGYQIKEPEIVDVLL 53          
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_SULAC (30S ribosomal protein S5P OS=Sulfolobus acidocaldarius GN=rps5p PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.337e-30
Identity = 52/121 (42.98%), Postives = 77/121 (63.64%), Query Frame = 1
Query:  364 AGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGSTRTLGNF 720
            AG+ +R+K  +V+G+ DG++  G   +K++  AI+ AI  AK+ +IPVRRG   W    G  H++P  V+GK GSV V ++PAP G G+V   V K  L  AG+ DV++ ++GST T  NF
Sbjct:   70 AGELSRYKVLIVMGNMDGYISYGTGKAKQLRVAIQKAIRDAKMRIIPVRRGCGSWECTCGESHSLPFIVSGKAGSVEVTLLPAPKGTGLVVGSVLKTFLSLAGLKDVWSRTKGSTYTHENF 190          

HSP 2 Score: 52.7582 bits (125), Expect = 1.337e-30
Identity = 25/59 (42.37%), Postives = 43/59 (72.88%), Query Frame = 3
Query:  183 DKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVHKQT 359
            + W P TK+G+L++EGKI S+++++  +LPI E +I+D L+  KL+ +++ I  V KQT
Sbjct:   11 EDWKPRTKVGQLIKEGKINSMKELFERNLPIVEPEIVDVLL-PKLRYDIVDIGIVQKQT 68          
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_METST (30S ribosomal protein S5P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps5p PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.738e-30
Identity = 56/123 (45.53%), Postives = 76/123 (61.79%), Query Frame = 1
Query:  358 HGAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGSTRTLGNF 720
            H +G++  F+  V VG+ +G+VGLG   S+EV  AIR A+  AK ++I VRRG   WG   GR HTVP K+ GK  SV+  ++PAP G G+    V K +L  AGI DV++   G T+T  NF
Sbjct:   77 HKSGRKVNFRVIVAVGNRNGYVGLGQGKSQEVGPAIRKAVDAAKYNLIKVRRGCGDWGCGCGRRHTVPFKIEGKMSSVSATLIPAPAGVGLAIGNVGKTILSLAGIADVWSMCSGQTQTTINF 199          

HSP 2 Score: 46.2098 bits (108), Expect = 1.738e-30
Identity = 23/57 (40.35%), Postives = 37/57 (64.91%), Query Frame = 3
Query:  183 DKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVHK 353
            + W P T+LGR V++G+I  ++QI    LPI E +I+D L+   L++EVM +  V +
Sbjct:   20 ENWEPKTELGRKVKDGEITDIDQILDKGLPIMELEIVDALL-PDLEEEVMDVNLVQR 75          
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_PICTO (30S ribosomal protein S5P OS=Picrophilus torridus GN=rps5p PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.739e-30
Identity = 52/121 (42.98%), Postives = 75/121 (61.98%), Query Frame = 1
Query:  364 AGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGSTRTLGNF 720
            +G+R  +    VVG+ +G+VG+G   +KE A AI+ AI  AKL++I ++RG   W    G+PHT+P  V GK GSV+V + PAP G G+    V K +L  AGIDD +  + G T+T  N+
Sbjct:   62 SGRRMNYSITAVVGNGNGYVGVGRGKAKEAAPAIKKAIDNAKLNIIEIKRGCGSWECGCGKPHTLPFLVNGKSGSVSVTLKPAPQGVGLAVGDVVKVILRMAGIDDAWGFAAGHTKTTVNY 182          

HSP 2 Score: 55.0694 bits (131), Expect = 1.739e-30
Identity = 27/60 (45.00%), Postives = 40/60 (66.67%), Query Frame = 3
Query:  180 EDKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVHKQT 359
            +++W P T+LGRLV  G+I+++ +     LP+KEYQI+D LI   LKDEV+ I    + T
Sbjct:    2 DEEWTPRTELGRLVANGEIKTISEALHSKLPLKEYQIVDYLI-PDLKDEVINIERAQRMT 60          
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_HALSA (30S ribosomal protein S5P OS=Halobacterium salinarium GN=rps5p PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.741e-30
Identity = 57/121 (47.11%), Postives = 75/121 (61.98%), Query Frame = 1
Query:  364 AGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGSTRTLGNF 720
            +G+R +F+  V +G+ DG+VG       +V  AI+ AI +AKL++I V RG   W    GRPHTV  K TGK GSV V ++PAP G G+      ++VL  AGIDDV+T S G TRT  NF
Sbjct:   64 SGRRVKFRCVVAIGNRDGYVGYAEGRDDQVGGAIQKAIEVAKLNIIDVSRGCGSWECGCGRPHTVALKSTGKAGSVDVELMPAPRGLGLAGGETVQHVLELAGIDDVWTRSSGKTRTTVNF 184          

HSP 2 Score: 45.0542 bits (105), Expect = 1.741e-30
Identity = 23/59 (38.98%), Postives = 36/59 (61.02%), Query Frame = 3
Query:  183 DKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVHKQT 359
            D W P T+LG LV++G++  + +     LP+KE +I+D L+   L DEV+ I  V + T
Sbjct:    5 DTWQPKTRLGGLVQDGEVEDMSEALDTGLPLKEPEIVDQLL-PGLDDEVLDINMVQRMT 62          
The following BLAST results are available for this feature:
BLAST of CB290993 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 179
Match NameE-valueIdentityDescription
RS5_METHJ2.107e-3143.8030S ribosomal protein S5P OS=Methanospirillum hung... [more]
RS5_METMJ2.107e-3145.4530S ribosomal protein S5P OS=Methanoculleus marisn... [more]
RS5_UNCMA2.741e-3144.6330S ribosomal protein S5P OS=Uncultured methanogen... [more]
RS5_METM56.045e-3149.5930S ribosomal protein S5P OS=Methanococcus maripal... [more]
RS5_META37.876e-3150.4130S ribosomal protein S5P OS=Methanococcus aeolicu... [more]
RS5_PYRKO1.024e-3044.6330S ribosomal protein S5P OS=Pyrococcus kodakaraen... [more]
RS5_SULAC1.337e-3042.9830S ribosomal protein S5P OS=Sulfolobus acidocalda... [more]
RS5_METST1.738e-3045.5330S ribosomal protein S5P OS=Methanosphaera stadtm... [more]
RS5_PICTO1.739e-3042.9830S ribosomal protein S5P OS=Picrophilus torridus ... [more]
RS5_HALSA1.741e-3047.1130S ribosomal protein S5P OS=Halobacterium salinar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ag10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ag10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290993 ID=CB290993; Name=CB290993; organism=Citrus sinensis; type=EST; length=721bp
GCTCGCATTTTTCACTCTCCCAAAGCCCAAACCCTAGCTTCAAACCCTAA
ACCCACAAGAACAAAACCATGGCTGAACGAGGTGGCGAGCGCGGTGCATT
CGGACGCGGCTTCGGCCGTGGTGGGCGGGGCGACCGTGGAGGCCCACGTG
GCCGTCGCCGCGCTGGACGCACAGAGGAAGAAGATAAGTGGGTCCCAGTC
ACGAAACTCGGCCGTCTGGTGAGAGAAGGCAAGATCAGGAGCCTCGAGCA
AATCTACCTCCACTCGCTCCCAATCAAGGAGTATCAAATCATCGACACGC
TTATCGGCCACAAATTGAAGGACGAGGTCATGAAGATCATGCCGGTGCAC
AAACAGACACGGTGCCGGTCAGAGGACGAGGTTCAAGGCCTTCGTCGTCG
TCGGTGACACGGACGGCCACGTGGGTCTTGGCGTTAAGTGCTCCAAAGAG
GTTGCCACTGCCATCCGTGGCGCTATCATATTGGCGAAGCTGTCGGTGAT
TCCTGTGAGAAGGGGTTACTGGGGTAACAAAATCGGGAGGCCACACACCG
TGCCGTGTAAGGTGACCGGTAAGTGTGGCAGTGTCACCGTGAGGATGGTT
CCGGCCCCACATGGTGCCGGAATTGTGGCGGCTAGGGTTCCAAAGAACGT
GCTGCACTTTGCTGGTATTGACGATGTTTTCACATCTTCTCGTGGGTCGA
CCAGGACTCTTGGAAACTTTG
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