CB290993
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_METLZ (30S ribosomal protein S5P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps5p PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 1.742e-30 Identity = 58/121 (47.93%), Postives = 79/121 (65.29%), Query Frame = 1 Query: 364 AGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGSTRTLGNF 720 +G+R +F+A VV+G+ +G+VG G +V TAI+ AI AKL+++ VRRG W G H+VP +VTGK GSV V + PAP G G+V V K VL AGI DV+ ++ G+TRT NF Sbjct: 65 SGRRIKFRAVVVIGNKNGYVGFGQGRDVQVGTAIKKAITNAKLNIVKVRRGCGSWECGCGMKHSVPMEVTGKAGSVAVTLKPAPKGIGLVTGDVGKKVLTLAGIQDVWVNTSGNTRTTLNF 185 HSP 2 Score: 44.2838 bits (103), Expect = 1.742e-30 Identity = 24/61 (39.34%), Postives = 36/61 (59.02%), Query Frame = 3 Query: 177 EEDKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVHKQT 359 E++ WVPVT LG+ V G+ S ++I PIKE I+D ++ L DEV+ I + + T Sbjct: 4 EQEVWVPVTGLGKKVMAGEFASFDEILASGQPIKEAGIVDAML-PDLVDEVLCIDMMQRMT 63
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_HALMA (30S ribosomal protein S5P OS=Haloarcula marismortui GN=rps5p PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.188e-28 Identity = 53/121 (43.80%), Postives = 72/121 (59.50%), Query Frame = 1 Query: 364 AGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGSTRTLGNF 720 +G+R +F+ V VG+ DG +G +V AI+ AI +AKL++I V RG W GRPHTV + GK GSV V + PAP G G+ + VL AGI+D++T S G+TRT NF Sbjct: 64 SGRRVKFRCVVAVGNRDGLIGYAEGRDDQVGGAIQKAIDIAKLNIIDVSRGCGSWECGCGRPHTVALRTEGKAGSVEVELQPAPRGLGLAGGETVRKVLELAGIEDIWTRSSGNTRTTVNF 184 HSP 2 Score: 45.8246 bits (107), Expect = 1.188e-28 Identity = 23/57 (40.35%), Postives = 37/57 (64.91%), Query Frame = 3 Query: 189 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVHKQT 359 W P T+LG+ V EG+I S+++ LP+KE +++D L+ L+DEV+ I V + T Sbjct: 7 WEPRTRLGKQVVEGEIDSMQEALNSGLPLKESEVVDQLV-PDLEDEVLDINMVQRMT 62
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_NANEQ (30S ribosomal protein S5P OS=Nanoarchaeum equitans GN=rps5p PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 3.407e-28 Identity = 54/119 (45.38%), Postives = 71/119 (59.66%), Query Frame = 1 Query: 367 GQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGSTRTLGN 717 G +TR++ +VGD DGHVG+G+ S ++ A AI AKL++I V RG W G PH++P +V GK GSV V + PAP G GIVA K + AGI DV+ S G T+T N Sbjct: 78 GNKTRYEVIAIVGDKDGHVGVGLGRSSDLLIAREKAINRAKLNIIKVARGCGSWECACGAPHSIPYQVEGKSGSVRVILKPAPKGVGIVADDEIKKIFRLAGIKDVWVRSFGKTKTKMN 196 HSP 2 Score: 46.595 bits (109), Expect = 3.407e-28 Identity = 23/51 (45.10%), Postives = 37/51 (72.55%), Query Frame = 3 Query: 183 DKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMK 335 ++W P TKLGRLV+EGKI ++++I + I+E +I+D L+ + L+ E MK Sbjct: 5 EEWQPKTKLGRLVKEGKITNIDEILSNKYVIREPEIVDVLLPN-LEVEFMK 54
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_METB6 (30S ribosomal protein S5P OS=Methanoregula boonei (strain 6A8) GN=rps5p PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 4.449e-28 Identity = 51/121 (42.15%), Postives = 74/121 (61.16%), Query Frame = 1 Query: 364 AGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGSTRTLGNF 720 +G+R +F+A V+VG+ +G++G G +V AI+ AI AK++++ VRRG W H++P +V G GSV V + PAP G G+V + K VL AGI D +T +RG TRT NF Sbjct: 65 SGRRVQFRAVVIVGNRNGYIGFGQGKDVQVGDAIKKAITKAKMNLVKVRRGCGSWECGCAVLHSIPMQVEGTAGSVRVTLKPAPQGIGLVTGDISKKVLELAGIKDAWTFARGQTRTTINF 185 HSP 2 Score: 47.3654 bits (111), Expect = 4.449e-28 Identity = 24/61 (39.34%), Postives = 39/61 (63.93%), Query Frame = 3 Query: 177 EEDKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVHKQT 359 E+ +W PVT LG+ V G+I+S++Q+ PIKE +I+D + L+DEV+ I + + T Sbjct: 4 EKAEWRPVTGLGKQVASGEIKSIDQVLESGRPIKEPEIVDMFL-PDLEDEVLDIAMMQRMT 63
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_HALWD (30S ribosomal protein S5P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps5p PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 3.664e-27 Identity = 47/120 (39.17%), Postives = 73/120 (60.83%), Query Frame = 1 Query: 364 AGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGSTRTLGN 717 +G+R +F+ V +G+ +G +G +V +AI+ AI +AKL++I V RG W + G +++ GK GSVTV ++PAP G G+ AA N+L AG++D +T S G+TRT N Sbjct: 68 SGRRVKFRCVVAIGNRNGFLGYAEGRDDQVGSAIQKAIDVAKLNLISVDRGSGSWEDSAGGVNSLTRNAEGKAGSVTVEVMPAPQGLGLAAAETVSNILELAGVEDAWTRSNGNTRTTVN 187 HSP 2 Score: 50.447 bits (119), Expect = 3.664e-27 Identity = 25/59 (42.37%), Postives = 38/59 (64.41%), Query Frame = 3 Query: 183 DKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVHKQT 359 D W P T+LGR+V++G + S+EQ LP+KE +++D L+ L DEV+ I V + T Sbjct: 9 DGWTPRTRLGRMVQDGDVTSMEQALNSGLPLKEPELVDQLL-PGLDDEVLDINMVQRMT 66
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_NATPD (30S ribosomal protein S5P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps5p PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 6.670e-26 Identity = 48/120 (40.00%), Postives = 75/120 (62.50%), Query Frame = 1 Query: 364 AGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI--PVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGSTRTLGN 717 +G+R +F+ VV+G+ DG+VG +V AI+ AI +AKL++I P+ G W ++ G +++ + TGK GSV V + PAP G G+ AA ++VL AG++D +T G+TRT N Sbjct: 62 SGRRVKFRCVVVIGNRDGYVGYAQGRDDQVGGAIQKAIDVAKLNIIDVPLGSGSWEDRPGGRNSLMRRTTGKAGSVEVELKPAPRGLGLAAAPTVRHVLELAGVEDAWTKCHGNTRTTLN 181 HSP 2 Score: 45.0542 bits (105), Expect = 6.670e-26 Identity = 23/57 (40.35%), Postives = 36/57 (63.16%), Query Frame = 3 Query: 189 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVHKQT 359 W P T+LGR V +G+I S++ LP+KE +++D L+ L+DEV+ I V + T Sbjct: 5 WEPRTRLGRKVADGEITSMQDALQSGLPLKEPELVDQLL-PGLEDEVLDINMVQRMT 60
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_CENSY (30S ribosomal protein S5P OS=Cenarchaeum symbiosum GN=rps5p PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 2.667e-24 Identity = 48/116 (41.38%), Postives = 73/116 (62.93%), Query Frame = 1 Query: 367 GQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGSTRT 708 GQ TRFKA V G+ +G++G+G +K++ AI A A L+V P++ G W + + H+VP KV GK GSV + ++PAP G G+VA + +L AG+ D +T+++GST T Sbjct: 85 GQSTRFKAIVAAGNENGYLGIGQGKAKQMRIAIEKANNQALLNVGPIKLGCGSWECRCDQKHSVPFKVRGKGGSVVIEILPAPRGLGLVAGGKIRRLLELAGLKDAYTTAKGSTPT 200 HSP 2 Score: 40.817 bits (94), Expect = 2.667e-24 Identity = 26/61 (42.62%), Postives = 34/61 (55.74%), Query Frame = 3 Query: 177 EEDKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVHKQT 359 EE WVP T LG+ V G+I SLE+I I+E II L+ LK EV+ + + K T Sbjct: 23 EEAPWVPKTALGKRVNAGEITSLEEIQEAGARIQESGIIKKLL-PDLKTEVVDVGIIQKMT 82
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_LACSS (30S ribosomal protein S5 OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=rpsE PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.243e-13 Identity = 47/111 (42.34%), Postives = 66/111 (59.46%), Query Frame = 1 Query: 367 GQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGS 699 G+R RF A V+VGD +GHVG G ++EV AIR A+ AK ++I V K+G T+P +V G+ G+ V + PA G+GI A + V+ AGIDDV + + GS Sbjct: 28 GRRLRFAAIVIVGDKNGHVGFGTGKAQEVPEAIRKAVEDAKKNLINV------PKVGT--TLPHEVIGRFGAGRVLLKPAVEGSGIAAGGAVRAVMELAGIDDVTSKTLGS 130
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_BACLD (30S ribosomal protein S5 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rpsE PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.232e-12 Identity = 43/111 (38.74%), Postives = 64/111 (57.66%), Query Frame = 1 Query: 367 GQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGS 699 G+R RF A VVVGD +GHVG G ++EV AIR A+ AK ++I V +G T+P ++ G+ G+ + + PA G G++A + VL AG+ D+ + S GS Sbjct: 30 GRRFRFAALVVVGDKNGHVGFGTGKAQEVPEAIRKAVEDAKKNLIEV------PMVGT--TIPHEIIGRFGAGNILLKPASEGTGVIAGGPVRAVLELAGVSDILSKSLGS 132
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS5_PELPB (30S ribosomal protein S5 OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=rpsE PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.609e-12 Identity = 46/114 (40.35%), Postives = 61/114 (53.51%), Query Frame = 1 Query: 367 GQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI--PVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGST 702 G+R F A VVVGD +GHVG G+ + EV AI I K +VI P+ +G T+P ++ K GS V M PA G G++A + VL AGI D+ T S GS+ Sbjct: 33 GKRFGFNAIVVVGDKEGHVGYGLGKANEVQDAIAKGIEDGKKNVIKVPIVKG----------TIPHQIVAKFGSAKVMMKPATPGTGLIAGGAVRAVLEMAGIHDILTKSLGSS 136 The following BLAST results are available for this feature:
BLAST of CB290993 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 179
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Sequences
The
following sequences are available for this feature:
EST sequence >CB290993 ID=CB290993; Name=CB290993; organism=Citrus sinensis; type=EST; length=721bpback to top |