CB291024

Overview
NameCB291024
Unique NameCB291024
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291024 vs. ExPASy Swiss-Prot
Match: VATB_PLAFA (V-type proton ATPase subunit B OS=Plasmodium falciparum GN=VAPB PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.597e-32
Identity = 70/135 (51.85%), Postives = 88/135 (65.19%), Query Frame = -3
Query:  351 QIYIDRQLQNRQIYPPINVLPSLFRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGXXXXXXXXXXXXXXXXXXERKFVAQGAYDFRNIFQFLDLAWTLFRIFPREVFHRIPGKTLDQYYSRDAVN 755
            QI++DR L NRQIYPPINVLPSL RLMKS IG  MTR DH  VS+QLY+NYAI +DV+AMKAV+G                  E++F+ Q  Y+ R+I+Q LD+AW L RIFP ++  +I    L +YY R   N
Sbjct:  360 QIFVDRNLYNRQIYPPINVLPSLSRLMKSGIGHNMTRIDHPYVSDQLYSNYAIAQDVKAMKAVIGEEALSNDDILYLEFLDKFEKRFITQNTYECRDIYQSLDIAWELLRIFPEDMLKKIKTDILSKYYPRHHAN 494          
BLAST of CB291024 vs. ExPASy Swiss-Prot
Match: VATB_DICT6 (V-type ATP synthase beta chain OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=atpB PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.573e-24
Identity = 56/132 (42.42%), Postives = 79/132 (59.85%), Query Frame = -3
Query:  360 QIYIDRQLQNRQIYPPINVLPSLFRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGXXXXXXXXXXXXXXXXXXERKFVAQGAYDFRNIFQFLDLAWTLFRIFPREVFHRIPGKTLDQYYSRD 755
            QI++ R+L  R IYPPI+VL SL RLM+  IGEG TR+DH D+SNQLYA Y+ G + + +  V+G                  E +F+ QG Y+ R+IF+ LDL W L R  PR    RI  + LD+++ ++
Sbjct:  326 QIFLSRELHRRGIYPPIDVLQSLSRLMRGGIGEGRTRKDHGDLSNQLYAAYSRGLEAKELAVVLGEAALTEEDVQFLEFAEAFEMEFIKQGEYENRSIFETLDLGWKLLRRLPRSSLKRIRPEYLDEFWGKE 457          
BLAST of CB291024 vs. ExPASy Swiss-Prot
Match: VATB_NATPD (V-type ATP synthase beta chain OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=atpB PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.759e-23
Identity = 59/132 (44.70%), Postives = 77/132 (58.33%), Query Frame = -3
Query:  360 QIYIDRQLQNRQIYPPINVLPSLFRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGXXXXXXXXXXXXXXXXXXERKFVAQGAYDFRNIFQFLDLAWTLFRIFPREVFHRIPGKTLDQYYSRD 755
            QIYIDR L ++ I PPINVLPSL RLM   IGEG TR DH DVS+Q YA YA G+D++ +  +VG                  E +FV QG    R++ + LDLAW L    P+E  +RI  + +++YY  D
Sbjct:  332 QIYIDRNLNSQGIEPPINVLPSLSRLMDDGIGEGFTREDHPDVSDQAYAAYAEGEDLRDLVNIVGREALSERDNKYLDFADRFEEEFVQQGYDTNRDVEETLDLAWELLSDLPKEELNRIDEEAIEEYYVED 463          
BLAST of CB291024 vs. ExPASy Swiss-Prot
Match: VATB_DICTD (V-type ATP synthase beta chain OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=atpB PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.759e-23
Identity = 55/132 (41.67%), Postives = 79/132 (59.85%), Query Frame = -3
Query:  360 QIYIDRQLQNRQIYPPINVLPSLFRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGXXXXXXXXXXXXXXXXXXERKFVAQGAYDFRNIFQFLDLAWTLFRIFPREVFHRIPGKTLDQYYSRD 755
            QI++ R+L  R IYPPI+VL SL RLM+  IGEG TR+DH D+SNQLYA Y+ G + + +  V+G                  E +F+ QG Y+ R+IF+ L+L W L R  PR    RI  + LD+++ ++
Sbjct:  326 QIFLSRELHRRGIYPPIDVLQSLSRLMRGGIGEGRTRKDHGDLSNQLYAAYSRGLEAKELAVVLGEAALTEEDVQFLEFAEAFEMEFIKQGEYENRSIFETLNLGWKLLRRLPRASLKRIRPEYLDEFWGKE 457          
BLAST of CB291024 vs. ExPASy Swiss-Prot
Match: VATB2_CLOTE (V-type ATP synthase beta chain 2 OS=Clostridium tetani GN=atpB2 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.759e-23
Identity = 55/132 (41.67%), Postives = 78/132 (59.09%), Query Frame = -3
Query:  360 QIYIDRQLQNRQIYPPINVLPSLFRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGXXXXXXXXXXXXXXXXXXERKFVAQGAYDFRNIFQFLDLAWTLFRIFPREVFHRIPGKTLDQYYSRD 755
            QI + R L  + IYPP+N+LPSL RLMK  IGEG TR DH++VSNQL+A+Y+  +DV ++  V+G                  E KF+ QG  D R+I + LDLAW +  I P+    R+  + L+++Y  D
Sbjct:  328 QIVLSRDLSGKNIYPPVNILPSLSRLMKDGIGEGYTREDHAEVSNQLFASYSYVQDVISLSQVIGEDELSPVDKIYMEFGREFESKFLNQGFEDNRSIDETLDLAWEILSILPKSQLDRVSPEALEKHYRGD 459          
BLAST of CB291024 vs. ExPASy Swiss-Prot
Match: VATB_AERPE (V-type ATP synthase beta chain OS=Aeropyrum pernix GN=atpB PE=3 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.428e-22
Identity = 55/131 (41.98%), Postives = 80/131 (61.07%), Query Frame = -3
Query:  363 QIYIDRQLQNRQIYPPINVLPSLFRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGXXXXXXXXXXXXXXXXXXERKFVAQGAYDFRNIFQFLDLAWTLFRIFPREVFHRIPGKTLDQYYSR 755
            QI + R+L NR IYPPINVL SL RLMK  IG G TR DH++VSNQLYA+Y+ G +++++ AVVG                  E++F+ QG  + R+I + LD+AW +  + P E    I  +T+ +Y+ +
Sbjct:  329 QIVLSRELHNRGIYPPINVLMSLSRLMKEGIGPGKTREDHAEVSNQLYASYSRGVELRSLTAVVGEESLSERDRRYLKFADLFEQRFLKQGERENRSIEETLDIAWEILSVLPEEELVNIKEETIKKYHPK 459          
BLAST of CB291024 vs. ExPASy Swiss-Prot
Match: VATB_METMJ (V-type ATP synthase beta chain OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=atpB PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.865e-22
Identity = 57/131 (43.51%), Postives = 75/131 (57.25%), Query Frame = -3
Query:  363 QIYIDRQLQNRQIYPPINVLPSLFRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGXXXXXXXXXXXXXXXXXXERKFVAQGAYDFRNIFQFLDLAWTLFRIFPREVFHRIPGKTLDQYYSR 755
            QI ++R+L  + IYPPINVLPSL RLM   IGEG TR DH  VS+QLYA YA G D++ + A+VG                  E +FV QG Y+ R+I + LDL W L    P E   RI  + + +Y+ +
Sbjct:  324 QIVVNRELHRKGIYPPINVLPSLSRLMNLGIGEGHTREDHKKVSDQLYAAYAEGNDLRGLVAIVGKDALSERDRMFLEFADLFEDRFVRQGLYEDRSIEETLDLGWELLSTLPEEQLVRIDRELIQKYHPK 454          
BLAST of CB291024 vs. ExPASy Swiss-Prot
Match: VATB_HALOH (V-type ATP synthase beta chain OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=atpB PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.865e-22
Identity = 58/135 (42.96%), Postives = 81/135 (60.00%), Query Frame = -3
Query:  351 QIYIDRQLQNRQIYPPINVLPSLFRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGXXXXXXXXXXXXXXXXXXERKFVAQGAYDFRNIFQFLDLAWTLFRIFPREVFHRIPGKTLDQYYSRDAVN 755
            QI + R L  R +YPPIN+LPSL RLMK  IGEG TR DH +VS+QLYA Y+  ++V+++ +V+G                  E++F++QG  + R I Q LDLAW +    P     RI G+ L++YY R +VN
Sbjct:  327 QIVLKRDLYQRGVYPPINILPSLSRLMKDGIGEGFTREDHPNVSSQLYAAYSRVQEVKSLASVIGEDELSSLDQTYLKFGRVFEKRFLSQGREENRTIEQTLDLAWEVLSELPPTELDRISGEELEKYY-RGSVN 460          
BLAST of CB291024 vs. ExPASy Swiss-Prot
Match: VATB_METKA (V-type ATP synthase beta chain OS=Methanopyrus kandleri GN=atpB PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.182e-22
Identity = 56/131 (42.75%), Postives = 76/131 (58.02%), Query Frame = -3
Query:  363 QIYIDRQLQNRQIYPPINVLPSLFRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGXXXXXXXXXXXXXXXXXXERKFVAQGAYDFRNIFQFLDLAWTLFRIFPREVFHRIPGKTLDQYYSR 755
            QI + R L  R IYPPI+VLPSL RLM   IG+G TR DH D+SNQLYA YA G+D++ + AVVG                  E++FV QG  + R+I + LDL W L  I P     R+  + +++Y+ +
Sbjct:  850 QIVLSRDLHRRGIYPPIDVLPSLSRLMDEGIGKGKTREDHPDLSNQLYAAYAEGRDLRDLVAVVGEEALTERDRKFLKFADEFEQRFVKQGRDENRSIEETLDLGWELLAILPERELKRVSDELIEKYHPK 980          
BLAST of CB291024 vs. ExPASy Swiss-Prot
Match: VATB_HALVO (V-type ATP synthase beta chain OS=Halobacterium volcanii GN=atpB PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.427e-22
Identity = 57/133 (42.86%), Postives = 76/133 (57.14%), Query Frame = -3
Query:  357 QIYIDRQLQNRQIYPPINVLPSLFRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGXXXXXXXXXXXXXXXXXXERKFVAQGAYDFRNIFQFLDLAWTLFRIFPREVFHRIPGKTLDQYYSRDA 755
            QIYIDR L ++ I PPIN LPSL RLM   IGEG+TR DH+DVS+Q+YA YA G+D++ +  +VG                  E +FV QG    R+I   LD+ W L    P+   +RI  + ++ YY  DA
Sbjct:  329 QIYIDRDLNSQGIRPPINPLPSLSRLMDDGIGEGLTREDHADVSDQMYAAYAEGEDLRDLVNIVGREALSERDNKYLDFAERFEAEFVNQGFDTDRSIEDTLDIGWDLLSTLPKSELNRIDEELIEDYYEDDA 461          
The following BLAST results are available for this feature:
BLAST of CB291024 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
VATB_PLAFA2.597e-3251.85V-type proton ATPase subunit B OS=Plasmodium falci... [more]
VATB_DICT67.573e-2442.42V-type ATP synthase beta chain OS=Dictyoglomus the... [more]
VATB_NATPD3.759e-2344.70V-type ATP synthase beta chain OS=Natronomonas pha... [more]
VATB_DICTD3.759e-2341.67V-type ATP synthase beta chain OS=Dictyoglomus tur... [more]
VATB2_CLOTE3.759e-2341.67V-type ATP synthase beta chain 2 OS=Clostridium te... [more]
VATB_AERPE1.428e-2241.98V-type ATP synthase beta chain OS=Aeropyrum pernix... [more]
VATB_METMJ1.865e-2243.51V-type ATP synthase beta chain OS=Methanoculleus m... [more]
VATB_HALOH1.865e-2242.96V-type ATP synthase beta chain OS=Halothermothrix ... [more]
VATB_METKA3.182e-2242.75V-type ATP synthase beta chain OS=Methanopyrus kan... [more]
VATB_HALVO5.427e-2242.86V-type ATP synthase beta chain OS=Halobacterium vo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ba04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ba04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291024 ID=CB291024; Name=CB291024; organism=Citrus sinensis; type=EST; length=757bp
TTTTTTTTTTTTTTTTTAGACAGAACTTCTGGATAAATAGAATAATCCTC
AAACTTGGGCATTATAATCCTCACTACCATGGTTTCAATATTGATAAAAA
GTATCCAGATCCCCCTAATAAATAGAGATACAGGAATTACAAGATCTAAA
AAGCCCTCCGCTGAAAGAATATTTGCATCTTTTGACTAAACAAAAAGCTT
TGCACGGGGGCCTCAAGGGGACTACAACCTTTATTATTTCTGCTCAACGG
AAAAATGCAACCTATATCAAAAAGCTGGGGAATAAACAAATTGTCGACAA
AACCAACGAGGCAGCAAGGTACATGTCAGTACAAAAGACCTTCTTCATCA
ATTAACTGCATCACGGCTGTAGTACTGGTCAAGGGTCTTTCCTGGTATAC
GATGGAAAACCTCCCGAGGAAAGATGCGAAAAAGTGTCCATGCCAAATCA
AGAAATTGGAAAATATTCCTAAAGTCATAAGCTCCTTGAGCAACAAATTT
TCTCTCAAACTTATCCAGGAACTCTAAGTACAGCAAATCCTCAAAAAAAA
GTGCTTCTTCTCCGACCACAGCCTTCATTGCCTGGACATCCTTCCCAATG
GCATAATTTGCATACAGCTGGTTGGAAACATCGGAATGGTCCCTACGAGT
CATCCCCTCACCAATAGCACTCTTCATCAAACGAAATAGGGATGGAAGGA
CATTGATCGGAGGATATATCTGTCTGTTCTGGAGCTGCCGGTCAATGTAA
ATCTGCC
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