CB290993

Overview
NameCB290993
Unique NameCB290993
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_METLZ (30S ribosomal protein S5P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps5p PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.742e-30
Identity = 58/121 (47.93%), Postives = 79/121 (65.29%), Query Frame = 1
Query:  364 AGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGSTRTLGNF 720
            +G+R +F+A VV+G+ +G+VG G     +V TAI+ AI  AKL+++ VRRG   W    G  H+VP +VTGK GSV V + PAP G G+V   V K VL  AGI DV+ ++ G+TRT  NF
Sbjct:   65 SGRRIKFRAVVVIGNKNGYVGFGQGRDVQVGTAIKKAITNAKLNIVKVRRGCGSWECGCGMKHSVPMEVTGKAGSVAVTLKPAPKGIGLVTGDVGKKVLTLAGIQDVWVNTSGNTRTTLNF 185          

HSP 2 Score: 44.2838 bits (103), Expect = 1.742e-30
Identity = 24/61 (39.34%), Postives = 36/61 (59.02%), Query Frame = 3
Query:  177 EEDKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVHKQT 359
            E++ WVPVT LG+ V  G+  S ++I     PIKE  I+D ++   L DEV+ I  + + T
Sbjct:    4 EQEVWVPVTGLGKKVMAGEFASFDEILASGQPIKEAGIVDAML-PDLVDEVLCIDMMQRMT 63          
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_HALMA (30S ribosomal protein S5P OS=Haloarcula marismortui GN=rps5p PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.188e-28
Identity = 53/121 (43.80%), Postives = 72/121 (59.50%), Query Frame = 1
Query:  364 AGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGSTRTLGNF 720
            +G+R +F+  V VG+ DG +G       +V  AI+ AI +AKL++I V RG   W    GRPHTV  +  GK GSV V + PAP G G+      + VL  AGI+D++T S G+TRT  NF
Sbjct:   64 SGRRVKFRCVVAVGNRDGLIGYAEGRDDQVGGAIQKAIDIAKLNIIDVSRGCGSWECGCGRPHTVALRTEGKAGSVEVELQPAPRGLGLAGGETVRKVLELAGIEDIWTRSSGNTRTTVNF 184          

HSP 2 Score: 45.8246 bits (107), Expect = 1.188e-28
Identity = 23/57 (40.35%), Postives = 37/57 (64.91%), Query Frame = 3
Query:  189 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVHKQT 359
            W P T+LG+ V EG+I S+++     LP+KE +++D L+   L+DEV+ I  V + T
Sbjct:    7 WEPRTRLGKQVVEGEIDSMQEALNSGLPLKESEVVDQLV-PDLEDEVLDINMVQRMT 62          
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_NANEQ (30S ribosomal protein S5P OS=Nanoarchaeum equitans GN=rps5p PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.407e-28
Identity = 54/119 (45.38%), Postives = 71/119 (59.66%), Query Frame = 1
Query:  367 GQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGSTRTLGN 717
            G +TR++   +VGD DGHVG+G+  S ++  A   AI  AKL++I V RG   W    G PH++P +V GK GSV V + PAP G GIVA    K +   AGI DV+  S G T+T  N
Sbjct:   78 GNKTRYEVIAIVGDKDGHVGVGLGRSSDLLIAREKAINRAKLNIIKVARGCGSWECACGAPHSIPYQVEGKSGSVRVILKPAPKGVGIVADDEIKKIFRLAGIKDVWVRSFGKTKTKMN 196          

HSP 2 Score: 46.595 bits (109), Expect = 3.407e-28
Identity = 23/51 (45.10%), Postives = 37/51 (72.55%), Query Frame = 3
Query:  183 DKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMK 335
            ++W P TKLGRLV+EGKI ++++I  +   I+E +I+D L+ + L+ E MK
Sbjct:    5 EEWQPKTKLGRLVKEGKITNIDEILSNKYVIREPEIVDVLLPN-LEVEFMK 54          
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_METB6 (30S ribosomal protein S5P OS=Methanoregula boonei (strain 6A8) GN=rps5p PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.449e-28
Identity = 51/121 (42.15%), Postives = 74/121 (61.16%), Query Frame = 1
Query:  364 AGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGSTRTLGNF 720
            +G+R +F+A V+VG+ +G++G G     +V  AI+ AI  AK++++ VRRG   W       H++P +V G  GSV V + PAP G G+V   + K VL  AGI D +T +RG TRT  NF
Sbjct:   65 SGRRVQFRAVVIVGNRNGYIGFGQGKDVQVGDAIKKAITKAKMNLVKVRRGCGSWECGCAVLHSIPMQVEGTAGSVRVTLKPAPQGIGLVTGDISKKVLELAGIKDAWTFARGQTRTTINF 185          

HSP 2 Score: 47.3654 bits (111), Expect = 4.449e-28
Identity = 24/61 (39.34%), Postives = 39/61 (63.93%), Query Frame = 3
Query:  177 EEDKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVHKQT 359
            E+ +W PVT LG+ V  G+I+S++Q+     PIKE +I+D  +   L+DEV+ I  + + T
Sbjct:    4 EKAEWRPVTGLGKQVASGEIKSIDQVLESGRPIKEPEIVDMFL-PDLEDEVLDIAMMQRMT 63          
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_HALWD (30S ribosomal protein S5P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps5p PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.664e-27
Identity = 47/120 (39.17%), Postives = 73/120 (60.83%), Query Frame = 1
Query:  364 AGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGSTRTLGN 717
            +G+R +F+  V +G+ +G +G       +V +AI+ AI +AKL++I V RG   W +  G  +++     GK GSVTV ++PAP G G+ AA    N+L  AG++D +T S G+TRT  N
Sbjct:   68 SGRRVKFRCVVAIGNRNGFLGYAEGRDDQVGSAIQKAIDVAKLNLISVDRGSGSWEDSAGGVNSLTRNAEGKAGSVTVEVMPAPQGLGLAAAETVSNILELAGVEDAWTRSNGNTRTTVN 187          

HSP 2 Score: 50.447 bits (119), Expect = 3.664e-27
Identity = 25/59 (42.37%), Postives = 38/59 (64.41%), Query Frame = 3
Query:  183 DKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVHKQT 359
            D W P T+LGR+V++G + S+EQ     LP+KE +++D L+   L DEV+ I  V + T
Sbjct:    9 DGWTPRTRLGRMVQDGDVTSMEQALNSGLPLKEPELVDQLL-PGLDDEVLDINMVQRMT 66          
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_NATPD (30S ribosomal protein S5P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps5p PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 6.670e-26
Identity = 48/120 (40.00%), Postives = 75/120 (62.50%), Query Frame = 1
Query:  364 AGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI--PVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGSTRTLGN 717
            +G+R +F+  VV+G+ DG+VG       +V  AI+ AI +AKL++I  P+  G W ++ G  +++  + TGK GSV V + PAP G G+ AA   ++VL  AG++D +T   G+TRT  N
Sbjct:   62 SGRRVKFRCVVVIGNRDGYVGYAQGRDDQVGGAIQKAIDVAKLNIIDVPLGSGSWEDRPGGRNSLMRRTTGKAGSVEVELKPAPRGLGLAAAPTVRHVLELAGVEDAWTKCHGNTRTTLN 181          

HSP 2 Score: 45.0542 bits (105), Expect = 6.670e-26
Identity = 23/57 (40.35%), Postives = 36/57 (63.16%), Query Frame = 3
Query:  189 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVHKQT 359
            W P T+LGR V +G+I S++      LP+KE +++D L+   L+DEV+ I  V + T
Sbjct:    5 WEPRTRLGRKVADGEITSMQDALQSGLPLKEPELVDQLL-PGLEDEVLDINMVQRMT 60          
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_CENSY (30S ribosomal protein S5P OS=Cenarchaeum symbiosum GN=rps5p PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.667e-24
Identity = 48/116 (41.38%), Postives = 73/116 (62.93%), Query Frame = 1
Query:  367 GQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGSTRT 708
            GQ TRFKA V  G+ +G++G+G   +K++  AI  A   A L+V P++ G   W  +  + H+VP KV GK GSV + ++PAP G G+VA    + +L  AG+ D +T+++GST T
Sbjct:   85 GQSTRFKAIVAAGNENGYLGIGQGKAKQMRIAIEKANNQALLNVGPIKLGCGSWECRCDQKHSVPFKVRGKGGSVVIEILPAPRGLGLVAGGKIRRLLELAGLKDAYTTAKGSTPT 200          

HSP 2 Score: 40.817 bits (94), Expect = 2.667e-24
Identity = 26/61 (42.62%), Postives = 34/61 (55.74%), Query Frame = 3
Query:  177 EEDKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVHKQT 359
            EE  WVP T LG+ V  G+I SLE+I      I+E  II  L+   LK EV+ +  + K T
Sbjct:   23 EEAPWVPKTALGKRVNAGEITSLEEIQEAGARIQESGIIKKLL-PDLKTEVVDVGIIQKMT 82          
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_LACSS (30S ribosomal protein S5 OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=rpsE PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.243e-13
Identity = 47/111 (42.34%), Postives = 66/111 (59.46%), Query Frame = 1
Query:  367 GQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGS 699
            G+R RF A V+VGD +GHVG G   ++EV  AIR A+  AK ++I V       K+G   T+P +V G+ G+  V + PA  G+GI A    + V+  AGIDDV + + GS
Sbjct:   28 GRRLRFAAIVIVGDKNGHVGFGTGKAQEVPEAIRKAVEDAKKNLINV------PKVGT--TLPHEVIGRFGAGRVLLKPAVEGSGIAAGGAVRAVMELAGIDDVTSKTLGS 130          
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_BACLD (30S ribosomal protein S5 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rpsE PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.232e-12
Identity = 43/111 (38.74%), Postives = 64/111 (57.66%), Query Frame = 1
Query:  367 GQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGS 699
            G+R RF A VVVGD +GHVG G   ++EV  AIR A+  AK ++I V        +G   T+P ++ G+ G+  + + PA  G G++A    + VL  AG+ D+ + S GS
Sbjct:   30 GRRFRFAALVVVGDKNGHVGFGTGKAQEVPEAIRKAVEDAKKNLIEV------PMVGT--TIPHEIIGRFGAGNILLKPASEGTGVIAGGPVRAVLELAGVSDILSKSLGS 132          
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_PELPB (30S ribosomal protein S5 OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.609e-12
Identity = 46/114 (40.35%), Postives = 61/114 (53.51%), Query Frame = 1
Query:  367 GQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI--PVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGST 702
            G+R  F A VVVGD +GHVG G+  + EV  AI   I   K +VI  P+ +G          T+P ++  K GS  V M PA  G G++A    + VL  AGI D+ T S GS+
Sbjct:   33 GKRFGFNAIVVVGDKEGHVGYGLGKANEVQDAIAKGIEDGKKNVIKVPIVKG----------TIPHQIVAKFGSAKVMMKPATPGTGLIAGGAVRAVLEMAGIHDILTKSLGSS 136          
The following BLAST results are available for this feature:
BLAST of CB290993 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 179
Match NameE-valueIdentityDescription
RS5_METLZ1.742e-3047.9330S ribosomal protein S5P OS=Methanocorpusculum la... [more]
RS5_HALMA1.188e-2843.8030S ribosomal protein S5P OS=Haloarcula marismortu... [more]
RS5_NANEQ3.407e-2845.3830S ribosomal protein S5P OS=Nanoarchaeum equitans... [more]
RS5_METB64.449e-2842.1530S ribosomal protein S5P OS=Methanoregula boonei ... [more]
RS5_HALWD3.664e-2739.1730S ribosomal protein S5P OS=Haloquadratum walsbyi... [more]
RS5_NATPD6.670e-2640.0030S ribosomal protein S5P OS=Natronomonas pharaoni... [more]
RS5_CENSY2.667e-2441.3830S ribosomal protein S5P OS=Cenarchaeum symbiosum... [more]
RS5_LACSS3.243e-1342.3430S ribosomal protein S5 OS=Lactobacillus sakei su... [more]
RS5_BACLD1.232e-1238.7430S ribosomal protein S5 OS=Bacillus licheniformis... [more]
RS5_PELPB1.609e-1240.3530S ribosomal protein S5 OS=Pelodictyon phaeoclath... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_02ag10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ag10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290993 ID=CB290993; Name=CB290993; organism=Citrus sinensis; type=EST; length=721bp
GCTCGCATTTTTCACTCTCCCAAAGCCCAAACCCTAGCTTCAAACCCTAA
ACCCACAAGAACAAAACCATGGCTGAACGAGGTGGCGAGCGCGGTGCATT
CGGACGCGGCTTCGGCCGTGGTGGGCGGGGCGACCGTGGAGGCCCACGTG
GCCGTCGCCGCGCTGGACGCACAGAGGAAGAAGATAAGTGGGTCCCAGTC
ACGAAACTCGGCCGTCTGGTGAGAGAAGGCAAGATCAGGAGCCTCGAGCA
AATCTACCTCCACTCGCTCCCAATCAAGGAGTATCAAATCATCGACACGC
TTATCGGCCACAAATTGAAGGACGAGGTCATGAAGATCATGCCGGTGCAC
AAACAGACACGGTGCCGGTCAGAGGACGAGGTTCAAGGCCTTCGTCGTCG
TCGGTGACACGGACGGCCACGTGGGTCTTGGCGTTAAGTGCTCCAAAGAG
GTTGCCACTGCCATCCGTGGCGCTATCATATTGGCGAAGCTGTCGGTGAT
TCCTGTGAGAAGGGGTTACTGGGGTAACAAAATCGGGAGGCCACACACCG
TGCCGTGTAAGGTGACCGGTAAGTGTGGCAGTGTCACCGTGAGGATGGTT
CCGGCCCCACATGGTGCCGGAATTGTGGCGGCTAGGGTTCCAAAGAACGT
GCTGCACTTTGCTGGTATTGACGATGTTTTCACATCTTCTCGTGGGTCGA
CCAGGACTCTTGGAAACTTTG
back to top